Clone BS09607 Report

Search the DGRC for BS09607

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG13091-RA
Protein status:BS09607.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09607.3prime Sequence

954 bp (841 high quality bases) assembled on 2006-04-19

> BS09607.3prime
ATGGTCTAGAAAGCTTTTAAATACTTGGAAAATCGGCCACCGGAGACGGC
AGGGTAACCTCAATGCTCCTAATGTAATTATTAGCAATTACACTGTACAA
GATCCACACAATCTTTCCGAGAGCAAGGCAAAGTACAAGTTGAAGGGATC
GATGCAATATGTAAAACCTGAATAAACGCTTTTTCGCTTGTTCCAAGGTG
TCCCAGGATTCCTTGTAAAGGAACACCCGCATTCCGGACAATATGCGAGT
GAAGTACTCCTCCCAGTTAAGAGTGGCCATGTCAAAGGGAAATATACTCC
TGTCCTCCGGCGACATTGAATCCCATAATTGATTGGTATTATTCATATCC
ATCTCGTACGTTTTTCCATTGAAGGGAAACAGAAGCAAAAGTACTTCGTG
GATCTTTTGATAGCTCCTCATCAGAATAGGCTTTTTACCTTGGATACGTA
GGAGGAGATCGAAGAAGAAACCAGGAATCAGATGATAAAATATGCAACCC
AGCTTAAACAACCAAGGGCAGGTGGTAAAGTGGGCAAATGGATACCAAAT
CGTTTTGGTCACCGGAATCGTATGGTTATGATGGATGCCCAACTTGACCG
CCTTCCCAAAGGTGATGGAATTTGACTTGGTTGTGGCGAGTGTATAAATG
GGCGGCGGCTTCTTCGCCGCCAACTGAGAAGACGATCGCGATTCGGAATT
CTTTGCCACCTGCCATCCGGAAGCCAGCGCCACGTTGGCACAATAGTCGC
CAGGAACTATTATAGCATCGGCCTTAGGATTGACATACAAGAGGCGAAGG
ATCCCATATGTATTGCCGTATATCAAGGCTACGACTCCGTGAAGGTTGTC
AATCCATCCAGACATCGGCTCCTTGAAATTTGCCAAAATTATCGCAGGAC
GAAAGACGCAGATTGGCAGGTCCTGACCCTCCATCTGGATCACCTGCTCG
GCCA

BS09607.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13091-PA 1572 CG13091-RA 635..1572 954..17 4690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13091-RB 1796 CG13091-RB 662..1599 954..17 4690 100 Minus
CG13091-RA 1718 CG13091-RA 662..1599 954..17 4690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8520686..8521408 888..166 3615 100 Minus
2L 23513712 2L 8521457..8521612 172..17 780 100 Minus
2L 23513712 2L 8520527..8520592 954..889 330 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:45:26 has no hits.

BS09607.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:03 Download gff for BS09607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13091-PA 636..1572 17..953 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:45 Download gff for BS09607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13091-PA 636..1572 17..953 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:18:14 Download gff for BS09607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13091-RA 663..1599 17..953 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:58:10 Download gff for BS09607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13091-RA 663..1599 17..953 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:58:10 Download gff for BS09607.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8520528..8520592 889..953 100 -> Minus
2L 8520686..8521406 168..888 100 -> Minus
2L 8521462..8521612 17..167 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:18:14 Download gff for BS09607.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8520528..8520592 889..953 100 -> Minus
arm_2L 8520686..8521406 168..888 100 -> Minus
arm_2L 8521462..8521612 17..167 100   Minus

BS09607.5prime Sequence

937 bp (829 high quality bases) assembled on 2006-04-19

> BS09607.5prime
GAAGTTATCAGTCGACATGCAGACAGACATATTGCAATTTTACAAAGACA
AATCGGTTTTTGTAACCGGAGGCACAGGATTTCTAGGAAAAGTGATCATT
GAAAAGCTCCTCCGTTCAACGGATGTAAGGCGAGTTTATCTATTAGTAAG
GCCAAAAAAGAATGAAACGGTGGAAGGACGGTTTCAGGCCTGGAAAGATG
AGCCGGTTTTTAAAATCCTACTCAAGGCTAAACCGGAGGCTCTGAAGTTG
GTCACACCCATTTCGGGAGACTGCAGCGAACCCGGTCTGGGTCTCAGCGA
CGGGGATCGCAGGATGGTGACCGCTGATGTGCAGGTGATCATCCACAGTG
CCGCCTCCATTCGCTTCGTGGAGCCGCTTCAAAGGGCTTTGAACATTAAT
ACGCGTGCAACGCGCCTGATGATTCAGCTGGCCAAGGAGATGAAAGGCTT
GGAAGCCTTCGTGCACATCTCCACGGCCTTCTCCAACTGCCCCTCGCAGC
ACATTGAGGAGCGTTTCTATCCGGAGCACCTAACGTGCCCGGCGGCCAAG
GTGCTCGAATTCAACGAGACTTTGAGCCCAGATTTGTTGGACAAGATGGC
TCCGGCTCTTATGGGAAAGTTTCCGAACACCTATACCTATACCAAGGCAC
TGGCCGAGCAGGTGATCCAGATGGAGGGTCAGGACCTGCCAATCTGCGTC
TTTCGTCCTGCGATAATTTTGGCAAATTTCAAGGAGCCGATGTCTGGATG
GATTGACAACCTTCACGGAGTCGTAGCCTTGATATACGGCAATACATATG
GGATCCTTCGCCTCTTGTATGTCAATCCTAAGGCCGATGCTATAATAGTT
CCTGGCGACTATTGTGCCAACGTGGCGCTGGCTTCCGGATGGCANGTGGC
AAAGAATCCGAATCGCGATCGTTCTCTCAGTTGGCGG

BS09607.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13091-PA 1572 CG13091-RA 1..891 17..907 4436 99.8 Plus
CG10097-PA 1350 CG10097-RA 454..498 626..670 150 93.3 Plus
CG10097-PB 1506 CG10097-RB 610..654 626..670 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13091-RB 1796 CG13091-RB 28..949 17..937 4544 99.6 Plus
CG13091-RA 1718 CG13091-RA 28..949 17..937 4544 99.6 Plus
CG10097-RC 4716 CG10097-RC 33..715 38..720 280 70.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8520081..8520592 205..716 2560 100 Plus
2L 23513712 2L 8520686..8520907 717..937 1019 98.2 Plus
2L 23513712 2L 8519867..8519983 91..207 585 100 Plus
2L 23513712 2L 8519717..8519792 17..92 380 100 Plus
3R 32079331 3R 12391887..12392168 677..396 240 72.3 Minus
Blast to na_te.dros performed on 2015-02-11 10:26:01 has no hits.

BS09607.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:04 Download gff for BS09607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13091-PA 1..922 17..937 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:46 Download gff for BS09607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13091-PA 1..922 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:51 Download gff for BS09607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13091-RA 28..949 17..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:46 Download gff for BS09607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13091-RA 28..949 17..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:46 Download gff for BS09607.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8519717..8519792 17..92 100 -> Plus
2L 8519869..8519981 93..205 100 -> Plus
2L 8520082..8520592 206..716 100 -> Plus
2L 8520686..8520907 717..937 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:51 Download gff for BS09607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8519869..8519981 93..205 100 -> Plus
arm_2L 8519717..8519792 17..92 100 -> Plus
arm_2L 8520082..8520592 206..716 100 -> Plus
arm_2L 8520686..8520907 717..937 98   Plus

BS09607.complete Sequence

1604 bp (1604 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636450

> BS09607.complete
GAAGTTATCAGTCGACATGCAGACAGACATATTGCAATTTTACAAAGACA
AATCGGTTTTTGTAACCGGAGGCACAGGATTTCTAGGAAAAGTGATCATT
GAAAAGCTCCTCCGTTCAACGGATGTAAGGCGAGTTTATCTATTAGTAAG
GCCAAAAAAGAATGAAACGGTGGAAGGACGGTTTCAGGCCTGGAAAGATG
AGCCGGTTTTTAAAATCCTACTCAAGGCTAAACCGGAGGCTCTGAAGTTG
GTCACACCCATTTCGGGAGACTGCAGCGAACCCGGTCTGGGTCTCAGCGA
CGGGGATCGCAGGATGGTGACCGCTGATGTGCAGGTGATCATCCACAGTG
CCGCCTCCATTCGCTTCGTGGAGCCGCTTCAAAGGGCTTTGAACATTAAT
ACGCGTGCAACGCGCCTGATGATTCAGCTGGCCAAGGAGATGAAAGGCTT
GGAAGCCTTCGTGCACATCTCCACGGCCTTCTCCAACTGCCCCTCGCAGC
ACATTGAGGAGCGTTTCTATCCGGAGCACCTAACGTGCCCGGCGGCCAAG
GTGCTCGAATTCAACGAGACTTTGAGCCCAGATTTGTTGGACAAGATGGC
TCCGGCTCTTATGGGAAAGTTTCCGAACACCTATACCTATACCAAGGCAC
TGGCCGAGCAGGTGATCCAGATGGAGGGTCAGGACCTGCCAATCTGCGTC
TTTCGTCCTGCGATAATTTTGGCAAATTTCAAGGAGCCGATGTCTGGATG
GATTGACAACCTTCACGGAGTCGTAGCCTTGATATACGGCAATACATATG
GGATCCTTCGCCTCTTGTATGTCAATCCTAAGGCCGATGCTATAATAGTT
CCTGGCGACTATTGTGCCAACGTGGCGCTGGCTTCCGGATGGCAGGTGGC
AAAGAATTCCGAATCGCGATCGTCTTCTCAGTTGGCGGCGAAGAAGCCGC
CGCCCATTTATACACTCGCCACAACCAAGTCAAATTCCATCACCTTTGGG
AAGGCGGTCAAGTTGGGCATCCATCATAACCATACGATTCCGGTGACCAA
AACGATTTGGTATCCATTTGCCCACTTTACCACCTGCCCTTGGTTGTTTA
AGCTGGGTTGCATATTTTATCATCTGATTCCTGGTTTCTTCTTCGATCTC
CTCCTACGTATCCAAGGTAAAAAGCCTATTCTGATGAGGAGCTATCAAAA
GATCCACGAAGTACTTTTGCTTCTGTTTCCCTTCAATGGAAAAACGTACG
AGATGGATATGAATAATACCAATCAATTATGGGATTCAATGTCGCCGGAG
GACAGGAGTATATTTCCCTTTGACATGGCCACTCTTAACTGGGAGGAGTA
CTTCACTCGCATATTGTCCGGAATGCGGGTGTTCCTTTACAAGGAATCCT
GGGACACCTTGGAACAAGCGAAAAAGCGTTTATTCAGGTTTTACATATTG
CATCGATCCCTTCAACTTGTACTTTGCCTTGCTCTCGGAAAGATTGTGTG
GATCTTGTACAGTGTAATTGCTAATAATTACATTAGGAGCATTGAGGTTA
CCCTGCCGTCTCCGGTGGCCGATTTTCCAAGTATTTAAAAGCTTTCTAGA
CCAT

BS09607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13091-RB 1572 CG13091-PB 1..1572 17..1588 7860 100 Plus
CG13091-RA 1572 CG13091-PA 1..1572 17..1588 7860 100 Plus
CG10097-RC 1506 CG10097-PC 22..704 38..720 265 69.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13091-RB 1796 CG13091-RB 28..1599 17..1588 7860 100 Plus
CG13091-RA 1718 CG13091-RA 28..1599 17..1588 7860 100 Plus
CG10097-RC 4716 CG10097-RC 33..715 38..720 265 69.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8520686..8521408 717..1439 3615 100 Plus
2L 23513712 2L 8520081..8520592 205..716 2560 100 Plus
2L 23513712 2L 8521457..8521612 1433..1588 780 100 Plus
2L 23513712 2L 8519867..8519983 91..207 585 100 Plus
2L 23513712 2L 8519717..8519792 17..92 380 100 Plus
3R 32079331 3R 12391887..12392168 677..396 240 72.3 Minus
Blast to na_te.dros performed on 2014-11-28 01:24:25 has no hits.

BS09607.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:45 Download gff for BS09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG13091-RA 1..1572 17..1588 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:48 Download gff for BS09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG13091-RA 28..1599 17..1588 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:03 Download gff for BS09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG13091-RA 28..1597 17..1586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:45 Download gff for BS09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG13091-RA 28..1599 17..1588 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:20 Download gff for BS09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG13091-RA 28..1597 17..1586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:20 Download gff for BS09607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8519717..8519792 17..92 100 -> Plus
2L 8519869..8519981 93..205 100 -> Plus
2L 8520082..8520592 206..716 100 -> Plus
2L 8520686..8521406 717..1437 100 -> Plus
2L 8521462..8521610 1438..1586 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:03 Download gff for BS09607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8519717..8519792 17..92 100 -> Plus
arm_2L 8519869..8519981 93..205 100 -> Plus
arm_2L 8520082..8520592 206..716 100 -> Plus
arm_2L 8520686..8521406 717..1437 100 -> Plus
arm_2L 8521462..8521610 1438..1586 100   Plus

BS09607.pep Sequence

Translation from 16 to 1587

> BS09607.pep
MQTDILQFYKDKSVFVTGGTGFLGKVIIEKLLRSTDVRRVYLLVRPKKNE
TVEGRFQAWKDEPVFKILLKAKPEALKLVTPISGDCSEPGLGLSDGDRRM
VTADVQVIIHSAASIRFVEPLQRALNINTRATRLMIQLAKEMKGLEAFVH
ISTAFSNCPSQHIEERFYPEHLTCPAAKVLEFNETLSPDLLDKMAPALMG
KFPNTYTYTKALAEQVIQMEGQDLPICVFRPAIILANFKEPMSGWIDNLH
GVVALIYGNTYGILRLLYVNPKADAIIVPGDYCANVALASGWQVAKNSES
RSSSQLAAKKPPPIYTLATTKSNSITFGKAVKLGIHHNHTIPVTKTIWYP
FAHFTTCPWLFKLGCIFYHLIPGFFFDLLLRIQGKKPILMRSYQKIHEVL
LLLFPFNGKTYEMDMNNTNQLWDSMSPEDRSIFPFDMATLNWEEYFTRIL
SGMRVFLYKESWDTLEQAKKRLFRFYILHRSLQLVLCLALGKIVWILYSV
IANNYIRSIEVTLPSPVADFPSI*

BS09607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13091-PB 523 CG13091-PB 1..523 1..523 2736 100 Plus
CG13091-PA 523 CG13091-PA 1..523 1..523 2736 100 Plus
CG10097-PC 501 CG10097-PC 1..493 1..497 1490 53.5 Plus
CG10097-PD 501 CG10097-PD 1..493 1..497 1490 53.5 Plus
CG10097-PB 501 CG10097-PB 1..493 1..497 1490 53.5 Plus