Clone Sequence Records
BS09607.3prime Sequence
954 bp (841 high quality bases) assembled on 2006-04-19
> BS09607.3prime
ATGGTCTAGAAAGCTTTTAAATACTTGGAAAATCGGCCACCGGAGACGGC
AGGGTAACCTCAATGCTCCTAATGTAATTATTAGCAATTACACTGTACAA
GATCCACACAATCTTTCCGAGAGCAAGGCAAAGTACAAGTTGAAGGGATC
GATGCAATATGTAAAACCTGAATAAACGCTTTTTCGCTTGTTCCAAGGTG
TCCCAGGATTCCTTGTAAAGGAACACCCGCATTCCGGACAATATGCGAGT
GAAGTACTCCTCCCAGTTAAGAGTGGCCATGTCAAAGGGAAATATACTCC
TGTCCTCCGGCGACATTGAATCCCATAATTGATTGGTATTATTCATATCC
ATCTCGTACGTTTTTCCATTGAAGGGAAACAGAAGCAAAAGTACTTCGTG
GATCTTTTGATAGCTCCTCATCAGAATAGGCTTTTTACCTTGGATACGTA
GGAGGAGATCGAAGAAGAAACCAGGAATCAGATGATAAAATATGCAACCC
AGCTTAAACAACCAAGGGCAGGTGGTAAAGTGGGCAAATGGATACCAAAT
CGTTTTGGTCACCGGAATCGTATGGTTATGATGGATGCCCAACTTGACCG
CCTTCCCAAAGGTGATGGAATTTGACTTGGTTGTGGCGAGTGTATAAATG
GGCGGCGGCTTCTTCGCCGCCAACTGAGAAGACGATCGCGATTCGGAATT
CTTTGCCACCTGCCATCCGGAAGCCAGCGCCACGTTGGCACAATAGTCGC
CAGGAACTATTATAGCATCGGCCTTAGGATTGACATACAAGAGGCGAAGG
ATCCCATATGTATTGCCGTATATCAAGGCTACGACTCCGTGAAGGTTGTC
AATCCATCCAGACATCGGCTCCTTGAAATTTGCCAAAATTATCGCAGGAC
GAAAGACGCAGATTGGCAGGTCCTGACCCTCCATCTGGATCACCTGCTCG
GCCA
BS09607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13091-PA | 1572 | CG13091-RA | 635..1572 | 954..17 | 4690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13091-RB | 1796 | CG13091-RB | 662..1599 | 954..17 | 4690 | 100 | Minus |
CG13091-RA | 1718 | CG13091-RA | 662..1599 | 954..17 | 4690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8520686..8521408 | 888..166 | 3615 | 100 | Minus |
2L | 23513712 | 2L | 8521457..8521612 | 172..17 | 780 | 100 | Minus |
2L | 23513712 | 2L | 8520527..8520592 | 954..889 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:45:26 has no hits.
BS09607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:03 Download gff for
BS09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-PA | 636..1572 | 17..953 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:45 Download gff for
BS09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-PA | 636..1572 | 17..953 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:18:14 Download gff for
BS09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-RA | 663..1599 | 17..953 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:58:10 Download gff for
BS09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-RA | 663..1599 | 17..953 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:58:10 Download gff for
BS09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8520528..8520592 | 889..953 | 100 | -> | Minus |
2L | 8520686..8521406 | 168..888 | 100 | -> | Minus |
2L | 8521462..8521612 | 17..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:18:14 Download gff for
BS09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8520528..8520592 | 889..953 | 100 | -> | Minus |
arm_2L | 8520686..8521406 | 168..888 | 100 | -> | Minus |
arm_2L | 8521462..8521612 | 17..167 | 100 | | Minus |
BS09607.5prime Sequence
937 bp (829 high quality bases) assembled on 2006-04-19
> BS09607.5prime
GAAGTTATCAGTCGACATGCAGACAGACATATTGCAATTTTACAAAGACA
AATCGGTTTTTGTAACCGGAGGCACAGGATTTCTAGGAAAAGTGATCATT
GAAAAGCTCCTCCGTTCAACGGATGTAAGGCGAGTTTATCTATTAGTAAG
GCCAAAAAAGAATGAAACGGTGGAAGGACGGTTTCAGGCCTGGAAAGATG
AGCCGGTTTTTAAAATCCTACTCAAGGCTAAACCGGAGGCTCTGAAGTTG
GTCACACCCATTTCGGGAGACTGCAGCGAACCCGGTCTGGGTCTCAGCGA
CGGGGATCGCAGGATGGTGACCGCTGATGTGCAGGTGATCATCCACAGTG
CCGCCTCCATTCGCTTCGTGGAGCCGCTTCAAAGGGCTTTGAACATTAAT
ACGCGTGCAACGCGCCTGATGATTCAGCTGGCCAAGGAGATGAAAGGCTT
GGAAGCCTTCGTGCACATCTCCACGGCCTTCTCCAACTGCCCCTCGCAGC
ACATTGAGGAGCGTTTCTATCCGGAGCACCTAACGTGCCCGGCGGCCAAG
GTGCTCGAATTCAACGAGACTTTGAGCCCAGATTTGTTGGACAAGATGGC
TCCGGCTCTTATGGGAAAGTTTCCGAACACCTATACCTATACCAAGGCAC
TGGCCGAGCAGGTGATCCAGATGGAGGGTCAGGACCTGCCAATCTGCGTC
TTTCGTCCTGCGATAATTTTGGCAAATTTCAAGGAGCCGATGTCTGGATG
GATTGACAACCTTCACGGAGTCGTAGCCTTGATATACGGCAATACATATG
GGATCCTTCGCCTCTTGTATGTCAATCCTAAGGCCGATGCTATAATAGTT
CCTGGCGACTATTGTGCCAACGTGGCGCTGGCTTCCGGATGGCANGTGGC
AAAGAATCCGAATCGCGATCGTTCTCTCAGTTGGCGG
BS09607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13091-PA | 1572 | CG13091-RA | 1..891 | 17..907 | 4436 | 99.8 | Plus |
CG10097-PA | 1350 | CG10097-RA | 454..498 | 626..670 | 150 | 93.3 | Plus |
CG10097-PB | 1506 | CG10097-RB | 610..654 | 626..670 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13091-RB | 1796 | CG13091-RB | 28..949 | 17..937 | 4544 | 99.6 | Plus |
CG13091-RA | 1718 | CG13091-RA | 28..949 | 17..937 | 4544 | 99.6 | Plus |
CG10097-RC | 4716 | CG10097-RC | 33..715 | 38..720 | 280 | 70.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8520081..8520592 | 205..716 | 2560 | 100 | Plus |
2L | 23513712 | 2L | 8520686..8520907 | 717..937 | 1019 | 98.2 | Plus |
2L | 23513712 | 2L | 8519867..8519983 | 91..207 | 585 | 100 | Plus |
2L | 23513712 | 2L | 8519717..8519792 | 17..92 | 380 | 100 | Plus |
3R | 32079331 | 3R | 12391887..12392168 | 677..396 | 240 | 72.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:26:01 has no hits.
BS09607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:04 Download gff for
BS09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-PA | 1..922 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:46 Download gff for
BS09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-PA | 1..922 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:51 Download gff for
BS09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-RA | 28..949 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:46 Download gff for
BS09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-RA | 28..949 | 17..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:46 Download gff for
BS09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8519717..8519792 | 17..92 | 100 | -> | Plus |
2L | 8519869..8519981 | 93..205 | 100 | -> | Plus |
2L | 8520082..8520592 | 206..716 | 100 | -> | Plus |
2L | 8520686..8520907 | 717..937 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:51 Download gff for
BS09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8519869..8519981 | 93..205 | 100 | -> | Plus |
arm_2L | 8519717..8519792 | 17..92 | 100 | -> | Plus |
arm_2L | 8520082..8520592 | 206..716 | 100 | -> | Plus |
arm_2L | 8520686..8520907 | 717..937 | 98 | | Plus |
BS09607.complete Sequence
1604 bp (1604 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636450
> BS09607.complete
GAAGTTATCAGTCGACATGCAGACAGACATATTGCAATTTTACAAAGACA
AATCGGTTTTTGTAACCGGAGGCACAGGATTTCTAGGAAAAGTGATCATT
GAAAAGCTCCTCCGTTCAACGGATGTAAGGCGAGTTTATCTATTAGTAAG
GCCAAAAAAGAATGAAACGGTGGAAGGACGGTTTCAGGCCTGGAAAGATG
AGCCGGTTTTTAAAATCCTACTCAAGGCTAAACCGGAGGCTCTGAAGTTG
GTCACACCCATTTCGGGAGACTGCAGCGAACCCGGTCTGGGTCTCAGCGA
CGGGGATCGCAGGATGGTGACCGCTGATGTGCAGGTGATCATCCACAGTG
CCGCCTCCATTCGCTTCGTGGAGCCGCTTCAAAGGGCTTTGAACATTAAT
ACGCGTGCAACGCGCCTGATGATTCAGCTGGCCAAGGAGATGAAAGGCTT
GGAAGCCTTCGTGCACATCTCCACGGCCTTCTCCAACTGCCCCTCGCAGC
ACATTGAGGAGCGTTTCTATCCGGAGCACCTAACGTGCCCGGCGGCCAAG
GTGCTCGAATTCAACGAGACTTTGAGCCCAGATTTGTTGGACAAGATGGC
TCCGGCTCTTATGGGAAAGTTTCCGAACACCTATACCTATACCAAGGCAC
TGGCCGAGCAGGTGATCCAGATGGAGGGTCAGGACCTGCCAATCTGCGTC
TTTCGTCCTGCGATAATTTTGGCAAATTTCAAGGAGCCGATGTCTGGATG
GATTGACAACCTTCACGGAGTCGTAGCCTTGATATACGGCAATACATATG
GGATCCTTCGCCTCTTGTATGTCAATCCTAAGGCCGATGCTATAATAGTT
CCTGGCGACTATTGTGCCAACGTGGCGCTGGCTTCCGGATGGCAGGTGGC
AAAGAATTCCGAATCGCGATCGTCTTCTCAGTTGGCGGCGAAGAAGCCGC
CGCCCATTTATACACTCGCCACAACCAAGTCAAATTCCATCACCTTTGGG
AAGGCGGTCAAGTTGGGCATCCATCATAACCATACGATTCCGGTGACCAA
AACGATTTGGTATCCATTTGCCCACTTTACCACCTGCCCTTGGTTGTTTA
AGCTGGGTTGCATATTTTATCATCTGATTCCTGGTTTCTTCTTCGATCTC
CTCCTACGTATCCAAGGTAAAAAGCCTATTCTGATGAGGAGCTATCAAAA
GATCCACGAAGTACTTTTGCTTCTGTTTCCCTTCAATGGAAAAACGTACG
AGATGGATATGAATAATACCAATCAATTATGGGATTCAATGTCGCCGGAG
GACAGGAGTATATTTCCCTTTGACATGGCCACTCTTAACTGGGAGGAGTA
CTTCACTCGCATATTGTCCGGAATGCGGGTGTTCCTTTACAAGGAATCCT
GGGACACCTTGGAACAAGCGAAAAAGCGTTTATTCAGGTTTTACATATTG
CATCGATCCCTTCAACTTGTACTTTGCCTTGCTCTCGGAAAGATTGTGTG
GATCTTGTACAGTGTAATTGCTAATAATTACATTAGGAGCATTGAGGTTA
CCCTGCCGTCTCCGGTGGCCGATTTTCCAAGTATTTAAAAGCTTTCTAGA
CCAT
BS09607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13091-RB | 1572 | CG13091-PB | 1..1572 | 17..1588 | 7860 | 100 | Plus |
CG13091-RA | 1572 | CG13091-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
CG10097-RC | 1506 | CG10097-PC | 22..704 | 38..720 | 265 | 69.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13091-RB | 1796 | CG13091-RB | 28..1599 | 17..1588 | 7860 | 100 | Plus |
CG13091-RA | 1718 | CG13091-RA | 28..1599 | 17..1588 | 7860 | 100 | Plus |
CG10097-RC | 4716 | CG10097-RC | 33..715 | 38..720 | 265 | 69.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8520686..8521408 | 717..1439 | 3615 | 100 | Plus |
2L | 23513712 | 2L | 8520081..8520592 | 205..716 | 2560 | 100 | Plus |
2L | 23513712 | 2L | 8521457..8521612 | 1433..1588 | 780 | 100 | Plus |
2L | 23513712 | 2L | 8519867..8519983 | 91..207 | 585 | 100 | Plus |
2L | 23513712 | 2L | 8519717..8519792 | 17..92 | 380 | 100 | Plus |
3R | 32079331 | 3R | 12391887..12392168 | 677..396 | 240 | 72.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:24:25 has no hits.
BS09607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:45 Download gff for
BS09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-RA | 1..1572 | 17..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:48 Download gff for
BS09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-RA | 28..1599 | 17..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:03 Download gff for
BS09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-RA | 28..1597 | 17..1586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:45 Download gff for
BS09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-RA | 28..1599 | 17..1588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:20 Download gff for
BS09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13091-RA | 28..1597 | 17..1586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:20 Download gff for
BS09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8519717..8519792 | 17..92 | 100 | -> | Plus |
2L | 8519869..8519981 | 93..205 | 100 | -> | Plus |
2L | 8520082..8520592 | 206..716 | 100 | -> | Plus |
2L | 8520686..8521406 | 717..1437 | 100 | -> | Plus |
2L | 8521462..8521610 | 1438..1586 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:03 Download gff for
BS09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8519717..8519792 | 17..92 | 100 | -> | Plus |
arm_2L | 8519869..8519981 | 93..205 | 100 | -> | Plus |
arm_2L | 8520082..8520592 | 206..716 | 100 | -> | Plus |
arm_2L | 8520686..8521406 | 717..1437 | 100 | -> | Plus |
arm_2L | 8521462..8521610 | 1438..1586 | 100 | | Plus |
BS09607.pep Sequence
Translation from 16 to 1587
> BS09607.pep
MQTDILQFYKDKSVFVTGGTGFLGKVIIEKLLRSTDVRRVYLLVRPKKNE
TVEGRFQAWKDEPVFKILLKAKPEALKLVTPISGDCSEPGLGLSDGDRRM
VTADVQVIIHSAASIRFVEPLQRALNINTRATRLMIQLAKEMKGLEAFVH
ISTAFSNCPSQHIEERFYPEHLTCPAAKVLEFNETLSPDLLDKMAPALMG
KFPNTYTYTKALAEQVIQMEGQDLPICVFRPAIILANFKEPMSGWIDNLH
GVVALIYGNTYGILRLLYVNPKADAIIVPGDYCANVALASGWQVAKNSES
RSSSQLAAKKPPPIYTLATTKSNSITFGKAVKLGIHHNHTIPVTKTIWYP
FAHFTTCPWLFKLGCIFYHLIPGFFFDLLLRIQGKKPILMRSYQKIHEVL
LLLFPFNGKTYEMDMNNTNQLWDSMSPEDRSIFPFDMATLNWEEYFTRIL
SGMRVFLYKESWDTLEQAKKRLFRFYILHRSLQLVLCLALGKIVWILYSV
IANNYIRSIEVTLPSPVADFPSI*
BS09607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13091-PB | 523 | CG13091-PB | 1..523 | 1..523 | 2736 | 100 | Plus |
CG13091-PA | 523 | CG13091-PA | 1..523 | 1..523 | 2736 | 100 | Plus |
CG10097-PC | 501 | CG10097-PC | 1..493 | 1..497 | 1490 | 53.5 | Plus |
CG10097-PD | 501 | CG10097-PD | 1..493 | 1..497 | 1490 | 53.5 | Plus |
CG10097-PB | 501 | CG10097-PB | 1..493 | 1..497 | 1490 | 53.5 | Plus |