Clone Sequence Records
BS09609.3prime Sequence
854 bp (789 high quality bases) assembled on 2006-04-19
> BS09609.3prime
ATGGTCTAGAAAGCTTCTAGTAGCAGCACTTGCTGCGGTTGTTGTTGGCG
CCGCTGACCAGCTTGCAGTGCTGCATCTCCGAGCGGCGCGGGCGGTTGGC
CTTGGCCTGGAAGTCGCGCACCTTGTTGGCCCGCTTGATGGCACTGCGGC
AGAGCTGCTGGTGCTCCTTCTTGTTCTTGCTCTTCTGACTCTGACGAGCC
AGCGTCTGCTGCTTCAACTGTACGGCCGCATGGCTATCGAAGCGAGCGTT
GGGGGCACGTTGCTGCTCCTGGAGAGCCTGGCGCTGATCCTGCGGCTCAG
CCTCCGGCTCGGGCTCCTCCCGCTGCTGCGGCACCTCCGTCGACACCCCG
AGATCAAGATTAACAAAACTATCGGTTCCCTCCTGGGTGGACCTAATACT
ATGATAAACGGACATGCAGGACTCCTCCATCAGCACGTTAGCACCCTGGC
CGTGATCCTGACCCTGGTCGCTGCCGCTCGGCGAGGCCACGTACAGCGAC
TGGGTCAGCGTGTCATGATCGCCGGCCCCCAGGGCGGGCACACTTCTGGG
CGGGCTGAGGGTGCTGATGCTCAGCGGCCGGGAGACGCGCGAGCGTTGCA
GATAGTTGCGTTGCTGCTGCGGCCGGGGCCCACTGTACAGGGAACACGAG
TTGACGCCCTGCCGGCGGCGGCAGTTGAACGCCGTGCCAGTGGCCACGGT
CACCATTGGAGAGGAGGCGTTGTTGGAACCGCCCCGCGGCTGCGACACCT
CCACCACGGAGAGCTCCTCCTCGGAGTCGCTGCGTGGCAGGGAGTCGTCC
TCCTCGTCTTCCTTCTCCACAATGTACCATTCGTCCTCGTCGAAGCCCTC
GTCG
BS09609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11347-PD | 1164 | CG11347-RD | 327..1164 | 854..17 | 4165 | 99.8 | Minus |
CG11347-PB | 1164 | CG11347-RB | 327..1164 | 854..17 | 4165 | 99.8 | Minus |
CG11347-PA | 1164 | CG11347-RA | 327..1164 | 854..17 | 4165 | 99.8 | Minus |
CG11347-PC | 822 | CG11347-RC | 32..822 | 807..17 | 3955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-RE | 1906 | CG11347-RE | 707..1544 | 854..17 | 4175 | 99.9 | Minus |
DOR-RA | 2022 | CG11347-RA | 823..1660 | 854..17 | 4175 | 99.9 | Minus |
DOR-RB | 2311 | CG11347-RB | 730..1567 | 854..17 | 4175 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4418780..4419172 | 809..417 | 1965 | 100 | Minus |
3L | 28110227 | 3L | 4419428..4419663 | 417..182 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 4419738..4419904 | 183..17 | 835 | 100 | Minus |
3L | 28110227 | 3L | 4418448..4418494 | 854..808 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:56:08 has no hits.
BS09609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:05 Download gff for
BS09609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-PB | 327..1164 | 17..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:48 Download gff for
BS09609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-PA | 327..1164 | 17..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:38:32 Download gff for
BS09609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 730..1569 | 13..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:25 Download gff for
BS09609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 730..1569 | 13..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:25 Download gff for
BS09609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4419429..4419663 | 182..416 | 100 | -> | Minus |
3L | 4419740..4419906 | 13..181 | 98 | | Minus |
3L | 4418782..4419172 | 417..807 | 100 | -> | Minus |
3L | 4418448..4418494 | 808..854 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:38:32 Download gff for
BS09609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4418448..4418494 | 808..854 | 97 | -> | Minus |
arm_3L | 4418782..4419172 | 417..807 | 100 | -> | Minus |
arm_3L | 4419429..4419663 | 182..416 | 100 | -> | Minus |
arm_3L | 4419740..4419906 | 13..181 | 98 | | Minus |
BS09609.5prime Sequence
836 bp (810 high quality bases) assembled on 2006-04-19
> BS09609.5prime
GAAGTTATCAGTCGACATGTTAAGCAGCCTCGCCTCGTATCTCTTTGGAT
CAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCCCAGAACCGA
ACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCCGACCAGCGA
TCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGCCCTCGGTAG
CGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAGCGGGGCAAG
AACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCGGAAACAACA
GCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCGTCGACGAGG
ACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGACGAGGAGGAC
GACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGTGGTGGAGGT
GTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAATGGTGACCG
TGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGCGTCAACTCG
TGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAACTATCTGCA
ACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCAGCCCGCCCA
GAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTGACCCAGTCG
CTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGATCACGGCCA
GGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTTATCATAGTA
TTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTA
BS09609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11347-PD | 1164 | CG11347-RD | 1..820 | 17..836 | 4100 | 100 | Plus |
CG11347-PB | 1164 | CG11347-RB | 1..820 | 17..836 | 4100 | 100 | Plus |
CG11347-PA | 1164 | CG11347-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
CG11347-PC | 822 | CG11347-RC | 32..478 | 390..836 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-RE | 1906 | CG11347-RE | 381..1200 | 17..836 | 4100 | 100 | Plus |
DOR-RA | 2022 | CG11347-RA | 497..1316 | 17..836 | 4100 | 100 | Plus |
DOR-RB | 2311 | CG11347-RB | 404..1223 | 17..836 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4418780..4419172 | 388..780 | 1965 | 100 | Plus |
3L | 28110227 | 3L | 4418122..4418494 | 17..389 | 1865 | 100 | Plus |
3L | 28110227 | 3L | 4419428..4419484 | 780..836 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:28:05 has no hits.
BS09609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:06 Download gff for
BS09609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-PB | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:49 Download gff for
BS09609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:21:19 Download gff for
BS09609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 399..1222 | 11..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:50:56 Download gff for
BS09609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 399..1222 | 11..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:50:56 Download gff for
BS09609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4418117..4418494 | 11..389 | 99 | -> | Plus |
3L | 4418782..4419172 | 390..780 | 100 | -> | Plus |
3L | 4419429..4419483 | 781..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:21:19 Download gff for
BS09609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4418117..4418494 | 11..389 | 99 | -> | Plus |
arm_3L | 4418782..4419172 | 390..780 | 100 | -> | Plus |
arm_3L | 4419429..4419483 | 781..835 | 100 | | Plus |
BS09609.complete Sequence
1196 bp (1196 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636451
> BS09609.complete
GAAGTTATCAGTCGACATGTTAAGCAGCCTCGCCTCGTATCTCTTTGGAT
CAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCCCAGAACCGA
ACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCCGACCAGCGA
TCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGCCCTCGGTAG
CGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAGCGGGGCAAG
AACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCGGAAACAACA
GCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCGTCGACGAGG
ACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGACGAGGAGGAC
GACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGTGGTGGAGGT
GTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAATGGTGACCG
TGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGCGTCAACTCG
TGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAACTATCTGCA
ACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCAGCCCGCCCA
GAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTGACCCAGTCG
CTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGATCACGGCCA
GGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTTATCATAGTA
TTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTAATCTTGATCTCGGG
GTGTCGACGGAGGTGCCGCAGCAGCGGGAGGAGCCCGAGCCGGAGGCTGA
GCCGCAGGATCAGCGCCAGGCTCTCCAGGAGCAGCAACGTGCCCCCAACG
CTCGCTTCGATAGCCATGCGGCCGTACAGTTGAAGCAGCAGACGCTGGCT
CGTCAGAGTCAGAAGAGCAAGAACAAGAAGGAGCACCAGCAGCTCTGCCG
CAGTGCCATCAAGCGGGCCAACAAGGTGCGCGACTTCCAGGCCAAGGCCA
ACCGCCCGCGCCGCTCGGAGATGCAGCACTGCAAGCTGGTCAGCGGCGCC
AACAACAACCGCAGCAAGTGCTGCTACTAGAAGCTTTCTAGACCAT
BS09609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-RE | 1164 | CG11347-PE | 1..1164 | 17..1180 | 5820 | 100 | Plus |
DOR-RA | 1164 | CG11347-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
DOR-RB | 1164 | CG11347-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-RE | 1906 | CG11347-RE | 381..1544 | 17..1180 | 5820 | 100 | Plus |
DOR-RA | 2022 | CG11347-RA | 497..1660 | 17..1180 | 5820 | 100 | Plus |
DOR-RB | 2311 | CG11347-RB | 404..1567 | 17..1180 | 5820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4418780..4419172 | 388..780 | 1965 | 100 | Plus |
3L | 28110227 | 3L | 4418122..4418494 | 17..389 | 1865 | 100 | Plus |
3L | 28110227 | 3L | 4419428..4419663 | 780..1015 | 1180 | 100 | Plus |
3L | 28110227 | 3L | 4419738..4419904 | 1014..1180 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:42:40 has no hits.
BS09609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:46 Download gff for
BS09609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-RA | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:50 Download gff for
BS09609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-RA | 490..1660 | 11..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:01 Download gff for
BS09609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 409..1567 | 22..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:46 Download gff for
BS09609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11347-RA | 490..1660 | 11..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:41 Download gff for
BS09609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DOR-RB | 409..1567 | 22..1180 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:41 Download gff for
BS09609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4419740..4419904 | 1016..1180 | 100 | | Plus |
3L | 4418782..4419172 | 390..780 | 100 | -> | Plus |
3L | 4418127..4418494 | 22..389 | 100 | -> | Plus |
3L | 4419429..4419663 | 781..1015 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:01 Download gff for
BS09609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4418127..4418494 | 22..389 | 100 | -> | Plus |
arm_3L | 4418782..4419172 | 390..780 | 100 | -> | Plus |
arm_3L | 4419429..4419663 | 781..1015 | 100 | -> | Plus |
arm_3L | 4419740..4419904 | 1016..1180 | 100 | | Plus |
BS09609.pep Sequence
Translation from 16 to 1179
> BS09609.pep
MLSSLASYLFGSATSDSISQEANPAQNRTNASNANSSSSPGPTSDPAAGD
VIEVTSSTPSVAGSSRGAVRASNGKRGKNRRGKQQRTNQQQRKQQPAITK
LLTPSGEIVDEDFDEDEWYIVEKEDEEDDSLPRSDSEEELSVVEVSQPRG
GSNNASSPMVTVATGTAFNCRRRQGVNSCSLYSGPRPQQQRNYLQRSRVS
RPLSISTLSPPRSVPALGAGDHDTLTQSLYVASPSGSDQGQDHGQGANVL
MEESCMSVYHSIRSTQEGTDSFVNLDLGVSTEVPQQREEPEPEAEPQDQR
QALQEQQRAPNARFDSHAAVQLKQQTLARQSQKSKNKKEHQQLCRSAIKR
ANKVRDFQAKANRPRRSEMQHCKLVSGANNNRSKCCY*
BS09609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DOR-PE | 387 | CG11347-PE | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PA | 387 | CG11347-PA | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PB | 387 | CG11347-PB | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PD | 387 | CG11347-PD | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PH | 417 | CG11347-PH | 1..417 | 1..387 | 1929 | 92.6 | Plus |