Clone BS09609 Report

Search the DGRC for BS09609

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptDOR-RA
Protein status:BS09609.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09609.3prime Sequence

854 bp (789 high quality bases) assembled on 2006-04-19

> BS09609.3prime
ATGGTCTAGAAAGCTTCTAGTAGCAGCACTTGCTGCGGTTGTTGTTGGCG
CCGCTGACCAGCTTGCAGTGCTGCATCTCCGAGCGGCGCGGGCGGTTGGC
CTTGGCCTGGAAGTCGCGCACCTTGTTGGCCCGCTTGATGGCACTGCGGC
AGAGCTGCTGGTGCTCCTTCTTGTTCTTGCTCTTCTGACTCTGACGAGCC
AGCGTCTGCTGCTTCAACTGTACGGCCGCATGGCTATCGAAGCGAGCGTT
GGGGGCACGTTGCTGCTCCTGGAGAGCCTGGCGCTGATCCTGCGGCTCAG
CCTCCGGCTCGGGCTCCTCCCGCTGCTGCGGCACCTCCGTCGACACCCCG
AGATCAAGATTAACAAAACTATCGGTTCCCTCCTGGGTGGACCTAATACT
ATGATAAACGGACATGCAGGACTCCTCCATCAGCACGTTAGCACCCTGGC
CGTGATCCTGACCCTGGTCGCTGCCGCTCGGCGAGGCCACGTACAGCGAC
TGGGTCAGCGTGTCATGATCGCCGGCCCCCAGGGCGGGCACACTTCTGGG
CGGGCTGAGGGTGCTGATGCTCAGCGGCCGGGAGACGCGCGAGCGTTGCA
GATAGTTGCGTTGCTGCTGCGGCCGGGGCCCACTGTACAGGGAACACGAG
TTGACGCCCTGCCGGCGGCGGCAGTTGAACGCCGTGCCAGTGGCCACGGT
CACCATTGGAGAGGAGGCGTTGTTGGAACCGCCCCGCGGCTGCGACACCT
CCACCACGGAGAGCTCCTCCTCGGAGTCGCTGCGTGGCAGGGAGTCGTCC
TCCTCGTCTTCCTTCTCCACAATGTACCATTCGTCCTCGTCGAAGCCCTC
GTCG

BS09609.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11347-PD 1164 CG11347-RD 327..1164 854..17 4165 99.8 Minus
CG11347-PB 1164 CG11347-RB 327..1164 854..17 4165 99.8 Minus
CG11347-PA 1164 CG11347-RA 327..1164 854..17 4165 99.8 Minus
CG11347-PC 822 CG11347-RC 32..822 807..17 3955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-RE 1906 CG11347-RE 707..1544 854..17 4175 99.9 Minus
DOR-RA 2022 CG11347-RA 823..1660 854..17 4175 99.9 Minus
DOR-RB 2311 CG11347-RB 730..1567 854..17 4175 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4418780..4419172 809..417 1965 100 Minus
3L 28110227 3L 4419428..4419663 417..182 1180 100 Minus
3L 28110227 3L 4419738..4419904 183..17 835 100 Minus
3L 28110227 3L 4418448..4418494 854..808 220 97.9 Minus
Blast to na_te.dros performed on 2015-02-10 20:56:08 has no hits.

BS09609.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:05 Download gff for BS09609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11347-PB 327..1164 17..854 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:48 Download gff for BS09609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11347-PA 327..1164 17..854 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:38:32 Download gff for BS09609.3prime
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 730..1569 13..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:25 Download gff for BS09609.3prime
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 730..1569 13..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:25 Download gff for BS09609.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4419429..4419663 182..416 100 -> Minus
3L 4419740..4419906 13..181 98   Minus
3L 4418782..4419172 417..807 100 -> Minus
3L 4418448..4418494 808..854 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:38:32 Download gff for BS09609.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4418448..4418494 808..854 97 -> Minus
arm_3L 4418782..4419172 417..807 100 -> Minus
arm_3L 4419429..4419663 182..416 100 -> Minus
arm_3L 4419740..4419906 13..181 98   Minus

BS09609.5prime Sequence

836 bp (810 high quality bases) assembled on 2006-04-19

> BS09609.5prime
GAAGTTATCAGTCGACATGTTAAGCAGCCTCGCCTCGTATCTCTTTGGAT
CAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCCCAGAACCGA
ACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCCGACCAGCGA
TCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGCCCTCGGTAG
CGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAGCGGGGCAAG
AACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCGGAAACAACA
GCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCGTCGACGAGG
ACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGACGAGGAGGAC
GACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGTGGTGGAGGT
GTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAATGGTGACCG
TGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGCGTCAACTCG
TGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAACTATCTGCA
ACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCAGCCCGCCCA
GAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTGACCCAGTCG
CTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGATCACGGCCA
GGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTTATCATAGTA
TTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTA

BS09609.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11347-PD 1164 CG11347-RD 1..820 17..836 4100 100 Plus
CG11347-PB 1164 CG11347-RB 1..820 17..836 4100 100 Plus
CG11347-PA 1164 CG11347-RA 1..820 17..836 4100 100 Plus
CG11347-PC 822 CG11347-RC 32..478 390..836 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-RE 1906 CG11347-RE 381..1200 17..836 4100 100 Plus
DOR-RA 2022 CG11347-RA 497..1316 17..836 4100 100 Plus
DOR-RB 2311 CG11347-RB 404..1223 17..836 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4418780..4419172 388..780 1965 100 Plus
3L 28110227 3L 4418122..4418494 17..389 1865 100 Plus
3L 28110227 3L 4419428..4419484 780..836 285 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:28:05 has no hits.

BS09609.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:06 Download gff for BS09609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11347-PB 1..819 17..835 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:49 Download gff for BS09609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11347-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:21:19 Download gff for BS09609.5prime
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 399..1222 11..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:50:56 Download gff for BS09609.5prime
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 399..1222 11..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:50:56 Download gff for BS09609.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4418117..4418494 11..389 99 -> Plus
3L 4418782..4419172 390..780 100 -> Plus
3L 4419429..4419483 781..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:21:19 Download gff for BS09609.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4418117..4418494 11..389 99 -> Plus
arm_3L 4418782..4419172 390..780 100 -> Plus
arm_3L 4419429..4419483 781..835 100   Plus

BS09609.complete Sequence

1196 bp (1196 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636451

> BS09609.complete
GAAGTTATCAGTCGACATGTTAAGCAGCCTCGCCTCGTATCTCTTTGGAT
CAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCCCAGAACCGA
ACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCCGACCAGCGA
TCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGCCCTCGGTAG
CGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAGCGGGGCAAG
AACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCGGAAACAACA
GCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCGTCGACGAGG
ACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGACGAGGAGGAC
GACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGTGGTGGAGGT
GTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAATGGTGACCG
TGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGCGTCAACTCG
TGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAACTATCTGCA
ACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCAGCCCGCCCA
GAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTGACCCAGTCG
CTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGATCACGGCCA
GGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTTATCATAGTA
TTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTAATCTTGATCTCGGG
GTGTCGACGGAGGTGCCGCAGCAGCGGGAGGAGCCCGAGCCGGAGGCTGA
GCCGCAGGATCAGCGCCAGGCTCTCCAGGAGCAGCAACGTGCCCCCAACG
CTCGCTTCGATAGCCATGCGGCCGTACAGTTGAAGCAGCAGACGCTGGCT
CGTCAGAGTCAGAAGAGCAAGAACAAGAAGGAGCACCAGCAGCTCTGCCG
CAGTGCCATCAAGCGGGCCAACAAGGTGCGCGACTTCCAGGCCAAGGCCA
ACCGCCCGCGCCGCTCGGAGATGCAGCACTGCAAGCTGGTCAGCGGCGCC
AACAACAACCGCAGCAAGTGCTGCTACTAGAAGCTTTCTAGACCAT

BS09609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-RE 1164 CG11347-PE 1..1164 17..1180 5820 100 Plus
DOR-RA 1164 CG11347-PA 1..1164 17..1180 5820 100 Plus
DOR-RB 1164 CG11347-PB 1..1164 17..1180 5820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-RE 1906 CG11347-RE 381..1544 17..1180 5820 100 Plus
DOR-RA 2022 CG11347-RA 497..1660 17..1180 5820 100 Plus
DOR-RB 2311 CG11347-RB 404..1567 17..1180 5820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4418780..4419172 388..780 1965 100 Plus
3L 28110227 3L 4418122..4418494 17..389 1865 100 Plus
3L 28110227 3L 4419428..4419663 780..1015 1180 100 Plus
3L 28110227 3L 4419738..4419904 1014..1180 835 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:42:40 has no hits.

BS09609.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:46 Download gff for BS09609.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RA 1..1164 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:50 Download gff for BS09609.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RA 490..1660 11..1184 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:01 Download gff for BS09609.complete
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 409..1567 22..1180 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:46 Download gff for BS09609.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RA 490..1660 11..1184 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:41 Download gff for BS09609.complete
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 409..1567 22..1180 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:41 Download gff for BS09609.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4419740..4419904 1016..1180 100   Plus
3L 4418782..4419172 390..780 100 -> Plus
3L 4418127..4418494 22..389 100 -> Plus
3L 4419429..4419663 781..1015 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:01 Download gff for BS09609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4418127..4418494 22..389 100 -> Plus
arm_3L 4418782..4419172 390..780 100 -> Plus
arm_3L 4419429..4419663 781..1015 100 -> Plus
arm_3L 4419740..4419904 1016..1180 100   Plus

BS09609.pep Sequence

Translation from 16 to 1179

> BS09609.pep
MLSSLASYLFGSATSDSISQEANPAQNRTNASNANSSSSPGPTSDPAAGD
VIEVTSSTPSVAGSSRGAVRASNGKRGKNRRGKQQRTNQQQRKQQPAITK
LLTPSGEIVDEDFDEDEWYIVEKEDEEDDSLPRSDSEEELSVVEVSQPRG
GSNNASSPMVTVATGTAFNCRRRQGVNSCSLYSGPRPQQQRNYLQRSRVS
RPLSISTLSPPRSVPALGAGDHDTLTQSLYVASPSGSDQGQDHGQGANVL
MEESCMSVYHSIRSTQEGTDSFVNLDLGVSTEVPQQREEPEPEAEPQDQR
QALQEQQRAPNARFDSHAAVQLKQQTLARQSQKSKNKKEHQQLCRSAIKR
ANKVRDFQAKANRPRRSEMQHCKLVSGANNNRSKCCY*

BS09609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-PE 387 CG11347-PE 1..387 1..387 1980 100 Plus
DOR-PA 387 CG11347-PA 1..387 1..387 1980 100 Plus
DOR-PB 387 CG11347-PB 1..387 1..387 1980 100 Plus
DOR-PD 387 CG11347-PD 1..387 1..387 1980 100 Plus
DOR-PH 417 CG11347-PH 1..417 1..387 1929 92.6 Plus