Clone BS09612 Report

Search the DGRC for BS09612

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG9772-RC
Protein status:BS09612.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09612.3prime Sequence

880 bp (812 high quality bases) assembled on 2006-04-19

> BS09612.3prime
ATGGTCTAGAAAGCTTTTAGATGTAACTTACACTAGTCTGGGCCAGACGT
ATTACAAGGACTCCCCGCCGTACAATTTGCTCGAGGGCACCTGGTCTAAT
TGTCCGCAAACCCAAATCTAGCCTTGTCCACAAAGTCTCATCGCGAGAGC
AGCGGTTAAAGCGTCGACAAACGGTAGCCATGCGCAGCAGCGTCTTCTTC
GGGAGCCACTTAAAGATGTCAAGTAGTATTTCGTCTGAAAGTCTTTCAAA
GTAGTTTATGCCGCTGTTGATGTGGGCACTCATGGCCGGGGTGCGAAACA
CAAAGAAACTGTCCGCTGCCACTATTCGGGTTGTAATATTTGTTGTCGAG
GGCTTTTTTGCCTGGCGAACTTGCGCCAACCTGCTGGTTGATGGCTGAAA
ATTGAGCGAAGCAGTCCCATCAATCTGGTTGTTACAGGTGACTGCAGCCA
GGGGGTTGCGCAAACGTTTGCTGGGCGAGTTTGAATTGCCGCTACCTTCA
GAACCCAACGACGAGCGCTTAGCCTGCGCCAGAATCTGCAGCTTCTCGGC
CGATTGACGGGACATCGACAGTGAATCCTCCACAGCTGGGCTATCCAGTG
TGATGTCCCCCGTAGAGCCCAGACTTAGCCGTTGCGTGTGCTGTAGCTGG
TGCGCCATGCGCGACACACTGGCGCACGGGGTCGTCTCATTTGAGTTGTC
GTCGCTGGTGGCGCTAACCGCCAAAGCGATGGCCGAGAGGGCTGAGGAGC
TGCTTTCTTCGGAATCAAGCATTCCGATTCCCATCTCTTCTAGGGCCTCA
AAAGTTAGTGCCGAGGGCGAGGAAGGGTGCTCGTAGTGCGATGACTTCGT
AGTGGAAACTAGAGCGCCCCAACAGAGACG

BS09612.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9772-PC 948 CG9772-RC 96..948 869..17 4265 100 Minus
CG9772-PB 1746 CG9772-RB 162..999 869..32 4190 100 Minus
CG9772-PA 1680 CG9772-RA 96..933 869..32 4190 100 Minus
CG9772-PD 1500 CG9772-RD 1..753 784..32 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Skp2-RE 1853 CG9772-RE 152..1001 880..32 4225 99.9 Minus
Skp2-RA 2412 CG9772-RA 152..1001 880..32 4225 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4336454..4337318 17..880 4275 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 01:28:59 has no hits.

BS09612.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:07 Download gff for BS09612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9772-PC 84..948 17..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:51 Download gff for BS09612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9772-PC 84..948 17..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:08:34 Download gff for BS09612.3prime
Subject Subject Range Query Range Percent Splice Strand
Skp2-RB 224..1073 32..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:16 Download gff for BS09612.3prime
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 152..1001 32..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:16 Download gff for BS09612.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4336450..4337318 11..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:08:34 Download gff for BS09612.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 162172..163040 11..880 99   Plus

BS09612.5prime Sequence

936 bp (852 high quality bases) assembled on 2006-04-19

> BS09612.5prime
GAAGTTATCAGTCGACATGAGCAGTCGCAAGCACAGAGGCTCCGAAAACA
TGGAAAATTTGTGCCCGGTGACCAGAAAGCGCTCGACTAATAAGAACCAC
GTCTCTGTTGTGGGCGCTCTAGTTTCCACTACGAAGTCATCGCACTACGA
GCACCCTTCCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGG
GAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCC
ATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTCAAATGAGACGAC
CCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTACAGCACACGCAAC
GGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGATAGCCCAGCTGTG
GAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCT
GGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAA
ACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAAC
AACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAG
GTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAATATTACAA
CCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATG
AGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAGACTTTCAGACGA
AATACTACTTGACATCTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCA
TGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGAGACTTTG
TGGACAAGGCTAGATTTGGGTTTGCGGACNATTAGACCAGGTGCCCTCGA
GCAAATTGTACGGCGGGGGAGTCTTTGTAATACGTC

BS09612.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9772-PA 1680 CG9772-RA 1..902 17..918 4491 99.8 Plus
CG9772-PC 948 CG9772-RC 1..902 17..918 4491 99.8 Plus
CG9772-PB 1746 CG9772-RB 120..968 70..918 4226 99.8 Plus
CG9772-PD 1500 CG9772-RD 1..722 197..918 3591 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Skp2-RE 1853 CG9772-RE 69..987 17..936 4549 99.7 Plus
Skp2-RA 2412 CG9772-RA 69..987 17..936 4549 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4336483..4337345 936..73 4244 99.7 Minus
3R 32079331 3R 4337548..4337606 75..17 295 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:58:11 has no hits.

BS09612.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:08 Download gff for BS09612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9772-PA 1..919 17..936 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:52 Download gff for BS09612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9772-PC 1..919 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:55 Download gff for BS09612.5prime
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 75..999 11..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:16 Download gff for BS09612.5prime
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 63..987 11..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:16 Download gff for BS09612.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4336483..4337342 76..936 99 <- Minus
3R 4337548..4337612 11..75 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:55 Download gff for BS09612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 162205..163064 76..936 99 <- Minus
arm_3R 163270..163334 11..75 95   Minus

BS09612.complete Sequence

980 bp (980 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636452

> BS09612.complete
GAAGTTATCAGTCGACATGAGCAGTCGCAAGCACAGAGGCTCCGAAAACA
TGGAAAATTTGTGCCCGGTGACCAGAAAGCGCTCGACTAATAAGAACCAC
GTCTCTGTTGTGGGCGCTCTAGTTTCCACTACGAAGTCATCGCACTACGA
GCACCCTTCCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGG
GAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCC
ATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTCAAATGAGACGAC
CCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTACAGCACACGCAAC
GGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGATAGCCCAGCTGTG
GAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCT
GGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAA
ACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAAC
AACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAG
GTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAATATTACAA
CCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATG
AGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAGACTTTCAGACGA
AATACTACTTGACATCTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCA
TGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGAGACTTTG
TGGACAAGGCTAGATTTGGGTTTGCGGACAATTAGACCAGGTGCCCTCGA
GCAAATTGTACGGCGGGGAGTCCTTGTAATACGTCTGGCCCAGACTAGTG
TAAGTTACATCTAAAAGCTTTCTAGACCAT

BS09612.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Skp2-RE 1680 CG9772-PE 1..933 17..949 4665 100 Plus
Skp2-RA 1680 CG9772-PA 1..933 17..949 4665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Skp2-RE 1853 CG9772-RE 69..1001 17..949 4665 100 Plus
Skp2-RA 2412 CG9772-RA 69..1001 17..949 4665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4336454..4337345 964..73 4460 100 Minus
3R 32079331 3R 4337548..4337606 75..17 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:59:51 has no hits.

BS09612.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:47 Download gff for BS09612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RC 1..948 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:52 Download gff for BS09612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RC 75..1032 11..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:50 Download gff for BS09612.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 81..1013 17..949 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:47 Download gff for BS09612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9772-RC 75..1032 11..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:09 Download gff for BS09612.complete
Subject Subject Range Query Range Percent Splice Strand
Skp2-RA 69..1001 17..949 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:09 Download gff for BS09612.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4336456..4337342 76..962 100 <- Minus
3R 4337548..4337606 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:50 Download gff for BS09612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 162178..163064 76..962 100 <- Minus
arm_3R 163270..163328 17..75 100   Minus

BS09612.pep Sequence

Translation from 16 to 963

> BS09612.pep
MSSRKHRGSENMENLCPVTRKRSTNKNHVSVVGALVSTTKSSHYEHPSSP
SALTFEALEEMGIGMLDSEESSSSALSAIALAVSATSDDNSNETTPCASV
SRMAHQLQHTQRLSLGSTGDITLDSPAVEDSLSMSRQSAEKLQILAQAKR
SSLGSEGSGNSNSPSKRLRNPLAAVTCNNQIDGTASLNFQPSTSRLAQVR
QAKKPSTTNITTRIVAADSFFVFRTPAMSAHINSGINYFERLSDEILLDI
FKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRR
GVLVIRLAQTSVSYI*

BS09612.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Skp2-PE 559 CG9772-PE 1..312 1..312 1555 99.7 Plus
Skp2-PA 559 CG9772-PA 1..312 1..312 1555 99.7 Plus