Clone Sequence Records
BS09612.3prime Sequence
880 bp (812 high quality bases) assembled on 2006-04-19
> BS09612.3prime
ATGGTCTAGAAAGCTTTTAGATGTAACTTACACTAGTCTGGGCCAGACGT
ATTACAAGGACTCCCCGCCGTACAATTTGCTCGAGGGCACCTGGTCTAAT
TGTCCGCAAACCCAAATCTAGCCTTGTCCACAAAGTCTCATCGCGAGAGC
AGCGGTTAAAGCGTCGACAAACGGTAGCCATGCGCAGCAGCGTCTTCTTC
GGGAGCCACTTAAAGATGTCAAGTAGTATTTCGTCTGAAAGTCTTTCAAA
GTAGTTTATGCCGCTGTTGATGTGGGCACTCATGGCCGGGGTGCGAAACA
CAAAGAAACTGTCCGCTGCCACTATTCGGGTTGTAATATTTGTTGTCGAG
GGCTTTTTTGCCTGGCGAACTTGCGCCAACCTGCTGGTTGATGGCTGAAA
ATTGAGCGAAGCAGTCCCATCAATCTGGTTGTTACAGGTGACTGCAGCCA
GGGGGTTGCGCAAACGTTTGCTGGGCGAGTTTGAATTGCCGCTACCTTCA
GAACCCAACGACGAGCGCTTAGCCTGCGCCAGAATCTGCAGCTTCTCGGC
CGATTGACGGGACATCGACAGTGAATCCTCCACAGCTGGGCTATCCAGTG
TGATGTCCCCCGTAGAGCCCAGACTTAGCCGTTGCGTGTGCTGTAGCTGG
TGCGCCATGCGCGACACACTGGCGCACGGGGTCGTCTCATTTGAGTTGTC
GTCGCTGGTGGCGCTAACCGCCAAAGCGATGGCCGAGAGGGCTGAGGAGC
TGCTTTCTTCGGAATCAAGCATTCCGATTCCCATCTCTTCTAGGGCCTCA
AAAGTTAGTGCCGAGGGCGAGGAAGGGTGCTCGTAGTGCGATGACTTCGT
AGTGGAAACTAGAGCGCCCCAACAGAGACG
BS09612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9772-PC | 948 | CG9772-RC | 96..948 | 869..17 | 4265 | 100 | Minus |
CG9772-PB | 1746 | CG9772-RB | 162..999 | 869..32 | 4190 | 100 | Minus |
CG9772-PA | 1680 | CG9772-RA | 96..933 | 869..32 | 4190 | 100 | Minus |
CG9772-PD | 1500 | CG9772-RD | 1..753 | 784..32 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Skp2-RE | 1853 | CG9772-RE | 152..1001 | 880..32 | 4225 | 99.9 | Minus |
Skp2-RA | 2412 | CG9772-RA | 152..1001 | 880..32 | 4225 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4336454..4337318 | 17..880 | 4275 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:28:59 has no hits.
BS09612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:07 Download gff for
BS09612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9772-PC | 84..948 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:51 Download gff for
BS09612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9772-PC | 84..948 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:08:34 Download gff for
BS09612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Skp2-RB | 224..1073 | 32..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:16 Download gff for
BS09612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Skp2-RA | 152..1001 | 32..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:16 Download gff for
BS09612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4336450..4337318 | 11..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:08:34 Download gff for
BS09612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 162172..163040 | 11..880 | 99 | | Plus |
BS09612.5prime Sequence
936 bp (852 high quality bases) assembled on 2006-04-19
> BS09612.5prime
GAAGTTATCAGTCGACATGAGCAGTCGCAAGCACAGAGGCTCCGAAAACA
TGGAAAATTTGTGCCCGGTGACCAGAAAGCGCTCGACTAATAAGAACCAC
GTCTCTGTTGTGGGCGCTCTAGTTTCCACTACGAAGTCATCGCACTACGA
GCACCCTTCCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGG
GAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCC
ATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTCAAATGAGACGAC
CCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTACAGCACACGCAAC
GGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGATAGCCCAGCTGTG
GAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCT
GGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAA
ACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAAC
AACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAG
GTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAATATTACAA
CCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATG
AGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAGACTTTCAGACGA
AATACTACTTGACATCTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCA
TGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGAGACTTTG
TGGACAAGGCTAGATTTGGGTTTGCGGACNATTAGACCAGGTGCCCTCGA
GCAAATTGTACGGCGGGGGAGTCTTTGTAATACGTC
BS09612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9772-PA | 1680 | CG9772-RA | 1..902 | 17..918 | 4491 | 99.8 | Plus |
CG9772-PC | 948 | CG9772-RC | 1..902 | 17..918 | 4491 | 99.8 | Plus |
CG9772-PB | 1746 | CG9772-RB | 120..968 | 70..918 | 4226 | 99.8 | Plus |
CG9772-PD | 1500 | CG9772-RD | 1..722 | 197..918 | 3591 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Skp2-RE | 1853 | CG9772-RE | 69..987 | 17..936 | 4549 | 99.7 | Plus |
Skp2-RA | 2412 | CG9772-RA | 69..987 | 17..936 | 4549 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4336483..4337345 | 936..73 | 4244 | 99.7 | Minus |
3R | 32079331 | 3R | 4337548..4337606 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:58:11 has no hits.
BS09612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:08 Download gff for
BS09612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9772-PA | 1..919 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:52 Download gff for
BS09612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9772-PC | 1..919 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:55 Download gff for
BS09612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Skp2-RA | 75..999 | 11..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:16 Download gff for
BS09612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Skp2-RA | 63..987 | 11..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:16 Download gff for
BS09612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4336483..4337342 | 76..936 | 99 | <- | Minus |
3R | 4337548..4337612 | 11..75 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:55 Download gff for
BS09612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 162205..163064 | 76..936 | 99 | <- | Minus |
arm_3R | 163270..163334 | 11..75 | 95 | | Minus |
BS09612.complete Sequence
980 bp (980 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636452
> BS09612.complete
GAAGTTATCAGTCGACATGAGCAGTCGCAAGCACAGAGGCTCCGAAAACA
TGGAAAATTTGTGCCCGGTGACCAGAAAGCGCTCGACTAATAAGAACCAC
GTCTCTGTTGTGGGCGCTCTAGTTTCCACTACGAAGTCATCGCACTACGA
GCACCCTTCCTCGCCCTCGGCACTAACTTTTGAGGCCCTAGAAGAGATGG
GAATCGGAATGCTTGATTCCGAAGAAAGCAGCTCCTCAGCCCTCTCGGCC
ATCGCTTTGGCGGTTAGCGCCACCAGCGACGACAACTCAAATGAGACGAC
CCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAGCTACAGCACACGCAAC
GGCTAAGTCTGGGCTCTACGGGGGACATCACACTGGATAGCCCAGCTGTG
GAGGATTCACTGTCGATGTCCCGTCAATCGGCCGAGAAGCTGCAGATTCT
GGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAAGGTAGCGGCAATTCAA
ACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGCTGCAGTCACCTGTAAC
AACCAGATTGATGGGACTGCTTCGCTCAATTTTCAGCCATCAACCAGCAG
GTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCGACAACAAATATTACAA
CCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTTTCGCACCCCGGCCATG
AGTGCCCACATCAACAGCGGCATAAACTACTTTGAAAGACTTTCAGACGA
AATACTACTTGACATCTTTAAGTGGCTCCCGAAGAAGACGCTGCTGCGCA
TGGCTACCGTTTGTCGACGCTTTAACCGCTGCTCTCGCGATGAGACTTTG
TGGACAAGGCTAGATTTGGGTTTGCGGACAATTAGACCAGGTGCCCTCGA
GCAAATTGTACGGCGGGGAGTCCTTGTAATACGTCTGGCCCAGACTAGTG
TAAGTTACATCTAAAAGCTTTCTAGACCAT
BS09612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Skp2-RE | 1680 | CG9772-PE | 1..933 | 17..949 | 4665 | 100 | Plus |
Skp2-RA | 1680 | CG9772-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Skp2-RE | 1853 | CG9772-RE | 69..1001 | 17..949 | 4665 | 100 | Plus |
Skp2-RA | 2412 | CG9772-RA | 69..1001 | 17..949 | 4665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4336454..4337345 | 964..73 | 4460 | 100 | Minus |
3R | 32079331 | 3R | 4337548..4337606 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:59:51 has no hits.
BS09612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:47 Download gff for
BS09612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9772-RC | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:52 Download gff for
BS09612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9772-RC | 75..1032 | 11..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:50 Download gff for
BS09612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Skp2-RA | 81..1013 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:47 Download gff for
BS09612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9772-RC | 75..1032 | 11..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:09 Download gff for
BS09612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Skp2-RA | 69..1001 | 17..949 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:09 Download gff for
BS09612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4336456..4337342 | 76..962 | 100 | <- | Minus |
3R | 4337548..4337606 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:50 Download gff for
BS09612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 162178..163064 | 76..962 | 100 | <- | Minus |
arm_3R | 163270..163328 | 17..75 | 100 | | Minus |
BS09612.pep Sequence
Translation from 16 to 963
> BS09612.pep
MSSRKHRGSENMENLCPVTRKRSTNKNHVSVVGALVSTTKSSHYEHPSSP
SALTFEALEEMGIGMLDSEESSSSALSAIALAVSATSDDNSNETTPCASV
SRMAHQLQHTQRLSLGSTGDITLDSPAVEDSLSMSRQSAEKLQILAQAKR
SSLGSEGSGNSNSPSKRLRNPLAAVTCNNQIDGTASLNFQPSTSRLAQVR
QAKKPSTTNITTRIVAADSFFVFRTPAMSAHINSGINYFERLSDEILLDI
FKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRR
GVLVIRLAQTSVSYI*
BS09612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Skp2-PE | 559 | CG9772-PE | 1..312 | 1..312 | 1555 | 99.7 | Plus |
Skp2-PA | 559 | CG9772-PA | 1..312 | 1..312 | 1555 | 99.7 | Plus |