Clone Sequence Records
BS09618.complete Sequence
1988 bp assembled on 2009-12-07
GenBank Submission: KX802804
> BS09618.complete
GAAGTTATCAGTCGACATGTTTAGCAACTTTAAGGAGCGTATTATTTCGG
CCATAGCGCCCGACTTGCCACCTCTGCCGGGCAACAGCGAGCGGGCTATT
GGCTCTGGAAGCGGTCACCATCACAGCTCGACGCACCAGCGACTCCGGTT
CGGCGCTTCCGGCGGACAGCCAATGCCGGACAAGTTCCCCTATGCCCGGC
CGCCCTTTCTGCAGCTTCTCACGCCGGACGAGCTGCGCGCCTCGGCGGAC
CACAATGTGCGGCCCATCATCGTGCCGCGGGACATCAACCTACTGCCCTG
GGGCACCGGATACGCCGAATGCGTCAACTCCGGAAAATCCGAGTGGAACG
AGGACCAGGGTGCCTTCTGCCGGCAAGTTCTTTCGGATCCGGAGCATAAA
CACCCAGATCTCCCGTACACATACTTCGGCATTTTCGACGGACACGCCGG
TTATGGGGCCGCACTGGCCGCCTCGCATCAGTTTCATCACATCCTGCACG
AGAAGCTAGTGGACTGCCTGGAGCTCCTCCTGCCACGGGATGCGGATGCC
ACGAATGGCGGCGGGGAAGGCAACAAGCTGAATCCCACTTTCCCGCACCC
CATTTACTTCCAGCGCCGGGTGACTAAGGACGAACTAATCATCGGGGCGC
TGGAGAGTGCCTTCTTCAACATGGACTCGTTGATAGCGCAGGACTGTGAT
CGTTATCGAGATGCTGGGGGTTGCACCGCCTGCGTTTCATTGTTTATCGA
TGGCAAGATGTATGTGGCCAATGCCGGCGACTCCAGAGCTGTGCTCTGCC
AGCGGCGTGCCACCCCCGAGAGGCCACAAACAAATACTGACTCCGGGATT
GAGCCGGATCCCTTAGAAGCTAGCTGTTATCCAGTGCCATTCTCGGCGGA
TCACACGCCTGAAACTGAGCGCGAACGCCTGCTGAATGTGGCCAGATTGA
AGCCTCACCTCATGGGGAAGCATTATGTGGCCATGGAGTACGCAAAGCGG
CCGCATATCAAGGACATGGGCCAGCGCATTCTCTGCCGACAGGGCACCAT
GCGTGGCTGGACATACAAAACTTTGACCATGGAAGACCTCTGCATGCCGG
TGGTCAATGGCGAGGGAAAAAGAAGTCGCTTGCTGGGTACGTTGGGGGTC
ACGCGCGGCTTTGGCGATCACGAGCTGCTAGCCATCAACACAGGTATTCA
GATAAAACCATTTCTCACGCCTCACCCCGATGTCAGGCAGCGGGATCTGA
CACAGGTGGTTTCAATTCCGGATGAGGACAACCGGGATGGCGACTACGGA
GTGCTCGTCATGGCCACCGATGGCCTGTGGGATGTGTCCGAAAATGACGC
CGTTTCACGCACCGTCTTCCAGACGCTCTCCAAATATTCAACGGAGAAAC
ATCGTTACACGATGGTCGCCCAGGAGCTGGTGGCCCGTGCTCGTGGCAAA
ATCAACGACTCCGGGCATTGGCGACTCGCAGATAGCAAGGCTGCAGCCAC
TGTTGATGACATCTCGGTGATTGTTATCCCGGTTTGCCAGTATTACAAAG
AGCACGTGGAGTGGACGCAAAACTACAAACGAGATCTCGAACATCGTCGC
CGCCAGGCCCAGGCCCATATGGCGCAGGAAGCGGTCAACGTGCTCAATGG
CGTGATTGCCGAGGAAGCTCACGTGGTTGAAGAGGAAGAGGAAGGCGAAG
TGGTTGTTCATGAGGCCAGGACTTCTCACAATCAAACGAAAGTTCCAAGG
CGGCTGGACGGGACACTCGACGAAACCCTGGTGGTAGAGCTGACCCCTTC
ACTGGAGCAAGTTCACATTCAGAACGCGGATTCAGCGGAAGGCGAATCCA
GCAAGGAGAACGTTAATGATAAGGACAAAGAGGCGTCCACGACGAGACAG
CAGTCACAGCAGCAGCAGCAACAACAACAACAACAACAACAGAAGGGTCG
CAAGGGCAAAGGCAAGCACTAGAAGCTTTCTAGACCAT
BS09618.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17598-RB | 1956 | CG17598-PB | 1..1956 | 17..1972 | 9780 | 100 | Plus |
| CG17598-RA | 1956 | CG17598-PA | 1..1956 | 17..1972 | 9780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17598-RB | 4272 | CG17598-RB | 287..2242 | 17..1972 | 9780 | 100 | Plus |
| CG17598-RA | 2662 | CG17598-RA | 287..2242 | 17..1972 | 9780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22537256..22538722 | 1838..372 | 7335 | 100 | Minus |
| X | 23542271 | X | 22539741..22540097 | 373..17 | 1785 | 100 | Minus |
| X | 23542271 | X | 22536861..22536995 | 1972..1838 | 675 | 100 | Minus |
| X | 23542271 | X | 16900442..16900481 | 1906..1945 | 185 | 97.5 | Plus |
Blast to na_te.dros performed 2014-11-28 02:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6803 | 1898..1976 | 169 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6826 | 1897..1959 | 166 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6824 | 1897..1976 | 165 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2621..2665 | 1897..1941 | 162 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2624..2672 | 1897..1945 | 155 | 79.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6835 | 1897..1945 | 155 | 79.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2415 | 1898..1976 | 151 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6847 | 1898..1945 | 150 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2489..2534 | 1897..1942 | 149 | 80.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2421 | 1897..1976 | 147 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6911 | 1888..1976 | 146 | 68.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3281..3357 | 1897..1967 | 145 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1120 | 1894..1945 | 143 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1031..1173 | 1804..1944 | 142 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2399..2442 | 1897..1940 | 139 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2444..2488 | 1897..1941 | 135 | 77.8 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 816..887 | 1869..1941 | 128 | 65.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1011 | 1906..1940 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1547..1597 | 1897..1946 | 117 | 72.5 | Plus |
BS09618.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:20 Download gff for
BS09618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-RA | 251..2200 | 23..1972 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:30 Download gff for
BS09618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-RA | 293..2242 | 23..1972 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:24 Download gff for
BS09618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-RA | 251..2200 | 23..1972 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:16 Download gff for
BS09618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-RA | 293..2242 | 23..1972 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:16 Download gff for
BS09618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22536861..22536994 | 1839..1972 | 100 | <- | Minus |
| X | 22537256..22538721 | 373..1838 | 100 | <- | Minus |
| X | 22539742..22540091 | 23..372 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:30 Download gff for
BS09618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21938697..21938830 | 1839..1972 | 100 | <- | Minus |
| arm_X | 21939092..21940557 | 373..1838 | 100 | <- | Minus |
| arm_X | 21941578..21941927 | 23..372 | 100 | | Minus |
BS09618.3prime Sequence
823 bp (821 high quality bases) assembled on 2006-04-19
> BS09618.3prime
ATGGTCTAGAAAGCTTCTAGTGCTTGCCTTTGCCCTTGCGACCCTTCTGT
TGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGTGACTGCTGTCTCGTCGT
GGACGCCTCTTTGTCCTTATCATTAACGTTCTCCTTGCTGGATTCGCCTT
CCGCTGAATCCGCGTTCTGAATGTGAACTTGCTCCAGTGAAGGGGTCAGC
TCTACCACCAGGGTTTCGTCGAGTGTCCCGTCCAGCCGCCTTGGAACTTT
CGTTTGATTGTGAGAAGTCCTGGCCTCATGAACAACCACTTCGCCTTCCT
CTTCCTCTTCAACCACGTGAGCTTCCTCGGCAATCACGCCATTGAGCACG
TTGACCGCTTCCTGCGCCATATGGGCCTGGGCCTGGCGGCGACGATGTTC
GAGATCTCGTTTGTAGTTTTGCGTCCACTCCACGTGCTCTTTGTAATACT
GGCAAACCGGGATAACAATCACCGAGATGTCATCAACAGTGGCTGCAGCC
TTGCTATCTGCGAGTCGCCAATGCCCGGAGTCGTTGATTTTGCCACGAGC
ACGGGCCACCAGCTCCTGGGCGACCATCGTGTAACGATGTTTCTCCGTTG
AATATTTGGAGAGCGTCTGGAAGACGGTGCGTGAAACGGCGTCATTTTCG
GACACATCCCACAGGCCATCGGTGGCCATGACGAGCACTCCGTAGTCGCC
ATCCCGGTTGTCCTCATCCGGAATTGAAACCACCTGTGTCAGATCCCGCT
GCCTGACATCGGGGTGAGGCGTGAGAAATGGTTTTATCTGAATACCTGTG
TTGATGGCTAGCAGCTCGTGATC
BS09618.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17598-PA | 1956 | CG17598-RA | 1150..1956 | 823..17 | 4035 | 100 | Minus |
| CG12690-PA | 3807 | CHES-1-like-RA | 874..908 | 82..48 | 175 | 100 | Minus |
| CG32133-PA | 6885 | CG32133-RA | 682..716 | 82..48 | 175 | 100 | Minus |
| CG3497-PA | 1785 | Su(H)-RA | 207..243 | 83..47 | 160 | 97.2 | Minus |
| CG16970-PA | 2127 | CG16970-RA | 454..485 | 82..51 | 160 | 100 | Minus |
| CG3905-PA | 4107 | Su(z)2-RA | 1816..1851 | 82..47 | 155 | 97.2 | Minus |
| CG12690-PA | 3807 | CHES-1-like-RA | 871..905 | 82..48 | 150 | 97.1 | Minus |
| CG12690-PA | 3807 | CHES-1-like-RA | 877..911 | 82..48 | 150 | 97.1 | Minus |
| CG32133-PA | 6885 | CG32133-RA | 679..713 | 82..48 | 150 | 97.1 | Minus |
| CG32133-PA | 6885 | CG32133-RA | 685..719 | 82..48 | 150 | 97.1 | Minus |
| CG33261-PI | 1704 | Trl-RI | 1404..1433 | 83..54 | 150 | 100 | Minus |
| CG33261-PA | 1749 | Trl-RA | 1404..1433 | 83..54 | 150 | 100 | Minus |
| CG33261-PF | 1749 | Trl-RF | 1404..1433 | 83..54 | 150 | 100 | Minus |
| CG33541-PA | 561 | CG33541-RA | 186..215 | 83..54 | 150 | 100 | Minus |
| CG4059-PA | 2412 | ftz-f1-RA | 186..215 | 82..53 | 150 | 100 | Minus |
| CG32498-PM | 2712 | dnc-RM | 50..84 | 82..48 | 150 | 97.1 | Minus |
| CG32296-PA | 4422 | Mrtf-RA | 2514..2543 | 83..54 | 150 | 100 | Minus |
| CG33261-PI | 1704 | Trl-RI | 1291..1319 | 82..54 | 145 | 100 | Minus |
| CG33261-PA | 1749 | Trl-RA | 1291..1319 | 82..54 | 145 | 100 | Minus |
| CG33261-PF | 1749 | Trl-RF | 1291..1319 | 82..54 | 145 | 100 | Minus |
| CG4710-PB | 750 | smi21F-RB | 39..67 | 82..54 | 145 | 100 | Minus |
| CG3327-PC | 3054 | E23-RC | 287..315 | 82..54 | 145 | 100 | Minus |
| CG17762-PD | 4413 | tomosyn-RD | 2160..2187 | 83..56 | 140 | 100 | Minus |
| CG8787-PB | 4683 | Asx-RB | 3029..3056 | 84..57 | 140 | 100 | Minus |
| CG8787-PA | 5010 | Asx-RA | 3029..3056 | 84..57 | 140 | 100 | Minus |
| CG2278-PA | 1803 | CG2278-RA | 1713..1739 | 83..57 | 135 | 100 | Minus |
| CG1455-PA | 1869 | CanA1-RA | 1689..1715 | 82..56 | 135 | 100 | Minus |
| CG32365-PA | 1887 | CG32365-RA | 565..596 | 79..48 | 135 | 96.8 | Minus |
| CG17888-PD | 1944 | Pdp1-RD | 128..154 | 83..57 | 135 | 100 | Minus |
| CG6700-PA | 2625 | CG6700-RA | 501..537 | 83..47 | 135 | 94.5 | Minus |
| CG10543-PB | 2670 | CG10543-RB | 2220..2246 | 83..57 | 135 | 100 | Minus |
| CG10543-PC | 3075 | CG10543-RC | 2625..2651 | 83..57 | 135 | 100 | Minus |
| CG10543-PA | 4905 | CG10543-RA | 4455..4481 | 83..57 | 135 | 100 | Minus |
| CG6964-PA | 5901 | Gug-RA | 3372..3398 | 83..57 | 135 | 100 | Minus |
| CG6964-PB | 5958 | Gug-RB | 3372..3398 | 83..57 | 135 | 100 | Minus |
| CG6964-PD | 5958 | Gug-RD | 3372..3398 | 83..57 | 135 | 100 | Minus |
| CG6964-PC | 5967 | Gug-RC | 3372..3398 | 83..57 | 135 | 100 | Minus |
| CG4013-PA | 10815 | Smr-RA | 80..111 | 82..51 | 135 | 96.8 | Minus |
| CG4013-PB | 10815 | Smr-RB | 80..111 | 82..51 | 135 | 96.8 | Minus |
| CG4013-PC | 10815 | Smr-RC | 80..111 | 82..51 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17598-RB | 4272 | CG17598-RB | 1436..2242 | 823..17 | 4035 | 100 | Minus |
| CG17598-RA | 2662 | CG17598-RA | 1436..2242 | 823..17 | 4035 | 100 | Minus |
| ptip-RA | 8068 | CG32133-RA | 949..993 | 92..48 | 180 | 95.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22537256..22537928 | 151..823 | 3365 | 100 | Plus |
| X | 23542271 | X | 22536861..22536995 | 17..151 | 675 | 100 | Plus |
| X | 23542271 | X | 16900442..16900481 | 83..44 | 185 | 97.5 | Minus |
Blast to na_te.dros performed 2015-02-11 12:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6803 | 91..13 | 169 | 71.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6826 | 92..30 | 166 | 76.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6824 | 92..13 | 165 | 70.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2621..2665 | 92..48 | 162 | 84.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2624..2672 | 92..44 | 155 | 79.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6835 | 92..44 | 155 | 79.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2415 | 91..13 | 151 | 68.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6847 | 91..44 | 150 | 79.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2489..2534 | 92..47 | 149 | 80.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2421 | 92..13 | 147 | 67.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6911 | 101..13 | 146 | 68.9 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3281..3357 | 92..22 | 145 | 71.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1120 | 95..44 | 143 | 75 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1031..1173 | 185..45 | 142 | 61.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2399..2442 | 92..49 | 139 | 79.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2444..2488 | 92..48 | 135 | 77.8 | Minus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 816..887 | 120..48 | 128 | 65.8 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1011 | 83..49 | 121 | 82.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1547..1597 | 92..43 | 117 | 72.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6502..6569 | 119..49 | 114 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2835..2879 | 88..44 | 108 | 71.1 | Minus |
BS09618.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:20 Download gff for
BS09618.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-PA | 1150..1956 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:09 Download gff for
BS09618.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-PA | 1150..1956 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:45:11 Download gff for
BS09618.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-RA | 1436..2242 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:57:18 Download gff for
BS09618.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-RA | 1436..2242 | 17..823 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:57:18 Download gff for
BS09618.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22536861..22536994 | 17..150 | 100 | <- | Plus |
| X | 22537256..22537928 | 151..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:45:11 Download gff for
BS09618.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21938697..21938830 | 17..150 | 100 | <- | Plus |
| arm_X | 21939092..21939764 | 151..823 | 100 | | Plus |
BS09618.5prime Sequence
875 bp (857 high quality bases) assembled on 2006-04-19
> BS09618.5prime
GAAGTTATCAGTCGACATGTTTAGCAACTTTAAGGAGCGTATTATTTCGG
CCATAGCGCCCGACTTGCCACCTCTGCCGGGCAACAGCGAGCGGGCTATT
GGCTCTGGAAGCGGTCACCATCACAGCTCGACGCACCAGCGACTCCGGTT
CGGCGCTTCCGGCGGACAGCCAATGCCGGACAAGTTCCCCTATGCCCGGC
CGCCCTTTCTGCAGCTTCTCACGCCGGACGAGCTGCGCGCCTCGGCGGAC
CACAATGTGCGGCCCATCATCGTGCCGCGGGACATCAACCTACTGCCCTG
GGGCACCGGATACGCCGAATGCGTCAACTCCGGAAAATCCGAGTGGAACG
AGGACCAGGGTGCCTTCTGCCGGCAAGTTCTTTCGGATCCGGAGCATAAA
CACCCAGATCTCCCGTACACATACTTCGGCATTTTCGACGGACACGCCGG
TTATGGGGCCGCACTGGCCGCCTCGCATCAGTTTCATCACATCCTGCACG
AGAAGCTAGTGGACTGCCTGGAGCTCCTCCTGCCACGGGATGCGGATGCC
ACGAATGGCGGCGGGGAAGGCAACAAGCTGAATCCCACTTTCCCGCACCC
CATTTACTTCCAGCGCCGGGTGACTAAGGACGAACTAATCATCGGGGCGC
TGGAGAGTGCCTTCTTCAACATGGACTCGTTGATAGCGCAGGACTGTGAT
CGTTATCGAGATGCTGGGGGTTGCACCGCCTGCGTTTCATTGTTTATCGA
TGGCAAGATGTATGTGGCCAATGCCGGCGACTCCAGAGCTGTGCTCTGCC
AGCGGCGTGCCACCCCCGAGAGGCCACAAACAAATACTGACTCCGGGATT
GAGCCGGATCCCTTAAAGCTAGCTG
BS09618.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17598-PA | 1956 | CG17598-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17598-RB | 4272 | CG17598-RB | 287..1146 | 17..875 | 4275 | 99.9 | Plus |
| CG17598-RA | 2662 | CG17598-RA | 287..1146 | 17..875 | 4275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22538218..22538722 | 875..372 | 2475 | 99.8 | Minus |
| X | 23542271 | X | 22539741..22540097 | 373..17 | 1785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:14:35 has no hits.
BS09618.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:21 Download gff for
BS09618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-PA | 1..860 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:10 Download gff for
BS09618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-PA | 1..860 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:13:48 Download gff for
BS09618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-RA | 281..1146 | 10..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:15 Download gff for
BS09618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17598-RA | 281..1146 | 10..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:15 Download gff for
BS09618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22538218..22538721 | 373..875 | 99 | <- | Minus |
| X | 22539742..22540103 | 10..372 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:13:48 Download gff for
BS09618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21940054..21940557 | 373..875 | 99 | <- | Minus |
| arm_X | 21941578..21941939 | 10..372 | 99 | | Minus |
BS09618.pep Sequence
Translation from 16 to 1971
> BS09618.pep
MFSNFKERIISAIAPDLPPLPGNSERAIGSGSGHHHSSTHQRLRFGASGG
QPMPDKFPYARPPFLQLLTPDELRASADHNVRPIIVPRDINLLPWGTGYA
ECVNSGKSEWNEDQGAFCRQVLSDPEHKHPDLPYTYFGIFDGHAGYGAAL
AASHQFHHILHEKLVDCLELLLPRDADATNGGGEGNKLNPTFPHPIYFQR
RVTKDELIIGALESAFFNMDSLIAQDCDRYRDAGGCTACVSLFIDGKMYV
ANAGDSRAVLCQRRATPERPQTNTDSGIEPDPLEASCYPVPFSADHTPET
ERERLLNVARLKPHLMGKHYVAMEYAKRPHIKDMGQRILCRQGTMRGWTY
KTLTMEDLCMPVVNGEGKRSRLLGTLGVTRGFGDHELLAINTGIQIKPFL
TPHPDVRQRDLTQVVSIPDEDNRDGDYGVLVMATDGLWDVSENDAVSRTV
FQTLSKYSTEKHRYTMVAQELVARARGKINDSGHWRLADSKAAATVDDIS
VIVIPVCQYYKEHVEWTQNYKRDLEHRRRQAQAHMAQEAVNVLNGVIAEE
AHVVEEEEEGEVVVHEARTSHNQTKVPRRLDGTLDETLVVELTPSLEQVH
IQNADSAEGESSKENVNDKDKEASTTRQQSQQQQQQQQQQQQKGRKGKGK
H*
BS09618.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17598-PB | 651 | CG17598-PB | 1..651 | 1..651 | 3460 | 100 | Plus |
| CG17598-PA | 651 | CG17598-PA | 1..651 | 1..651 | 3460 | 100 | Plus |
