Clone Sequence Records
BS09619.3prime Sequence
872 bp (764 high quality bases) assembled on 2006-04-19
> BS09619.3prime
ATGGTCTAGAAAGCTTTCACATTTTCAGAGGAGCAGCGTCGAGCGACATG
GGCAGCACAGGTTCCGGCTGGTCGATGATCAGCTTCAGATTCTTGTCGGG
CCACTCGAGCTCCAGTCGCTCCTTGGGCTCGCATTTCTCGTCTAGGCCCG
CGCTGCGGAAGTCTTCCATCAGGCGCGGCACCAGTTCATCGGGAATCAGG
ACCTGAATCCAGTAGCCCAGCACGCCGTACGGTTCGTTCACTGTCACCGC
CGAGCCGGTGACGGATTCCGCCACCAAAGTGAGCGCCAGATGCTGAGCCT
TGAAGGTGAAGTGGCGCCCATGTCGGATGCGATCCTTGATGGCCAGTAGG
AGGTACTTGGCCACACCAGGTGCGAGGGTAATCTCAATACCGTCCAGTGA
AATGCAGTTTGGTGCCTGCGCTTGAAAGTCCAGGGGACAGGACTTGTGCA
GCGAATTGCTGCTCATCGACATGGATTGTGGAAAGCTTGGTTCCTCGCGT
TTCATTTGCGTATCCGTCAGCTGCCGATTGTTTTCGTCGTTGGCGCACTT
CTCGCTCAGCGCCTGGAAATCCACCTCCTCCTTCACCTCCTTGGTAGGTT
TCAGCTCACGGAACGTAAAATCTGCATTAACGCCGGCCAGATCGGAACCC
TGCTTCTCCAGATCGTCCTGTAGGTTGAGCAGCGTTTCGGGAAACAGTTC
GAAGACGCTCATCTGGCGATCCATGTTAGTCACCAGCCAATCACCGCCAG
TTTGCATATCCTGGCGAAGGAAGTTGAGCACACCGCGCCCGTTCCAACGC
GATGCCTGCTCAAGTTCGTCGTCAAAGACGCCGACGATCTGGCAGAAGTC
CACCGTGCCCGTGGGAGTGTCG
BS09619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6054-PA | 1407 | Su(fu)-RA | 552..1407 | 872..17 | 4230 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(fu)-RA | 1596 | CG6054-RA | 582..1437 | 872..17 | 4250 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12690032..12690887 | 17..872 | 4250 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:45:01 has no hits.
BS09619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:22 Download gff for
BS09619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6054-PA | 552..1407 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:12 Download gff for
BS09619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6054-PA | 552..1407 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:40 Download gff for
BS09619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(fu)-RA | 826..1688 | 9..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:49 Download gff for
BS09619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(fu)-RA | 582..1444 | 9..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:49 Download gff for
BS09619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12690025..12690887 | 9..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:40 Download gff for
BS09619.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8515747..8516609 | 9..872 | 99 | | Plus |
BS09619.5prime Sequence
942 bp (785 high quality bases) assembled on 2006-04-19
> BS09619.5prime
GAAGTTATCAGTCGACATGGCCGAGGCGAATTTGGACAAAAAACCTGAGG
TGAAGCCTCCGCCGGGCCTTAAGGCCATCATAGACCACCTCGGGCAGGTG
TACCCCAACCAGCCGAACCCGCTGCAGGTGACCACACTGCTCAAGTACTG
GCTGGGCGGTCAGGATCCGTTGGACTACATTAGCATGTACAACTATCCCG
GAGATGTGGATAGGAACGTTCCGCCGCACTGGCACTACATTAGTTTCGGA
CTCAGCGACCTACACGGGGACGAGCGAGTCCACTTGCGCGAGGAGGGCGT
CACTCGGTCTGGCATGGGGTTCGAGTTGACCTTTCGCTTGGCCAAAACAG
AAATAGAGCTAAAGCAGCAGATTGAGAACCCGGAAAAGCCCCAAAGACCG
CCCACCTGGCCGGCGAACCTGTTGCAGGCCATCGGACGCTACTGTTTTCA
AACAGGCAACGGATTGTGCTTCGGAGACAACATCCCGTGGCGCAAGAGTC
TGGATGGCAGTACCACTTCCAAGCTACAGAACCTGCTCGTCGCCCAGGAC
CCGCAGTTGGGCTGCATCGACACTCCCACGGGCACGGTGGACTTCTGCCA
GATCGTCGGCGTCTTTGACGACGAACTTGAGCAGGCATCGCGTTGGAACG
GGCGCGGTGTGCTCAACTTCCTTCGCCAGGATATGCAAACTGGCGGTGAT
TGGCTGGTGACTAACATGGATCGCCAGATGAGCGTCTTCGAACTGTTTCC
CGAAACGCTGCTCAACCTACAGGACGATCTGGAGAAGCAGGGTTCCGATC
TGGCCGGCGTTAATGCAGATTTTACGTTCCGTGAGCTGAACCTACCAAGG
AGGTGAAGGAGGAGGTGGATTTCAGGCGCTGAGCGAGAGTGCGCCAACGA
CGAAAACATCGGCAGCTGACGGATACCCAATGAAACGCGAGG
BS09619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6054-PA | 1407 | Su(fu)-RA | 1..824 | 17..840 | 4020 | 99.5 | Plus |
| CG6054-PA | 1407 | Su(fu)-RA | 824..858 | 839..873 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(fu)-RA | 1596 | CG6054-RA | 31..961 | 17..942 | 4455 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12690508..12691438 | 942..17 | 4330 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:25:40 has no hits.
BS09619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:23 Download gff for
BS09619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6054-PA | 1..931 | 17..942 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:15 Download gff for
BS09619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6054-PA | 1..931 | 17..942 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:47 Download gff for
BS09619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(fu)-RA | 272..1205 | 14..942 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:10 Download gff for
BS09619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(fu)-RA | 28..961 | 14..942 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:10 Download gff for
BS09619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12690508..12691441 | 14..942 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:47 Download gff for
BS09619.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8516230..8517163 | 14..942 | 98 | | Minus |
BS09619.complete Sequence
1439 bp (1439 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636453
> BS09619.complete
GAAGTTATCAGTCGACATGGCCGAGGCGAATTTGGACAAAAAACCTGAGG
TGAAGCCTCCGCCGGGCCTTAAGGCCATCATAGACCACCTCGGGCAGGTG
TACCCCAACCAGCCGAACCCGCTGCAGGTGACCACACTGCTCAAGTACTG
GCTGGGCGGTCAGGATCCGTTGGACTACATTAGCATGTACAACTATCCCG
GAGATGTGGATAGGAACGTTCCGCCGCACTGGCACTACATTAGTTTCGGA
CTCAGCGACCTACACGGGGACGAGCGAGTCCACTTGCGCGAGGAGGGCGT
CACTCGGTCTGGCATGGGGTTCGAGTTGACCTTTCGCTTGGCCAAAACAG
AAATAGAGCTAAAGCAGCAGATTGAGAACCCGGAAAAGCCCCAAAGACCG
CCCACCTGGCCGGCGAACCTGTTGCAGGCCATCGGACGCTACTGTTTTCA
AACAGGCAACGGATTGTGCTTCGGAGACAACATCCCGTGGCGCAAGAGTC
TGGATGGCAGTACCACTTCCAAGCTACAGAACCTGCTCGTCGCCCAGGAC
CCGCAGTTGGGCTGCATCGACACTCCCACGGGCACGGTGGACTTCTGCCA
GATCGTCGGCGTCTTTGACGACGAACTTGAGCAGGCATCGCGTTGGAACG
GGCGCGGTGTGCTCAACTTCCTTCGCCAGGATATGCAAACTGGCGGTGAT
TGGCTGGTGACTAACATGGATCGCCAGATGAGCGTCTTCGAACTGTTTCC
CGAAACGCTGCTCAACCTACAGGACGATCTGGAGAAGCAGGGTTCCGATC
TGGCCGGCGTTAATGCAGATTTTACGTTCCGTGAGCTGAAACCTACCAAG
GAGGTGAAGGAGGAGGTGGATTTCCAGGCGCTGAGCGAGAAGTGCGCCAA
CGACGAAAACAATCGGCAGCTGACGGATACGCAAATGAAACGCGAGGAAC
CAAGCTTTCCACAATCCATGTCGATGAGCAGCAATTCGCTGCACAAGTCC
TGTCCCCTGGACTTTCAAGCGCAGGCACCAAACTGCATTTCACTGGACGG
TATTGAGATTACCCTCGCACCTGGTGTGGCCAAGTACCTCCTACTGGCCA
TCAAGGATCGCATCCGACATGGGCGCCACTTCACCTTCAAGGCTCAGCAT
CTGGCGCTCACTTTGGTGGCGGAATCCGTCACCGGCTCGGCGGTGACAGT
GAACGAACCGTACGGCGTGCTGGGCTACTGGATTCAGGTCCTGATTCCCG
ATGAACTGGTGCCGCGCCTGATGGAAGACTTCCGCAGCGCGGGCCTAGAC
GAGAAATGCGAGCCCAAGGAGCGACTGGAGCTCGAGTGGCCCGACAAGAA
TCTGAAGCTGATCATCGACCAGCCGGAACCTGTGCTGCCCATGTCGCTCG
ACGCTGCTCCTCTGAAAATGTGAAAGCTTTCTAGACCAT
BS09619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(fu)-RA | 1407 | CG6054-PA | 1..1407 | 17..1423 | 6975 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(fu)-RA | 1596 | CG6054-RA | 31..1437 | 17..1423 | 6975 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12690032..12691438 | 1423..17 | 6975 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:13:43 has no hits.
BS09619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:50 Download gff for
BS09619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(fu)-RA | 1..1407 | 17..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:55 Download gff for
BS09619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(fu)-RA | 272..1688 | 14..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:07 Download gff for
BS09619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(fu)-RA | 275..1680 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:50 Download gff for
BS09619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(fu)-RA | 272..1688 | 14..1431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:16 Download gff for
BS09619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(fu)-RA | 31..1436 | 17..1422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:16 Download gff for
BS09619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12690033..12691438 | 17..1422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:07 Download gff for
BS09619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8515755..8517160 | 17..1422 | 99 | | Minus |
BS09619.pep Sequence
Translation from 16 to 1422
> BS09619.pep
MAEANLDKKPEVKPPPGLKAIIDHLGQVYPNQPNPLQVTTLLKYWLGGQD
PLDYISMYNYPGDVDRNVPPHWHYISFGLSDLHGDERVHLREEGVTRSGM
GFELTFRLAKTEIELKQQIENPEKPQRPPTWPANLLQAIGRYCFQTGNGL
CFGDNIPWRKSLDGSTTSKLQNLLVAQDPQLGCIDTPTGTVDFCQIVGVF
DDELEQASRWNGRGVLNFLRQDMQTGGDWLVTNMDRQMSVFELFPETLLN
LQDDLEKQGSDLAGVNADFTFRELKPTKEVKEEVDFQALSEKCANDENNR
QLTDTQMKREEPSFPQSMSMSSNSLHKSCPLDFQAQAPNCISLDGIEITL
APGVAKYLLLAIKDRIRHGRHFTFKAQHLALTLVAESVTGSAVTVNEPYG
VLGYWIQVLIPDELVPRLMEDFRSAGLDEKCEPKERLELEWPDKNLKLII
DQPEPVLPMSLDAAPLKM*
BS09619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(fu)-PA | 468 | CG6054-PA | 1..468 | 1..468 | 2493 | 100 | Plus |
