Clone BS09621 Report

Search the DGRC for BS09621

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG31908-RA
Protein status:BS09621.pep: full length peptide match
Sequenced Size:1211

Clone Sequence Records

BS09621.3prime Sequence

945 bp (795 high quality bases) assembled on 2006-04-19

> BS09621.3prime
ATGGTCTAGATAGCTTTTACCGGCGCATCTGAAAGCCAATGGAGCCATTC
GGACAGGGACCCTTGGGCAGGCGCAGGACTAGGTCGTTGAACGGATGCGG
ATGCTGGCCGAGCTGCTGCGCCTGATGATTCTGATGCTGCTGCTGATGCT
GGTGCTGCTGCTGATGCTGCTGCTGGTGCTGCTGTGGCGACTGCAGCGAC
TGTTGGCGCAGGAGGGCGGCGGACACTGATCCGCCCACAACAGGTGACCA
GCTCTGCTGCGGATTGGGCGACGACTGGGGCGGCGCCTGAGCTTGCATCC
CAACACCGCCCAGTCCCGATCCTCCGCCTCCGTACGGCGGCAACCGTTGA
TTGAAATGCTGCGACGGCTGCTGCTGCTGTTGCTGCTGATGCTGATGCTG
ATGTTGCGGGTTATGCGGATAGTAGTAGTTAAGGCCAGGCTGATTGTGCA
GTCCCGGGAAGTAGCTGTTGTAGTTATTATACATCGGCGTCACTTGGGAC
ATTTTCGGTGCCGAACTCGAGCGGTGCATTCCGCCTCCTGGATGGCTACT
ATTGTTGTTGATGACGTTGTTGTTGCTGATCGCAGAGGGGGGAGTGACAG
GCGGCGCCGCGGACGAAACAGCCACACTGCTGCTATTGACAGCTGGCGTG
ATGGGAGTGGCCGGTTTGTCATCCTCCGGGTTTTTGGCAGCGCCCAGGAT
GCGCAGCCTGGCCTCGGCGTACTCCTGTTCTCGCTGCTTGAGCGTCTTGA
TGGGCTGCTTCGGTCGCATTCCGTTAATGTCCCGCCGCTCCTCCGCCTGG
GCGGGCCGCCGCAGTATCTTGACGGTCTGGTTGCTGGTGGGCGTGCAATA
GGTGGCCGCATCGTAGTCATTGGTCGTCTTGTGCAGCACCATCATGACGG
GCTGCTGCTGTTGCTCCTGCTGGGTAGATGAGTCAACCTCTGCTG

BS09621.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-PA 1179 CG31908-RA 251..1179 945..17 4645 100 Minus
CG31908-PB 1179 CG31908-RB 251..1179 945..17 4645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-RC 2135 CG31908-RC 863..1791 945..17 4645 100 Minus
CG31908-RB 1821 CG31908-RB 549..1477 945..17 4645 100 Minus
CG31908-RA 2033 CG31908-RA 761..1689 945..17 4645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7025173..7025818 17..662 3230 100 Plus
2L 23513712 2L 7026156..7026439 662..945 1420 100 Plus
X 23542271 X 10618460..10618520 138..198 185 86.9 Plus
Blast to na_te.dros performed 2015-02-03 15:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2638..2856 580..346 146 56.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6870..6917 411..367 134 79.2 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 837..911 930..855 125 64.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6929 922..790 123 58.5 Minus

BS09621.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:24 Download gff for BS09621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-PA 251..1179 17..945 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:16 Download gff for BS09621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-PB 251..1179 17..945 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:17:23 Download gff for BS09621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 770..1704 8..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:45:13 Download gff for BS09621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 761..1695 8..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:45:13 Download gff for BS09621.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7025167..7025818 8..662 99 <- Plus
2L 7026157..7026439 663..945 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:17:23 Download gff for BS09621.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7025167..7025818 8..662 99 <- Plus
arm_2L 7026157..7026439 663..945 100   Plus

BS09621.5prime Sequence

908 bp (857 high quality bases) assembled on 2006-04-19

> BS09621.5prime
GAAGTTATCAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGG
AGGAAATCGACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAG
ACGAGCGACCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAG
CGTACAGGAGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTG
GTGGAAACGGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGG
AAGCCCCAAGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCA
ACAGCAGCAGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACG
ATGCGGCCACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTG
CGGCGGCCCGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACC
GAAGCAGCCCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGG
CCAGGCTGCGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCG
GCCACTCCCATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTC
CGCGGCGCCGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCA
TCAACAACAATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCG
GCACCGAAAATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTA
CTTCCCGGGACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATA
ACCCGCAACATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCG
CAGCATTTCAAATCACGGTTGCCGCCGTACGGAGGCGGAGGATCGGGACT
GGGCGGTG

BS09621.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-PA 1179 CG31908-RA 1..845 17..861 4225 100 Plus
CG31908-PB 1179 CG31908-RB 1..845 17..861 4225 100 Plus
CG31908-PA 1179 CG31908-RA 849..892 865..908 220 100 Plus
CG31908-PB 1179 CG31908-RB 849..892 865..908 220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-RC 2135 CG31908-RC 613..1504 17..908 4415 99.8 Plus
CG31908-RB 1821 CG31908-RB 299..1190 17..908 4415 99.8 Plus
CG31908-RA 2033 CG31908-RA 511..1402 17..908 4415 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7026156..7026636 550..70 2405 100 Minus
2L 23513712 2L 7025460..7025818 908..550 1750 99.2 Minus
2L 23513712 2L 7026724..7026777 70..17 270 100 Minus
Blast to na_te.dros performed 2015-02-11 10:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2638..2845 632..855 145 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6870..6917 801..845 134 79.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6929 248..422 125 56.7 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 837..911 282..357 125 64.5 Plus

BS09621.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:25 Download gff for BS09621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:17 Download gff for BS09621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-PB 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:46 Download gff for BS09621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 509..1411 5..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:51 Download gff for BS09621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 500..1402 5..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:51 Download gff for BS09621.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7025460..7025818 550..908 99 <- Minus
2L 7026157..7026635 71..549 100 <- Minus
2L 7026724..7026779 11..70 93 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:46 Download gff for BS09621.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7025460..7025818 550..908 99 <- Minus
arm_2L 7026157..7026635 71..549 100 <- Minus
arm_2L 7026724..7026779 11..70 93 <- Minus

BS09621.complete Sequence

1211 bp assembled on 2008-08-15

GenBank Submission: FJ636454

> BS09621.complete
GAAGTTATCAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGG
AGGAAATCGACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAG
ACGAGCGACCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAG
CGTACAGGAGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTG
GTGGAAACGGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGG
AAGCCCCAAGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCA
ACAGCAGCAGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACG
ATGCGGCCACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTG
CGGCGGCCCGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACC
GAAGCAGCCCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGG
CCAGGCTGCGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCG
GCCACTCCCATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTC
CGCGGCGCCGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCA
TCAACAACAATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCG
GCACCGAAAATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTA
CTTCCCGGGACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATA
ACCCGCAACATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCG
CAGCATTTCAATCAACGGTTGCCGCCGTACGGAGGCGGAGGATCGGGACT
GGGCGGTGTTGGGATGCAAGCTCAGGCGCCGCCCCAGTCGTCGCCCAATC
CGCAGCAGAGCTGGTCACCTGTTGTGGGCGGATCAGTGTCCGCCGCCCTC
CTGCGCCAACAGTCGCTGCAGTCGCCACAGCAGCACCAGCAGCAGCATCA
GCAGCAGCACCAGCATCAGCAGCAGCATCAGAATCATCAGGCGCAGCAGC
TCGGCCAGCATCCGCATCCGTTCAACGACCTAGTCCTGCGCCTGCCCAAG
GGTCCCTGTCCGAATGGCTCCATTGGCTTTCAGATGCGCCGGTAAAAGCT
ATCTAGACCAT

BS09621.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-RC 1179 CG31908-PC 1..1179 17..1195 5895 100 Plus
CG31908-RB 1179 CG31908-PB 1..1179 17..1195 5895 100 Plus
CG31908-RA 1179 CG31908-PA 1..1179 17..1195 5895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-RC 2135 CG31908-RC 613..1791 17..1195 5895 100 Plus
CG31908-RB 1821 CG31908-RB 299..1477 17..1195 5895 100 Plus
CG31908-RA 2033 CG31908-RA 511..1689 17..1195 5895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7025173..7025818 1195..550 3230 100 Minus
2L 23513712 2L 7026156..7026636 550..70 2405 100 Minus
2L 23513712 2L 7026724..7026777 70..17 270 100 Minus
X 23542271 X 10618460..10618520 1074..1014 185 86.9 Minus
Blast to na_te.dros performed 2014-11-27 15:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2638..2856 632..866 146 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6870..6917 801..845 134 79.2 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 837..911 282..357 125 64.5 Plus

BS09621.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:26 Download gff for BS09621.complete
Subject Subject Range Query Range Percent Splice Strand
CG31908-RB 334..1529 5..1204 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:03 Download gff for BS09621.complete
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 520..1696 17..1193 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:28 Download gff for BS09621.complete
Subject Subject Range Query Range Percent Splice Strand
CG31908-RB 345..1521 17..1193 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:56 Download gff for BS09621.complete
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 511..1687 17..1193 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:56 Download gff for BS09621.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7026157..7026635 71..549 100 <- Minus
2L 7026724..7026777 17..70 100   Minus
2L 7025175..7025818 550..1193 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:03 Download gff for BS09621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7025175..7025818 550..1193 100 <- Minus
arm_2L 7026157..7026635 71..549 100 <- Minus
arm_2L 7026724..7026777 17..70 100   Minus

BS09621.pep Sequence

Translation from 16 to 1194

> BS09621.pep
MSHGEDVLDNWEEIDEDGLSMTLQTKLQTSDPPVNKMKLLQRPQSVQESS
QILSSGDGGGGGGNGGGNPPPRQITIARKPQVPPAEVDSSTQQEQQQQPV
MMVLHKTTNDYDAATYCTPTSNQTVKILRRPAQAEERRDINGMRPKQPIK
TLKQREQEYAEARLRILGAAKNPEDDKPATPITPAVNSSSVAVSSAAPPV
TPPSAISNNNVINNNSSHPGGGMHRSSSAPKMSQVTPMYNNYNSYFPGLH
NQPGLNYYYPHNPQHQHQHQQQQQQQPSQHFNQRLPPYGGGGSGLGGVGM
QAQAPPQSSPNPQQSWSPVVGGSVSAALLRQQSLQSPQQHQQQHQQQHQH
QQQHQNHQAQQLGQHPHPFNDLVLRLPKGPCPNGSIGFQMRR*

BS09621.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-PC 392 CG31908-PC 1..392 1..392 2104 100 Plus
CG31908-PB 392 CG31908-PB 1..392 1..392 2104 100 Plus
CG31908-PA 392 CG31908-PA 1..392 1..392 2104 100 Plus
tlk-PG 1489 CG34412-PG 93..356 95..361 162 27.5 Plus
vvl-PC 713 CG10037-PC 439..695 132..382 161 26.4 Plus