Clone Sequence Records
BS09621.3prime Sequence
945 bp (795 high quality bases) assembled on 2006-04-19
> BS09621.3prime
ATGGTCTAGATAGCTTTTACCGGCGCATCTGAAAGCCAATGGAGCCATTC
GGACAGGGACCCTTGGGCAGGCGCAGGACTAGGTCGTTGAACGGATGCGG
ATGCTGGCCGAGCTGCTGCGCCTGATGATTCTGATGCTGCTGCTGATGCT
GGTGCTGCTGCTGATGCTGCTGCTGGTGCTGCTGTGGCGACTGCAGCGAC
TGTTGGCGCAGGAGGGCGGCGGACACTGATCCGCCCACAACAGGTGACCA
GCTCTGCTGCGGATTGGGCGACGACTGGGGCGGCGCCTGAGCTTGCATCC
CAACACCGCCCAGTCCCGATCCTCCGCCTCCGTACGGCGGCAACCGTTGA
TTGAAATGCTGCGACGGCTGCTGCTGCTGTTGCTGCTGATGCTGATGCTG
ATGTTGCGGGTTATGCGGATAGTAGTAGTTAAGGCCAGGCTGATTGTGCA
GTCCCGGGAAGTAGCTGTTGTAGTTATTATACATCGGCGTCACTTGGGAC
ATTTTCGGTGCCGAACTCGAGCGGTGCATTCCGCCTCCTGGATGGCTACT
ATTGTTGTTGATGACGTTGTTGTTGCTGATCGCAGAGGGGGGAGTGACAG
GCGGCGCCGCGGACGAAACAGCCACACTGCTGCTATTGACAGCTGGCGTG
ATGGGAGTGGCCGGTTTGTCATCCTCCGGGTTTTTGGCAGCGCCCAGGAT
GCGCAGCCTGGCCTCGGCGTACTCCTGTTCTCGCTGCTTGAGCGTCTTGA
TGGGCTGCTTCGGTCGCATTCCGTTAATGTCCCGCCGCTCCTCCGCCTGG
GCGGGCCGCCGCAGTATCTTGACGGTCTGGTTGCTGGTGGGCGTGCAATA
GGTGGCCGCATCGTAGTCATTGGTCGTCTTGTGCAGCACCATCATGACGG
GCTGCTGCTGTTGCTCCTGCTGGGTAGATGAGTCAACCTCTGCTG
BS09621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-PA | 1179 | CG31908-RA | 251..1179 | 945..17 | 4645 | 100 | Minus |
CG31908-PB | 1179 | CG31908-RB | 251..1179 | 945..17 | 4645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-RC | 2135 | CG31908-RC | 863..1791 | 945..17 | 4645 | 100 | Minus |
CG31908-RB | 1821 | CG31908-RB | 549..1477 | 945..17 | 4645 | 100 | Minus |
CG31908-RA | 2033 | CG31908-RA | 761..1689 | 945..17 | 4645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7025173..7025818 | 17..662 | 3230 | 100 | Plus |
2L | 23513712 | 2L | 7026156..7026439 | 662..945 | 1420 | 100 | Plus |
X | 23542271 | X | 10618460..10618520 | 138..198 | 185 | 86.9 | Plus |
Blast to na_te.dros performed 2015-02-03 15:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2856 | 580..346 | 146 | 56.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 411..367 | 134 | 79.2 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..911 | 930..855 | 125 | 64.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6929 | 922..790 | 123 | 58.5 | Minus |
BS09621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:24 Download gff for
BS09621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-PA | 251..1179 | 17..945 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:16 Download gff for
BS09621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-PB | 251..1179 | 17..945 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:17:23 Download gff for
BS09621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 770..1704 | 8..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:45:13 Download gff for
BS09621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 761..1695 | 8..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:45:13 Download gff for
BS09621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7025167..7025818 | 8..662 | 99 | <- | Plus |
2L | 7026157..7026439 | 663..945 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:17:23 Download gff for
BS09621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7025167..7025818 | 8..662 | 99 | <- | Plus |
arm_2L | 7026157..7026439 | 663..945 | 100 | | Plus |
BS09621.5prime Sequence
908 bp (857 high quality bases) assembled on 2006-04-19
> BS09621.5prime
GAAGTTATCAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGG
AGGAAATCGACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAG
ACGAGCGACCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAG
CGTACAGGAGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTG
GTGGAAACGGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGG
AAGCCCCAAGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCA
ACAGCAGCAGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACG
ATGCGGCCACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTG
CGGCGGCCCGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACC
GAAGCAGCCCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGG
CCAGGCTGCGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCG
GCCACTCCCATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTC
CGCGGCGCCGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCA
TCAACAACAATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCG
GCACCGAAAATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTA
CTTCCCGGGACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATA
ACCCGCAACATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCG
CAGCATTTCAAATCACGGTTGCCGCCGTACGGAGGCGGAGGATCGGGACT
GGGCGGTG
BS09621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-PA | 1179 | CG31908-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
CG31908-PB | 1179 | CG31908-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
CG31908-PA | 1179 | CG31908-RA | 849..892 | 865..908 | 220 | 100 | Plus |
CG31908-PB | 1179 | CG31908-RB | 849..892 | 865..908 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-RC | 2135 | CG31908-RC | 613..1504 | 17..908 | 4415 | 99.8 | Plus |
CG31908-RB | 1821 | CG31908-RB | 299..1190 | 17..908 | 4415 | 99.8 | Plus |
CG31908-RA | 2033 | CG31908-RA | 511..1402 | 17..908 | 4415 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7026156..7026636 | 550..70 | 2405 | 100 | Minus |
2L | 23513712 | 2L | 7025460..7025818 | 908..550 | 1750 | 99.2 | Minus |
2L | 23513712 | 2L | 7026724..7026777 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2845 | 632..855 | 145 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 801..845 | 134 | 79.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6929 | 248..422 | 125 | 56.7 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..911 | 282..357 | 125 | 64.5 | Plus |
BS09621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:25 Download gff for
BS09621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:17 Download gff for
BS09621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-PB | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:46 Download gff for
BS09621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 509..1411 | 5..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:51 Download gff for
BS09621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 500..1402 | 5..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:51 Download gff for
BS09621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7025460..7025818 | 550..908 | 99 | <- | Minus |
2L | 7026157..7026635 | 71..549 | 100 | <- | Minus |
2L | 7026724..7026779 | 11..70 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:46 Download gff for
BS09621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7025460..7025818 | 550..908 | 99 | <- | Minus |
arm_2L | 7026157..7026635 | 71..549 | 100 | <- | Minus |
arm_2L | 7026724..7026779 | 11..70 | 93 | <- | Minus |
BS09621.complete Sequence
1211 bp assembled on 2008-08-15
GenBank Submission: FJ636454
> BS09621.complete
GAAGTTATCAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGG
AGGAAATCGACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAG
ACGAGCGACCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAG
CGTACAGGAGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTG
GTGGAAACGGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGG
AAGCCCCAAGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCA
ACAGCAGCAGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACG
ATGCGGCCACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTG
CGGCGGCCCGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACC
GAAGCAGCCCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGG
CCAGGCTGCGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCG
GCCACTCCCATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTC
CGCGGCGCCGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCA
TCAACAACAATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCG
GCACCGAAAATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTA
CTTCCCGGGACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATA
ACCCGCAACATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCG
CAGCATTTCAATCAACGGTTGCCGCCGTACGGAGGCGGAGGATCGGGACT
GGGCGGTGTTGGGATGCAAGCTCAGGCGCCGCCCCAGTCGTCGCCCAATC
CGCAGCAGAGCTGGTCACCTGTTGTGGGCGGATCAGTGTCCGCCGCCCTC
CTGCGCCAACAGTCGCTGCAGTCGCCACAGCAGCACCAGCAGCAGCATCA
GCAGCAGCACCAGCATCAGCAGCAGCATCAGAATCATCAGGCGCAGCAGC
TCGGCCAGCATCCGCATCCGTTCAACGACCTAGTCCTGCGCCTGCCCAAG
GGTCCCTGTCCGAATGGCTCCATTGGCTTTCAGATGCGCCGGTAAAAGCT
ATCTAGACCAT
BS09621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-RC | 1179 | CG31908-PC | 1..1179 | 17..1195 | 5895 | 100 | Plus |
CG31908-RB | 1179 | CG31908-PB | 1..1179 | 17..1195 | 5895 | 100 | Plus |
CG31908-RA | 1179 | CG31908-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-RC | 2135 | CG31908-RC | 613..1791 | 17..1195 | 5895 | 100 | Plus |
CG31908-RB | 1821 | CG31908-RB | 299..1477 | 17..1195 | 5895 | 100 | Plus |
CG31908-RA | 2033 | CG31908-RA | 511..1689 | 17..1195 | 5895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7025173..7025818 | 1195..550 | 3230 | 100 | Minus |
2L | 23513712 | 2L | 7026156..7026636 | 550..70 | 2405 | 100 | Minus |
2L | 23513712 | 2L | 7026724..7026777 | 70..17 | 270 | 100 | Minus |
X | 23542271 | X | 10618460..10618520 | 1074..1014 | 185 | 86.9 | Minus |
Blast to na_te.dros performed 2014-11-27 15:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2856 | 632..866 | 146 | 56.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 801..845 | 134 | 79.2 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..911 | 282..357 | 125 | 64.5 | Plus |
BS09621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:26 Download gff for
BS09621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RB | 334..1529 | 5..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:03 Download gff for
BS09621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 520..1696 | 17..1193 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:28 Download gff for
BS09621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RB | 345..1521 | 17..1193 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:56 Download gff for
BS09621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 511..1687 | 17..1193 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:56 Download gff for
BS09621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7026157..7026635 | 71..549 | 100 | <- | Minus |
2L | 7026724..7026777 | 17..70 | 100 | | Minus |
2L | 7025175..7025818 | 550..1193 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:03 Download gff for
BS09621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7025175..7025818 | 550..1193 | 100 | <- | Minus |
arm_2L | 7026157..7026635 | 71..549 | 100 | <- | Minus |
arm_2L | 7026724..7026777 | 17..70 | 100 | | Minus |
BS09621.pep Sequence
Translation from 16 to 1194
> BS09621.pep
MSHGEDVLDNWEEIDEDGLSMTLQTKLQTSDPPVNKMKLLQRPQSVQESS
QILSSGDGGGGGGNGGGNPPPRQITIARKPQVPPAEVDSSTQQEQQQQPV
MMVLHKTTNDYDAATYCTPTSNQTVKILRRPAQAEERRDINGMRPKQPIK
TLKQREQEYAEARLRILGAAKNPEDDKPATPITPAVNSSSVAVSSAAPPV
TPPSAISNNNVINNNSSHPGGGMHRSSSAPKMSQVTPMYNNYNSYFPGLH
NQPGLNYYYPHNPQHQHQHQQQQQQQPSQHFNQRLPPYGGGGSGLGGVGM
QAQAPPQSSPNPQQSWSPVVGGSVSAALLRQQSLQSPQQHQQQHQQQHQH
QQQHQNHQAQQLGQHPHPFNDLVLRLPKGPCPNGSIGFQMRR*
BS09621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-PC | 392 | CG31908-PC | 1..392 | 1..392 | 2104 | 100 | Plus |
CG31908-PB | 392 | CG31908-PB | 1..392 | 1..392 | 2104 | 100 | Plus |
CG31908-PA | 392 | CG31908-PA | 1..392 | 1..392 | 2104 | 100 | Plus |
tlk-PG | 1489 | CG34412-PG | 93..356 | 95..361 | 162 | 27.5 | Plus |
vvl-PC | 713 | CG10037-PC | 439..695 | 132..382 | 161 | 26.4 | Plus |