Clone BS09622 Report

Search the DGRC for BS09622

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG7920-RA
Protein status:BS09622.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09622.3prime Sequence

866 bp (842 high quality bases) assembled on 2006-04-19

> BS09622.3prime
ATGGTCTAGAAAGCTTTTAGTTCGGCGAGGGCATAACCTTGATGCGCTCG
AAGGCTTGTTTCTCCAGGGTCTCGCGGTGCTTGGGATCGGCGATCTGGAT
AAGTTCGTACATCCTCTGTCGCACGTTCTTGCCGAACAGCGAAGCGATTC
CATGCTCCGTGACGACGTAGTGGACGTGGGCACGCGAAGTGACGACGCCA
GCGCCTTCCTTCAGCGTGGGAACAATCTTGCTCTCGCCCTTGTTGGTGGT
CGATGGCATGGCAATAATTGGCACACCCAGTCCATCGAGACCCTCCGCCG
CTCCGCGAATGAAGTCCACCTGTCCGCCGAAGCCGGAGTAGAAGCGGGGA
CCAATCGAGTCTGAGCACACCTGTCCAGTCAGATCCACCTCGATGCAGCT
GTTGATGGCCGTCATTCGAGGCTGCTGTTTCACAATGCTGGTGTTGTTCA
CATAGTCGATGGCGTACATCTCGATGAAGGGATTGTTGTCCACGAAGTCG
TACAGAGCCTTGTCACCGATGAGGAAGGAGCCCACAATTCTGCCCTGGTG
CATCTTCTTCTTGCTGTTGGTGACGCATCCCTTGCGCACGAGCTCAACGA
CACCGTTGGCGAACATCTCGGAGTGGATGCCCAGATCCTTGTGGTTGTGC
AGGGCGGCGAGTACGGCGTCTGGGATGCTGCCAATGCCCATCTGCAGGGT
GGCGCCGTCCTTGACGAGGTTCTCGGCAATGAGCTTGCCGATCTTCTTCT
CCACTTCGGAAATCTTACCAGTTCCGTGCTGAGGCAGATCATCGGTCACC
TCGATGGCGAGGTCGAAGTGAGACTTGTGAATGATGGCATCGCCGAAAGT
GCGCGGCATCTTGGGA

BS09622.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-PA 1434 CG7920-RA 585..1434 866..17 4075 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-RC 1791 CG7920-RC 755..1604 866..17 4145 99.2 Minus
CG7920-RA 1910 CG7920-RA 874..1723 866..17 4145 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30010663..30011118 17..472 2220 99.1 Plus
3R 32079331 3R 30011203..30011597 472..866 1930 99.2 Plus
Blast to na_te.dros performed 2015-02-06 16:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4550..4627 359..282 111 60.3 Minus

BS09622.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:26 Download gff for BS09622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-PA 586..1434 17..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:19 Download gff for BS09622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-PA 586..1434 17..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:21:21 Download gff for BS09622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 875..1725 13..865 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:09:48 Download gff for BS09622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 875..1725 13..865 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:09:48 Download gff for BS09622.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30010657..30011117 13..471 98 <- Plus
3R 30011203..30011596 472..865 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:21:21 Download gff for BS09622.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25836379..25836839 13..471 98 <- Plus
arm_3R 25836925..25837318 472..865 99   Plus

BS09622.5prime Sequence

909 bp (837 high quality bases) assembled on 2006-04-19

> BS09622.5prime
GAAGTTATCAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGC
TGAACAGCCTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCAC
AACAACTACTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGA
GCCTCCAATCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTG
ACACGGTTTTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAAC
GCGATGGCCAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTG
CCACATGCACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGG
ACCATTTCCGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCT
GTTGCCGACGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCC
GAATCTTTTCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACG
TGTCGCCGCCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGAT
TGTGTGCGCGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAA
TCCCAAGATGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACT
TCGACCTCGCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGT
AAGATTTCCGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCT
CGTCAAGGACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACG
CCGTACTCGCCGCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAG
ATGTTCGCCAACGGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTCACCAA
CAGCAAGAA

BS09622.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-PA 1434 CG7920-RA 1..893 17..909 4415 99.7 Plus
CG7920-PB 315 CG7920-RB 1..185 17..201 925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-RC 1791 CG7920-RC 170..1063 16..909 4440 99.8 Plus
CG7920-RA 1910 CG7920-RA 289..1182 16..909 4440 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30011669..30012062 590..197 1955 99.7 Minus
3R 32079331 3R 30011289..30011608 909..590 1585 99.7 Minus
3R 32079331 3R 30014811..30014996 201..16 930 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:58:31 has no hits.

BS09622.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:27 Download gff for BS09622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:20 Download gff for BS09622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:57:12 Download gff for BS09622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 281..1182 9..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:57 Download gff for BS09622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 281..1182 9..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:57 Download gff for BS09622.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30011289..30011607 591..909 99 <- Minus
3R 30014815..30015004 9..197 98   Minus
3R 30011669..30012061 198..590 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:57:12 Download gff for BS09622.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25837011..25837329 591..909 99 <- Minus
arm_3R 25837391..25837783 198..590 99 <- Minus
arm_3R 25840537..25840726 9..197 98   Minus

BS09622.complete Sequence

1466 bp (1466 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636455

> BS09622.complete
GAAGTTATCAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGC
TGAACAGCCTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCAC
AACAACTACTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGA
GCCTCCAATCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTG
ACACGGTTTTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAAC
GCGATGGCCAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTG
CCACATGCACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGG
ACCATTTCCGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCT
GTTGCCGACGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCC
GAATCTTTTCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACG
TGTCGCCGCCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGAT
TGTGTGCGCGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAA
TCCCAAGATGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACT
TCGACCTCGCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGT
AAGATTTCCGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCT
CGTCAAGGACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACG
CCGTACTCGCCGCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAG
ATGTTCGCCAACGGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTCACCAA
CAGCAAGAAGAAGATGCACCAGGGCAGAATTGTGGGCTCCTTCCTCATCG
GTGACAAGGCTCTGTACGACTTCGTGGACAACAATCCCTTCATCGAGATG
TACGCCATCGACTATGTGAACAACACCAGCATTGTGAAACAGCAGCCTCG
AATGACGGCCATCAACAGCTGCATCGAGGTGGATCTGACTGGACAGGTGT
GCTCAGACTCGATTGGTCCCCGCTTCTACTCCGGCTTCGGCGGACAGGTG
GACTTCATTCGCGGAGCGGCGGAGGGTCTCGATGGACTGGGTGTGCCAAT
TATTGCCATGCCATCGACCACCAACAAGGGCGAGAGCAAGATTGTTCCCA
CGCTGAAGGAAGGCGCTGGCGTCGTCACTTCGCGTGCCCACGTCCACTAC
GTCGTCACGGAGCATGGAATCGCTTCGCTGTTCGGCAAGAACGTGCGACA
GAGGATGTACGAACTTATCCAGATCGCCGATCCCAAGCACCGCGAGACCC
TGGAGAAACAAGCCTTCGAGCGCATCAAGGTTATGCCCTCGCCGAACTAA
AAGCTTTCTAGACCAT

BS09622.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-RC 1434 CG7920-PC 1..1434 17..1450 7065 99.5 Plus
CG7920-RA 1434 CG7920-PA 1..1434 17..1450 7065 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-RC 1791 CG7920-RC 170..1604 16..1450 7070 99.5 Plus
CG7920-RA 1910 CG7920-RA 289..1723 16..1450 7070 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30010663..30011118 1450..995 2220 99.1 Minus
3R 32079331 3R 30011203..30011608 995..590 2000 99.5 Minus
3R 32079331 3R 30011669..30012062 590..197 1955 99.7 Minus
3R 32079331 3R 30014811..30014996 201..16 930 100 Minus
Blast to na_te.dros performed 2014-11-27 13:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4550..4627 1108..1185 111 60.3 Plus

BS09622.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:51 Download gff for BS09622.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 1..1434 17..1450 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:57 Download gff for BS09622.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 361..1805 9..1454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:00 Download gff for BS09622.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 290..1721 17..1448 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:51 Download gff for BS09622.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 361..1805 9..1454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:10 Download gff for BS09622.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 290..1721 17..1448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:10 Download gff for BS09622.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30011669..30012061 198..590 99 <- Minus
3R 30014815..30014995 17..197 100   Minus
3R 30010665..30011117 996..1448 99 <- Minus
3R 30011203..30011607 591..995 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:00 Download gff for BS09622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25837391..25837783 198..590 99 <- Minus
arm_3R 25836387..25836839 996..1448 99 <- Minus
arm_3R 25836925..25837329 591..995 99 <- Minus
arm_3R 25840537..25840717 17..197 100   Minus

BS09622.pep Sequence

Translation from 16 to 1449

> BS09622.pep
MSKQLARHVGQLNSLLKTAATASSVSAHNNYFTYVRELSHPIAREPPIVK
PEEAVACVKSGDTVFAGGAAATPVALLNAMAKHGKSNNLECVTVCHMHTE
GPGEYAKPEYKDHFRSNSFFMGANVRKAVADGRGDNVPIFLHEIPNLFYK
QIVKPDVSFIHVSPPDNHGYCSLGTSVDCVRAALLNSKLIVAQINPKMPR
TFGDAIIHKSHFDLAIEVTDDLPQHGTGKISEVEKKIGKLIAENLVKDGA
TLQMGIGSIPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKM
HQGRIVGSFLIGDKALYDFVDNNPFIEMYAIDYVNNTSIVKQQPRMTAIN
SCIEVDLTGQVCSDSIGPRFYSGFGGQVDFIRGAAEGLDGLGVPIIAMPS
TTNKGESKIVPTLKEGAGVVTSRAHVHYVVTEHGIASLFGKNVRQRMYEL
IQIADPKHRETLEKQAFERIKVMPSPN*

BS09622.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-PC 477 CG7920-PC 1..477 1..477 2480 100 Plus
CG7920-PA 477 CG7920-PA 1..477 1..477 2480 100 Plus