Clone Sequence Records
BS09622.3prime Sequence
866 bp (842 high quality bases) assembled on 2006-04-19
> BS09622.3prime
ATGGTCTAGAAAGCTTTTAGTTCGGCGAGGGCATAACCTTGATGCGCTCG
AAGGCTTGTTTCTCCAGGGTCTCGCGGTGCTTGGGATCGGCGATCTGGAT
AAGTTCGTACATCCTCTGTCGCACGTTCTTGCCGAACAGCGAAGCGATTC
CATGCTCCGTGACGACGTAGTGGACGTGGGCACGCGAAGTGACGACGCCA
GCGCCTTCCTTCAGCGTGGGAACAATCTTGCTCTCGCCCTTGTTGGTGGT
CGATGGCATGGCAATAATTGGCACACCCAGTCCATCGAGACCCTCCGCCG
CTCCGCGAATGAAGTCCACCTGTCCGCCGAAGCCGGAGTAGAAGCGGGGA
CCAATCGAGTCTGAGCACACCTGTCCAGTCAGATCCACCTCGATGCAGCT
GTTGATGGCCGTCATTCGAGGCTGCTGTTTCACAATGCTGGTGTTGTTCA
CATAGTCGATGGCGTACATCTCGATGAAGGGATTGTTGTCCACGAAGTCG
TACAGAGCCTTGTCACCGATGAGGAAGGAGCCCACAATTCTGCCCTGGTG
CATCTTCTTCTTGCTGTTGGTGACGCATCCCTTGCGCACGAGCTCAACGA
CACCGTTGGCGAACATCTCGGAGTGGATGCCCAGATCCTTGTGGTTGTGC
AGGGCGGCGAGTACGGCGTCTGGGATGCTGCCAATGCCCATCTGCAGGGT
GGCGCCGTCCTTGACGAGGTTCTCGGCAATGAGCTTGCCGATCTTCTTCT
CCACTTCGGAAATCTTACCAGTTCCGTGCTGAGGCAGATCATCGGTCACC
TCGATGGCGAGGTCGAAGTGAGACTTGTGAATGATGGCATCGCCGAAAGT
GCGCGGCATCTTGGGA
BS09622.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7920-PA | 1434 | CG7920-RA | 585..1434 | 866..17 | 4075 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7920-RC | 1791 | CG7920-RC | 755..1604 | 866..17 | 4145 | 99.2 | Minus |
CG7920-RA | 1910 | CG7920-RA | 874..1723 | 866..17 | 4145 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30010663..30011118 | 17..472 | 2220 | 99.1 | Plus |
3R | 32079331 | 3R | 30011203..30011597 | 472..866 | 1930 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-06 16:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4550..4627 | 359..282 | 111 | 60.3 | Minus |
BS09622.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:26 Download gff for
BS09622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-PA | 586..1434 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:19 Download gff for
BS09622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-PA | 586..1434 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:21:21 Download gff for
BS09622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-RA | 875..1725 | 13..865 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:09:48 Download gff for
BS09622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-RA | 875..1725 | 13..865 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:09:48 Download gff for
BS09622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30010657..30011117 | 13..471 | 98 | <- | Plus |
3R | 30011203..30011596 | 472..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:21:21 Download gff for
BS09622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25836379..25836839 | 13..471 | 98 | <- | Plus |
arm_3R | 25836925..25837318 | 472..865 | 99 | | Plus |
BS09622.5prime Sequence
909 bp (837 high quality bases) assembled on 2006-04-19
> BS09622.5prime
GAAGTTATCAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGC
TGAACAGCCTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCAC
AACAACTACTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGA
GCCTCCAATCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTG
ACACGGTTTTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAAC
GCGATGGCCAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTG
CCACATGCACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGG
ACCATTTCCGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCT
GTTGCCGACGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCC
GAATCTTTTCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACG
TGTCGCCGCCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGAT
TGTGTGCGCGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAA
TCCCAAGATGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACT
TCGACCTCGCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGT
AAGATTTCCGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCT
CGTCAAGGACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACG
CCGTACTCGCCGCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAG
ATGTTCGCCAACGGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTCACCAA
CAGCAAGAA
BS09622.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7920-PA | 1434 | CG7920-RA | 1..893 | 17..909 | 4415 | 99.7 | Plus |
CG7920-PB | 315 | CG7920-RB | 1..185 | 17..201 | 925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7920-RC | 1791 | CG7920-RC | 170..1063 | 16..909 | 4440 | 99.8 | Plus |
CG7920-RA | 1910 | CG7920-RA | 289..1182 | 16..909 | 4440 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30011669..30012062 | 590..197 | 1955 | 99.7 | Minus |
3R | 32079331 | 3R | 30011289..30011608 | 909..590 | 1585 | 99.7 | Minus |
3R | 32079331 | 3R | 30014811..30014996 | 201..16 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:58:31 has no hits.
BS09622.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:27 Download gff for
BS09622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:20 Download gff for
BS09622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:57:12 Download gff for
BS09622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-RA | 281..1182 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:57 Download gff for
BS09622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-RA | 281..1182 | 9..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:57 Download gff for
BS09622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30011289..30011607 | 591..909 | 99 | <- | Minus |
3R | 30014815..30015004 | 9..197 | 98 | | Minus |
3R | 30011669..30012061 | 198..590 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:57:12 Download gff for
BS09622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25837011..25837329 | 591..909 | 99 | <- | Minus |
arm_3R | 25837391..25837783 | 198..590 | 99 | <- | Minus |
arm_3R | 25840537..25840726 | 9..197 | 98 | | Minus |
BS09622.complete Sequence
1466 bp (1466 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636455
> BS09622.complete
GAAGTTATCAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGC
TGAACAGCCTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCAC
AACAACTACTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGA
GCCTCCAATCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTG
ACACGGTTTTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAAC
GCGATGGCCAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTG
CCACATGCACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGG
ACCATTTCCGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCT
GTTGCCGACGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCC
GAATCTTTTCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACG
TGTCGCCGCCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGAT
TGTGTGCGCGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAA
TCCCAAGATGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACT
TCGACCTCGCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGT
AAGATTTCCGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCT
CGTCAAGGACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACG
CCGTACTCGCCGCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAG
ATGTTCGCCAACGGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTCACCAA
CAGCAAGAAGAAGATGCACCAGGGCAGAATTGTGGGCTCCTTCCTCATCG
GTGACAAGGCTCTGTACGACTTCGTGGACAACAATCCCTTCATCGAGATG
TACGCCATCGACTATGTGAACAACACCAGCATTGTGAAACAGCAGCCTCG
AATGACGGCCATCAACAGCTGCATCGAGGTGGATCTGACTGGACAGGTGT
GCTCAGACTCGATTGGTCCCCGCTTCTACTCCGGCTTCGGCGGACAGGTG
GACTTCATTCGCGGAGCGGCGGAGGGTCTCGATGGACTGGGTGTGCCAAT
TATTGCCATGCCATCGACCACCAACAAGGGCGAGAGCAAGATTGTTCCCA
CGCTGAAGGAAGGCGCTGGCGTCGTCACTTCGCGTGCCCACGTCCACTAC
GTCGTCACGGAGCATGGAATCGCTTCGCTGTTCGGCAAGAACGTGCGACA
GAGGATGTACGAACTTATCCAGATCGCCGATCCCAAGCACCGCGAGACCC
TGGAGAAACAAGCCTTCGAGCGCATCAAGGTTATGCCCTCGCCGAACTAA
AAGCTTTCTAGACCAT
BS09622.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7920-RC | 1434 | CG7920-PC | 1..1434 | 17..1450 | 7065 | 99.5 | Plus |
CG7920-RA | 1434 | CG7920-PA | 1..1434 | 17..1450 | 7065 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7920-RC | 1791 | CG7920-RC | 170..1604 | 16..1450 | 7070 | 99.5 | Plus |
CG7920-RA | 1910 | CG7920-RA | 289..1723 | 16..1450 | 7070 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30010663..30011118 | 1450..995 | 2220 | 99.1 | Minus |
3R | 32079331 | 3R | 30011203..30011608 | 995..590 | 2000 | 99.5 | Minus |
3R | 32079331 | 3R | 30011669..30012062 | 590..197 | 1955 | 99.7 | Minus |
3R | 32079331 | 3R | 30014811..30014996 | 201..16 | 930 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4550..4627 | 1108..1185 | 111 | 60.3 | Plus |
BS09622.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:51 Download gff for
BS09622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-RA | 1..1434 | 17..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:57 Download gff for
BS09622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-RA | 361..1805 | 9..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:00 Download gff for
BS09622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-RA | 290..1721 | 17..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:51 Download gff for
BS09622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-RA | 361..1805 | 9..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:10 Download gff for
BS09622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7920-RA | 290..1721 | 17..1448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:10 Download gff for
BS09622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30011669..30012061 | 198..590 | 99 | <- | Minus |
3R | 30014815..30014995 | 17..197 | 100 | | Minus |
3R | 30010665..30011117 | 996..1448 | 99 | <- | Minus |
3R | 30011203..30011607 | 591..995 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:00 Download gff for
BS09622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25837391..25837783 | 198..590 | 99 | <- | Minus |
arm_3R | 25836387..25836839 | 996..1448 | 99 | <- | Minus |
arm_3R | 25836925..25837329 | 591..995 | 99 | <- | Minus |
arm_3R | 25840537..25840717 | 17..197 | 100 | | Minus |
BS09622.pep Sequence
Translation from 16 to 1449
> BS09622.pep
MSKQLARHVGQLNSLLKTAATASSVSAHNNYFTYVRELSHPIAREPPIVK
PEEAVACVKSGDTVFAGGAAATPVALLNAMAKHGKSNNLECVTVCHMHTE
GPGEYAKPEYKDHFRSNSFFMGANVRKAVADGRGDNVPIFLHEIPNLFYK
QIVKPDVSFIHVSPPDNHGYCSLGTSVDCVRAALLNSKLIVAQINPKMPR
TFGDAIIHKSHFDLAIEVTDDLPQHGTGKISEVEKKIGKLIAENLVKDGA
TLQMGIGSIPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKM
HQGRIVGSFLIGDKALYDFVDNNPFIEMYAIDYVNNTSIVKQQPRMTAIN
SCIEVDLTGQVCSDSIGPRFYSGFGGQVDFIRGAAEGLDGLGVPIIAMPS
TTNKGESKIVPTLKEGAGVVTSRAHVHYVVTEHGIASLFGKNVRQRMYEL
IQIADPKHRETLEKQAFERIKVMPSPN*
BS09622.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7920-PC | 477 | CG7920-PC | 1..477 | 1..477 | 2480 | 100 | Plus |
CG7920-PA | 477 | CG7920-PA | 1..477 | 1..477 | 2480 | 100 | Plus |