Clone BS09625 Report

Search the DGRC for BS09625

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptade5-RA
Protein status:BS09625.pep: full length peptide match
Sequenced Size:1322

Clone Sequence Records

BS09625.3prime Sequence

852 bp (764 high quality bases) assembled on 2006-04-19

> BS09625.3prime
ATGGTCTTGAAAGCTTCTAAGCATTTCGCACGCCGCGCAACTCCTTGTCG
GCCTTCTTGAGAGTGATAAAGTTGTTGAGCGCCTTGACACGCAATTTCGA
CCAGACCATGAAGTTGCCCAGCCCCAGAATGGTGGCCGCATGCAGAGCAG
CTGCCTCTGGATAGAGAACTGTGGCACAGCCCAGCCCCGATGGCAGATTC
AAGCTGGACCACACGTCCACCTGCATGTTGTCCGATTTGACGGGCGGACA
ATTGATTACCGGATAGTTGGTGCTGCCGGAAACGACTGGACCCAGTCCAT
TGGATCGCCCGGCGACGGCCACAAAGATCAAGTTGCTCATCACCGATTCA
TATTCGCGGACAATGCGCAACGTTTCCTCCGGTCCCTTGTGGGCCGAACT
CACGCGAAGTTCCACATTAAGGCCGAGGGATCGACAGCTGGTGGCTATCT
TCTCGCTGTGCGATATATCGGAAGCACTGCCCATCAGAATGACAACCAGG
TGATCCTTCTTGGGCACAATATCAGCCAGTTGTTCGGCCACCCAAATGAA
GTTCCTCTTTACGGTATCCAAATCGCTGGCCGTCACCGATGCCAGATTGC
GATACACCTGCTTGTCGACCATCAAACGCTTGTCACCCGCTGGCCACAAG
CGCCACGAATCGGAATCAATGATATCGGCCAGAACTATGTTGCCATCGTC
GCAGATACCGAACTCCACTTTCATGTCGATCAGGGCGCAATTCTTGGTCT
GCCATGCCCTCTCGAGAATCTCGAAGACCAGCAGTGTGGTTCTACGCATA
ATGTCCACCTCATCTTGGCCGATCACCAGGCCATTTAGCTCGAACTTGGC
GG

BS09625.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3989-PA 1290 ade5-RA 455..1290 852..17 4180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-RB 2547 CG3989-RB 696..1531 852..17 4180 100 Minus
ade5-RA 1826 CG3989-RA 699..1534 852..17 4180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12758052..12758855 17..820 4020 100 Plus
2L 23513712 2L 12454199..12454367 780..612 275 77.5 Minus
Blast to na_te.dros performed on 2015-02-10 18:29:44 has no hits.

BS09625.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:32 Download gff for BS09625.3prime
Subject Subject Range Query Range Percent Splice Strand
ade5-PA 455..1290 17..852 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:27 Download gff for BS09625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3989-PA 455..1290 17..852 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:12:02 Download gff for BS09625.3prime
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 699..1539 12..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:31 Download gff for BS09625.3prime
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 699..1539 12..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:31 Download gff for BS09625.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12758047..12758854 12..819 99 <- Plus
X 12758923..12758955 820..852 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:12:02 Download gff for BS09625.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12652080..12652887 12..819 99 <- Plus
arm_X 12652956..12652988 820..852 100   Plus

BS09625.5prime Sequence

850 bp (811 high quality bases) assembled on 2006-04-19

> BS09625.5prime
GAAGTTATCAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCT
ATAAGCTCGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGAT
CTGCCAGAGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCAC
CGCCGGCGATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCT
CCAATACCACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATT
CGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAA
GTGCCAGATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTT
CGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCG
CCCAAACAGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTG
GAGCGAGGAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGA
TCGGCCAAGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTC
GAGATTCTCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACAT
GAAAGTGGAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATA
TCATTGATTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTG
ATGGTCGACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGA
TTTGGATACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTG
ATATTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCT

BS09625.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3989-PA 1290 ade5-RA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-RA 1826 CG3989-RA 241..1078 13..850 4175 99.9 Plus
ade5-RB 2547 CG3989-RB 241..1075 13..850 4120 99.5 Plus
CG40801-RB 429 CG40801-RB 58..403 44..393 1530 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12758508..12758855 850..503 1740 100 Minus
X 23542271 X 12759711..12759915 246..42 1025 100 Minus
Y 3667352 Y 3059275..3059477 246..44 925 97 Minus
Y 3667352 Y 3231313..3231515 44..246 925 97 Plus
Y 3667352 Y 3267332..3267534 246..44 910 96.6 Minus
U 3151297 U 2460018..2460220 44..246 910 96.6 Plus
X 23542271 X 12759460..12759610 393..243 755 100 Minus
Y 3667352 Y 3267089..3267236 393..242 620 95.4 Minus
X 23542271 X 12758922..12759038 504..388 585 100 Minus
Y 3667352 Y 3059062..3059204 393..247 580 94.6 Minus
Y 3667352 Y 3091728..3091870 186..44 565 93 Minus
Y 3667352 Y 3205824..3205966 44..186 565 93 Plus
Y 3667352 Y 3231586..3231711 247..376 510 94.6 Plus
Blast to na_te.dros performed 2015-02-11 10:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 1485..1524 312..273 110 75 Minus

BS09625.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:33 Download gff for BS09625.5prime
Subject Subject Range Query Range Percent Splice Strand
ade5-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:28 Download gff for BS09625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3989-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:44 Download gff for BS09625.5prime
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 236..1078 7..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:32 Download gff for BS09625.5prime
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 236..1078 7..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:32 Download gff for BS09625.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12758508..12758854 504..850 100 <- Minus
X 12758923..12759035 391..503 100 <- Minus
X 12759463..12759607 246..390 100 <- Minus
X 12759712..12759915 42..245 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:44 Download gff for BS09625.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12652541..12652887 504..850 100 <- Minus
arm_X 12652956..12653068 391..503 100 <- Minus
arm_X 12653496..12653640 246..390 100 <- Minus
arm_X 12653745..12653948 42..245 100 <- Minus

BS09625.complete Sequence

1322 bp assembled on 2008-08-15

GenBank Submission: FJ638827

> BS09625.complete
GAAGTTATCAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCT
ATAAGCTCGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGAT
CTGCCAGAGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCAC
CGCCGGCGATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCT
CCAATACCACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATT
CGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAA
GTGCCAGATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTT
CGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCG
CCCAAACAGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTG
GAGCGAGGAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGA
TCGGCCAAGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTC
GAGATTCTCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACAT
GAAAGTGGAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATA
TCATTGATTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTG
ATGGTCGACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGA
TTTGGATACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTG
ATATTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCT
TCCGATATATCGCACAGCGAGAAGATAGCCACCAGCTGTCGATCCCTCGG
CCTTAATGTGGAACTTCGCGTGAGTTCGGCCCACAAGGGACCGGAGGAAA
CGTTGCGCATTGTCCGCGAATATGAATCGGTGATGAGCAACTTGATCTTT
GTGGCCGTCGCCGGGCGATCCAATGGACTGGGTCCAGTCGTTTCCGGCAG
CACCAACTATCCGGTAATCAATTGTCCGCCCGTCAAATCGGACAACATGC
AGGTGGACGTGTGGTCCAGCTTGAATCTGCCATCGGGGCTGGGCTGTGCC
ACAGTTCTCTATCCAGAGGCAGCTGCTCTGCATGCGGCCACCATTCTGGG
GCTGGGCAACTTCATGGTCTGGTCGAAATTGCGTGTCAAGGCGCTCAACA
ACTTTATCACTCTCAAGAAGGCCGACAAGGAGTTGCGCGGCGTGCGAAAT
GCTTAGAAGCTTTCAAGACCAT

BS09625.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-RA 1290 CG3989-PA 1..1290 17..1306 6450 100 Plus
ade5-RB 1287 CG3989-PB 1..1287 17..1306 6370 99.8 Plus
CG40801-RB 429 CG40801-PB 58..403 44..393 1505 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-RA 1826 CG3989-RA 241..1534 13..1306 6455 99.9 Plus
ade5-RB 2547 CG3989-RB 241..1531 13..1306 6375 99.7 Plus
CG40801-RB 429 CG40801-RB 58..403 44..393 1505 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12758052..12758855 1306..503 4020 100 Minus
X 23542271 X 12759711..12759915 246..42 1025 100 Minus
Y 3667352 Y 3059275..3059477 246..44 925 97 Minus
Y 3667352 Y 3231313..3231515 44..246 925 97 Plus
Y 3667352 Y 3267332..3267534 246..44 910 96.6 Minus
U 3151297 U 2460018..2460220 44..246 910 96.6 Plus
X 23542271 X 12759460..12759610 393..243 755 100 Minus
2L 23513712 2L 12453715..12454367 59..711 700 73.8 Plus
Ymm 880023 Ymm 562058..562204 44..190 645 95.9 Plus
Y 3667352 Y 3267089..3267236 393..242 620 95.4 Minus
U 3151297 U 2460316..2460463 242..393 620 95.4 Plus
X 23542271 X 12758922..12759038 504..388 585 100 Minus
Y 3667352 Y 3059062..3059204 393..247 580 94.6 Minus
Y 3667352 Y 3091728..3091870 186..44 565 93 Minus
Y 3667352 Y 3205824..3205966 44..186 565 93 Plus
Ymm 880023 Ymm 631403..631545 186..44 565 93 Minus
Y 3667352 Y 3231586..3231711 247..376 510 94.6 Plus
Blast to na_te.dros performed on 2014-11-27 10:42:59 has no hits.

BS09625.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:42 Download gff for BS09625.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 237..1540 7..1311 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:27 Download gff for BS09625.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 245..1534 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:51 Download gff for BS09625.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 246..1535 17..1306 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:01 Download gff for BS09625.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 245..1534 17..1306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:01 Download gff for BS09625.complete
Subject Subject Range Query Range Percent Splice Strand
X 12758052..12758854 504..1306 100 <- Minus
X 12758923..12759035 391..503 100 <- Minus
X 12759463..12759607 246..390 100 <- Minus
X 12759712..12759915 42..245 100 <- Minus
X 12760349..12760373 17..41 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:27 Download gff for BS09625.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12652085..12652887 504..1306 100 <- Minus
arm_X 12652956..12653068 391..503 100 <- Minus
arm_X 12653496..12653640 246..390 100 <- Minus
arm_X 12653745..12653948 42..245 100 <- Minus
arm_X 12654382..12654406 17..41 100   Minus

BS09625.pep Sequence

Translation from 16 to 1305

> BS09625.pep
MSTTTTASIEGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGV
KAHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIP
IEWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQI
VSAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFG
ICDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVK
RNFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVEL
RVSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPV
INCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFM
VWSKLRVKALNNFITLKKADKELRGVRNA*

BS09625.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-PA 429 CG3989-PA 1..429 1..429 2207 100 Plus
ade5-PB 428 CG3989-PB 1..428 1..429 2187 99.5 Plus
CG40801-PB 142 CG40801-PB 19..122 9..112 524 97.1 Plus