Clone Sequence Records
BS09625.3prime Sequence
852 bp (764 high quality bases) assembled on 2006-04-19
> BS09625.3prime
ATGGTCTTGAAAGCTTCTAAGCATTTCGCACGCCGCGCAACTCCTTGTCG
GCCTTCTTGAGAGTGATAAAGTTGTTGAGCGCCTTGACACGCAATTTCGA
CCAGACCATGAAGTTGCCCAGCCCCAGAATGGTGGCCGCATGCAGAGCAG
CTGCCTCTGGATAGAGAACTGTGGCACAGCCCAGCCCCGATGGCAGATTC
AAGCTGGACCACACGTCCACCTGCATGTTGTCCGATTTGACGGGCGGACA
ATTGATTACCGGATAGTTGGTGCTGCCGGAAACGACTGGACCCAGTCCAT
TGGATCGCCCGGCGACGGCCACAAAGATCAAGTTGCTCATCACCGATTCA
TATTCGCGGACAATGCGCAACGTTTCCTCCGGTCCCTTGTGGGCCGAACT
CACGCGAAGTTCCACATTAAGGCCGAGGGATCGACAGCTGGTGGCTATCT
TCTCGCTGTGCGATATATCGGAAGCACTGCCCATCAGAATGACAACCAGG
TGATCCTTCTTGGGCACAATATCAGCCAGTTGTTCGGCCACCCAAATGAA
GTTCCTCTTTACGGTATCCAAATCGCTGGCCGTCACCGATGCCAGATTGC
GATACACCTGCTTGTCGACCATCAAACGCTTGTCACCCGCTGGCCACAAG
CGCCACGAATCGGAATCAATGATATCGGCCAGAACTATGTTGCCATCGTC
GCAGATACCGAACTCCACTTTCATGTCGATCAGGGCGCAATTCTTGGTCT
GCCATGCCCTCTCGAGAATCTCGAAGACCAGCAGTGTGGTTCTACGCATA
ATGTCCACCTCATCTTGGCCGATCACCAGGCCATTTAGCTCGAACTTGGC
GG
BS09625.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3989-PA | 1290 | ade5-RA | 455..1290 | 852..17 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-RB | 2547 | CG3989-RB | 696..1531 | 852..17 | 4180 | 100 | Minus |
ade5-RA | 1826 | CG3989-RA | 699..1534 | 852..17 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12758052..12758855 | 17..820 | 4020 | 100 | Plus |
2L | 23513712 | 2L | 12454199..12454367 | 780..612 | 275 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:29:44 has no hits.
BS09625.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:32 Download gff for
BS09625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-PA | 455..1290 | 17..852 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:27 Download gff for
BS09625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3989-PA | 455..1290 | 17..852 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:12:02 Download gff for
BS09625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 699..1539 | 12..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:31 Download gff for
BS09625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 699..1539 | 12..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:31 Download gff for
BS09625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12758047..12758854 | 12..819 | 99 | <- | Plus |
X | 12758923..12758955 | 820..852 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:12:02 Download gff for
BS09625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12652080..12652887 | 12..819 | 99 | <- | Plus |
arm_X | 12652956..12652988 | 820..852 | 100 | | Plus |
BS09625.5prime Sequence
850 bp (811 high quality bases) assembled on 2006-04-19
> BS09625.5prime
GAAGTTATCAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCT
ATAAGCTCGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGAT
CTGCCAGAGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCAC
CGCCGGCGATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCT
CCAATACCACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATT
CGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAA
GTGCCAGATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTT
CGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCG
CCCAAACAGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTG
GAGCGAGGAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGA
TCGGCCAAGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTC
GAGATTCTCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACAT
GAAAGTGGAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATA
TCATTGATTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTG
ATGGTCGACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGA
TTTGGATACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTG
ATATTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCT
BS09625.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3989-PA | 1290 | ade5-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-RA | 1826 | CG3989-RA | 241..1078 | 13..850 | 4175 | 99.9 | Plus |
ade5-RB | 2547 | CG3989-RB | 241..1075 | 13..850 | 4120 | 99.5 | Plus |
CG40801-RB | 429 | CG40801-RB | 58..403 | 44..393 | 1530 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12758508..12758855 | 850..503 | 1740 | 100 | Minus |
X | 23542271 | X | 12759711..12759915 | 246..42 | 1025 | 100 | Minus |
Y | 3667352 | Y | 3059275..3059477 | 246..44 | 925 | 97 | Minus |
Y | 3667352 | Y | 3231313..3231515 | 44..246 | 925 | 97 | Plus |
Y | 3667352 | Y | 3267332..3267534 | 246..44 | 910 | 96.6 | Minus |
U | 3151297 | U | 2460018..2460220 | 44..246 | 910 | 96.6 | Plus |
X | 23542271 | X | 12759460..12759610 | 393..243 | 755 | 100 | Minus |
Y | 3667352 | Y | 3267089..3267236 | 393..242 | 620 | 95.4 | Minus |
X | 23542271 | X | 12758922..12759038 | 504..388 | 585 | 100 | Minus |
Y | 3667352 | Y | 3059062..3059204 | 393..247 | 580 | 94.6 | Minus |
Y | 3667352 | Y | 3091728..3091870 | 186..44 | 565 | 93 | Minus |
Y | 3667352 | Y | 3205824..3205966 | 44..186 | 565 | 93 | Plus |
Y | 3667352 | Y | 3231586..3231711 | 247..376 | 510 | 94.6 | Plus |
Blast to na_te.dros performed 2015-02-11 10:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 1485..1524 | 312..273 | 110 | 75 | Minus |
BS09625.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:33 Download gff for
BS09625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:28 Download gff for
BS09625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3989-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:44 Download gff for
BS09625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 236..1078 | 7..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:32 Download gff for
BS09625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 236..1078 | 7..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:32 Download gff for
BS09625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12758508..12758854 | 504..850 | 100 | <- | Minus |
X | 12758923..12759035 | 391..503 | 100 | <- | Minus |
X | 12759463..12759607 | 246..390 | 100 | <- | Minus |
X | 12759712..12759915 | 42..245 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:44 Download gff for
BS09625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12652541..12652887 | 504..850 | 100 | <- | Minus |
arm_X | 12652956..12653068 | 391..503 | 100 | <- | Minus |
arm_X | 12653496..12653640 | 246..390 | 100 | <- | Minus |
arm_X | 12653745..12653948 | 42..245 | 100 | <- | Minus |
BS09625.complete Sequence
1322 bp assembled on 2008-08-15
GenBank Submission: FJ638827
> BS09625.complete
GAAGTTATCAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCT
ATAAGCTCGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGAT
CTGCCAGAGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCAC
CGCCGGCGATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCT
CCAATACCACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATT
CGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAA
GTGCCAGATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTT
CGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCG
CCCAAACAGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTG
GAGCGAGGAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGA
TCGGCCAAGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTC
GAGATTCTCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACAT
GAAAGTGGAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATA
TCATTGATTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTG
ATGGTCGACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGA
TTTGGATACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTG
ATATTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCT
TCCGATATATCGCACAGCGAGAAGATAGCCACCAGCTGTCGATCCCTCGG
CCTTAATGTGGAACTTCGCGTGAGTTCGGCCCACAAGGGACCGGAGGAAA
CGTTGCGCATTGTCCGCGAATATGAATCGGTGATGAGCAACTTGATCTTT
GTGGCCGTCGCCGGGCGATCCAATGGACTGGGTCCAGTCGTTTCCGGCAG
CACCAACTATCCGGTAATCAATTGTCCGCCCGTCAAATCGGACAACATGC
AGGTGGACGTGTGGTCCAGCTTGAATCTGCCATCGGGGCTGGGCTGTGCC
ACAGTTCTCTATCCAGAGGCAGCTGCTCTGCATGCGGCCACCATTCTGGG
GCTGGGCAACTTCATGGTCTGGTCGAAATTGCGTGTCAAGGCGCTCAACA
ACTTTATCACTCTCAAGAAGGCCGACAAGGAGTTGCGCGGCGTGCGAAAT
GCTTAGAAGCTTTCAAGACCAT
BS09625.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-RA | 1290 | CG3989-PA | 1..1290 | 17..1306 | 6450 | 100 | Plus |
ade5-RB | 1287 | CG3989-PB | 1..1287 | 17..1306 | 6370 | 99.8 | Plus |
CG40801-RB | 429 | CG40801-PB | 58..403 | 44..393 | 1505 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-RA | 1826 | CG3989-RA | 241..1534 | 13..1306 | 6455 | 99.9 | Plus |
ade5-RB | 2547 | CG3989-RB | 241..1531 | 13..1306 | 6375 | 99.7 | Plus |
CG40801-RB | 429 | CG40801-RB | 58..403 | 44..393 | 1505 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12758052..12758855 | 1306..503 | 4020 | 100 | Minus |
X | 23542271 | X | 12759711..12759915 | 246..42 | 1025 | 100 | Minus |
Y | 3667352 | Y | 3059275..3059477 | 246..44 | 925 | 97 | Minus |
Y | 3667352 | Y | 3231313..3231515 | 44..246 | 925 | 97 | Plus |
Y | 3667352 | Y | 3267332..3267534 | 246..44 | 910 | 96.6 | Minus |
U | 3151297 | U | 2460018..2460220 | 44..246 | 910 | 96.6 | Plus |
X | 23542271 | X | 12759460..12759610 | 393..243 | 755 | 100 | Minus |
2L | 23513712 | 2L | 12453715..12454367 | 59..711 | 700 | 73.8 | Plus |
Ymm | 880023 | Ymm | 562058..562204 | 44..190 | 645 | 95.9 | Plus |
Y | 3667352 | Y | 3267089..3267236 | 393..242 | 620 | 95.4 | Minus |
U | 3151297 | U | 2460316..2460463 | 242..393 | 620 | 95.4 | Plus |
X | 23542271 | X | 12758922..12759038 | 504..388 | 585 | 100 | Minus |
Y | 3667352 | Y | 3059062..3059204 | 393..247 | 580 | 94.6 | Minus |
Y | 3667352 | Y | 3091728..3091870 | 186..44 | 565 | 93 | Minus |
Y | 3667352 | Y | 3205824..3205966 | 44..186 | 565 | 93 | Plus |
Ymm | 880023 | Ymm | 631403..631545 | 186..44 | 565 | 93 | Minus |
Y | 3667352 | Y | 3231586..3231711 | 247..376 | 510 | 94.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:42:59 has no hits.
BS09625.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:42 Download gff for
BS09625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 237..1540 | 7..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:27 Download gff for
BS09625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 245..1534 | 17..1306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:51 Download gff for
BS09625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 246..1535 | 17..1306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:01 Download gff for
BS09625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 245..1534 | 17..1306 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:01 Download gff for
BS09625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12758052..12758854 | 504..1306 | 100 | <- | Minus |
X | 12758923..12759035 | 391..503 | 100 | <- | Minus |
X | 12759463..12759607 | 246..390 | 100 | <- | Minus |
X | 12759712..12759915 | 42..245 | 100 | <- | Minus |
X | 12760349..12760373 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:27 Download gff for
BS09625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12652085..12652887 | 504..1306 | 100 | <- | Minus |
arm_X | 12652956..12653068 | 391..503 | 100 | <- | Minus |
arm_X | 12653496..12653640 | 246..390 | 100 | <- | Minus |
arm_X | 12653745..12653948 | 42..245 | 100 | <- | Minus |
arm_X | 12654382..12654406 | 17..41 | 100 | | Minus |
BS09625.pep Sequence
Translation from 16 to 1305
> BS09625.pep
MSTTTTASIEGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGV
KAHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIP
IEWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQI
VSAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFG
ICDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVK
RNFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVEL
RVSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPV
INCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFM
VWSKLRVKALNNFITLKKADKELRGVRNA*
BS09625.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-PA | 429 | CG3989-PA | 1..429 | 1..429 | 2207 | 100 | Plus |
ade5-PB | 428 | CG3989-PB | 1..428 | 1..429 | 2187 | 99.5 | Plus |
CG40801-PB | 142 | CG40801-PB | 19..122 | 9..112 | 524 | 97.1 | Plus |