Clone Sequence Records
BS09628.3prime Sequence
968 bp (751 high quality bases) assembled on 2006-04-19
> BS09628.3prime
ATGGTCTAGAAAGCTTTTAGACAGCCTCGAGGAGAAGGGCGATGCCCTGA
CCACCACCAATGCACGCGGATCCAATGCCGTACTTTAGCTTCTTGCGCTG
CAACTCATGAACCAGATGACCAGTGATGCGAGAGCCACTGGCACCCAGAG
GATGGCCCAAGGCGATGGCGCCTCCGTTCACATTCAGTTTGGAGGTATCC
AACTTCAGGGCATCGGCGCAAGCCAATGTCTGGGCAGCAAAGGCTTCGTT
GATCTCAATCAGATCAATATCCTCCAGTTTCTTGCCGGAAACCTTCAGGA
CGTTCTGAATGGCGGGTACTGGGCCAATGCCCATGATCTCAGGCTTGACT
CCGACAAAGGAGAAGGCCACTAGACGGGCCAGAGGCTTCAGGTTGTACTC
CTTAAGCGCCTCCTCGGAGGCCACGATCACTGCGGAGGCACCATCACAGA
TTCCGGATGCTGTTCCGGCAGTCACAACGCCGTTCTTCTTAAACAGCGAA
GGCAGCTTGTTCAGACCCTCGATGGTGGTCTTGGGACGTGGGTGCTCGTC
CACCACAAAGTCCACTTCCTTTCCCTTGACCTTAAGTTTGATGGGTGTGA
TCTCGGCATTGAATGCTCCCTCCTTCTGACCCTTCTCCCAGTTCTTTTGC
GAGAGCAGAGAGAACTCATCCACACGCTCCCTACTGATCTTGTACTGATC
GGCCAGGTTCTCAGCGGTCAGAGCCATGGGCAGCTTGCAGTAGGTATCGG
TGAGGCCAGCCCATAGAGCATCCTCCAGATTGTAGCTGGCACCCAAGGTG
GTTCCGAATCTCACATTACGGGCAATGAAAGGGCTCTGTGACATGTTCTC
CACGCCGCCGGTAAGGGCTATCTTGGCACCGCCGACCAGGATGTCCTGGG
CTCCGTTTACGATCGACTGGAAGCCGGAACCGCAAAACCGGTTGAATCCC
AGGGCCGGCTTCTCGATG
BS09628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4600-PA | 1197 | yip2-RA | 246..1197 | 968..17 | 4660 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-RA | 1391 | CG4600-RA | 341..1292 | 968..17 | 4700 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9916111..9916981 | 968..98 | 4295 | 99.5 | Minus |
2L | 23513712 | 2L | 9917040..9917121 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 15:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1665..1710 | 757..712 | 113 | 71.7 | Minus |
BS09628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:36 Download gff for
BS09628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-PA | 246..1197 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:33 Download gff for
BS09628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4600-PA | 246..1197 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:02 Download gff for
BS09628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 341..1296 | 12..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:05 Download gff for
BS09628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 341..1296 | 12..968 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:05 Download gff for
BS09628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9917040..9917125 | 12..98 | 96 | | Minus |
2L | 9916111..9916980 | 99..968 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:02 Download gff for
BS09628.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9916111..9916980 | 99..968 | 99 | -> | Minus |
arm_2L | 9917040..9917125 | 12..98 | 96 | | Minus |
BS09628.5prime Sequence
876 bp (823 high quality bases) assembled on 2006-04-19
> BS09628.5prime
GAAGTTATCAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGG
CTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATC
AACCAGACCCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGC
CGGTCTTAAGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCG
CGTCCTCCTCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAAC
TGCGGTGTGCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGG
TTCCGGCTTCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCG
GTGCCAAGATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCT
TTCATTGCCCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAA
TCTGGAGGATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGC
CCATGGCTCTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGG
GAGCGTGTGGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGG
TCAGAAGGAGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGG
TCAAGGGAAAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAG
ACCACCATCGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGAACGG
CGTTGTGACTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAG
TGATCGTGGCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAAGCTCTG
GCCCGTCTAGTGGCCTTCTCCTTTGT
BS09628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4600-PA | 1197 | yip2-RA | 1..860 | 17..876 | 4250 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-RA | 1391 | CG4600-RA | 96..955 | 17..876 | 4270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9916051..9916725 | 202..876 | 3345 | 99.7 | Plus |
2L | 23513712 | 2L | 9915621..9915791 | 32..202 | 855 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1665..1710 | 473..518 | 113 | 71.7 | Plus |
BS09628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:37 Download gff for
BS09628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:34 Download gff for
BS09628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4600-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:57:20 Download gff for
BS09628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..955 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:11 Download gff for
BS09628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..955 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:11 Download gff for
BS09628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9915348..9915366 | 17..35 | 100 | -> | Plus |
2L | 9915625..9915791 | 36..202 | 100 | -> | Plus |
2L | 9916052..9916725 | 203..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:57:20 Download gff for
BS09628.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9915348..9915366 | 17..35 | 100 | -> | Plus |
arm_2L | 9915625..9915791 | 36..202 | 100 | -> | Plus |
arm_2L | 9916052..9916725 | 203..876 | 99 | | Plus |
BS09628.complete Sequence
1229 bp (1229 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636456
> BS09628.complete
GAAGTTATCAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGG
CTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATC
AACCAGACCCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGC
CGGTCTTAAGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCG
CGTCCTCCTCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAAC
TGCGGTGTGCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGG
TTCCGGCTTCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCG
GTGCCAAGATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCT
TTCATTGCCCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAA
TCTGGAGGATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGC
CCATGGCTCTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGG
GAGCGTGTGGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGG
TCAGAAGGAGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGG
TCAAGGGAAAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAG
ACCACCATCGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGAACGG
CGTTGTGACTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAG
TGATCGTGGCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAGCCTCTG
GCCCGTCTAGTGGCCTTCTCCTTTGTCGGAGTCAAGCCTGAGATCATGGG
CATTGGCCCAGTACCCGCCATTCAGAACGTCCTGAAGGTTTCCGGCAAGA
AACTGGAGGATATTGATCTGATTGAGATCAACGAAGCCTTTGCTGCCCAG
ACATTGGCTTGCGCCGATGCCCTGAAGTTGGATACCTCCAAACTGAATGT
GAACGGAGGCGCCATCGCCTTGGGCCATCCTCTGGGTGCCAGTGGCTCTC
GCATCACTGGTCATCTGGTTCATGAGTTGCAGCGCAAGAAGCTAAAGTAC
GGCATTGGATCCGCGTGCATTGGTGGTGGTCAGGGCATCGCCCTTCTCCT
CGAGGCTGTCTAAAAGCTTTCTAGACCAT
BS09628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-RA | 1197 | CG4600-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-RA | 1391 | CG4600-RA | 96..1292 | 17..1213 | 5985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9916051..9916981 | 202..1132 | 4655 | 100 | Plus |
2L | 23513712 | 2L | 9915621..9915791 | 32..202 | 855 | 100 | Plus |
2L | 23513712 | 2L | 9917040..9917121 | 1132..1213 | 410 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1665..1710 | 473..518 | 113 | 71.7 | Plus |
BS09628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:39 Download gff for
BS09628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 1..1197 | 17..1213 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:40 Download gff for
BS09628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 94..1294 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:25 Download gff for
BS09628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..1290 | 17..1211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:39 Download gff for
BS09628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 94..1294 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:57 Download gff for
BS09628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..1290 | 17..1211 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:57 Download gff for
BS09628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9915348..9915366 | 17..35 | 100 | -> | Plus |
2L | 9915625..9915791 | 36..202 | 100 | -> | Plus |
2L | 9916052..9916980 | 203..1131 | 100 | -> | Plus |
2L | 9917040..9917119 | 1132..1211 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:25 Download gff for
BS09628.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9915348..9915366 | 17..35 | 100 | -> | Plus |
arm_2L | 9915625..9915791 | 36..202 | 100 | -> | Plus |
arm_2L | 9916052..9916980 | 203..1131 | 100 | -> | Plus |
arm_2L | 9917040..9917119 | 1132..1211 | 100 | | Plus |
BS09628.pep Sequence
Translation from 16 to 1212
> BS09628.pep
MSAATKGIYIVAAKRTAFGTFGGSLKGINQTQLQTTAAKAALDAAGLKGE
QVDTVIVGNVIASSSTDGIYVPRHVGLNCGVPIEKPALGINRLCGSGFQS
IVNGAQDILVGGAKIALTGGVENMSQSPFIARNVRFGTTLGASYNLEDAL
WAGLTDTYCKLPMALTAENLADQYKISRERVDEFSLLSQKNWEKGQKEGA
FNAEITPIKLKVKGKEVDFVVDEHPRPKTTIEGLNKLPSLFKKNGVVTAG
TASGICDGASAVIVASEEALKEYNLKPLARLVAFSFVGVKPEIMGIGPVP
AIQNVLKVSGKKLEDIDLIEINEAFAAQTLACADALKLDTSKLNVNGGAI
ALGHPLGASGSRITGHLVHELQRKKLKYGIGSACIGGGQGIALLLEAV*
BS09628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-PA | 398 | CG4600-PA | 1..398 | 1..398 | 2005 | 100 | Plus |
CG9149-PA | 392 | CG9149-PA | 4..389 | 8..396 | 820 | 43.4 | Plus |
CG10932-PB | 410 | CG10932-PB | 25..408 | 8..396 | 613 | 35.5 | Plus |
CG10932-PA | 410 | CG10932-PA | 25..408 | 8..396 | 613 | 35.5 | Plus |
Thiolase-PA | 469 | CG4581-PA | 41..461 | 5..396 | 400 | 32.1 | Plus |