Clone BS09628 Report

Search the DGRC for BS09628

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptyip2-RA
Protein status:BS09628.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09628.3prime Sequence

968 bp (751 high quality bases) assembled on 2006-04-19

> BS09628.3prime
ATGGTCTAGAAAGCTTTTAGACAGCCTCGAGGAGAAGGGCGATGCCCTGA
CCACCACCAATGCACGCGGATCCAATGCCGTACTTTAGCTTCTTGCGCTG
CAACTCATGAACCAGATGACCAGTGATGCGAGAGCCACTGGCACCCAGAG
GATGGCCCAAGGCGATGGCGCCTCCGTTCACATTCAGTTTGGAGGTATCC
AACTTCAGGGCATCGGCGCAAGCCAATGTCTGGGCAGCAAAGGCTTCGTT
GATCTCAATCAGATCAATATCCTCCAGTTTCTTGCCGGAAACCTTCAGGA
CGTTCTGAATGGCGGGTACTGGGCCAATGCCCATGATCTCAGGCTTGACT
CCGACAAAGGAGAAGGCCACTAGACGGGCCAGAGGCTTCAGGTTGTACTC
CTTAAGCGCCTCCTCGGAGGCCACGATCACTGCGGAGGCACCATCACAGA
TTCCGGATGCTGTTCCGGCAGTCACAACGCCGTTCTTCTTAAACAGCGAA
GGCAGCTTGTTCAGACCCTCGATGGTGGTCTTGGGACGTGGGTGCTCGTC
CACCACAAAGTCCACTTCCTTTCCCTTGACCTTAAGTTTGATGGGTGTGA
TCTCGGCATTGAATGCTCCCTCCTTCTGACCCTTCTCCCAGTTCTTTTGC
GAGAGCAGAGAGAACTCATCCACACGCTCCCTACTGATCTTGTACTGATC
GGCCAGGTTCTCAGCGGTCAGAGCCATGGGCAGCTTGCAGTAGGTATCGG
TGAGGCCAGCCCATAGAGCATCCTCCAGATTGTAGCTGGCACCCAAGGTG
GTTCCGAATCTCACATTACGGGCAATGAAAGGGCTCTGTGACATGTTCTC
CACGCCGCCGGTAAGGGCTATCTTGGCACCGCCGACCAGGATGTCCTGGG
CTCCGTTTACGATCGACTGGAAGCCGGAACCGCAAAACCGGTTGAATCCC
AGGGCCGGCTTCTCGATG

BS09628.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4600-PA 1197 yip2-RA 246..1197 968..17 4660 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-RA 1391 CG4600-RA 341..1292 968..17 4700 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9916111..9916981 968..98 4295 99.5 Minus
2L 23513712 2L 9917040..9917121 98..17 410 100 Minus
Blast to na_te.dros performed 2015-01-31 15:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 1665..1710 757..712 113 71.7 Minus

BS09628.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:36 Download gff for BS09628.3prime
Subject Subject Range Query Range Percent Splice Strand
yip2-PA 246..1197 17..968 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:33 Download gff for BS09628.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4600-PA 246..1197 17..968 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:02 Download gff for BS09628.3prime
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 341..1296 12..968 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:05 Download gff for BS09628.3prime
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 341..1296 12..968 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:05 Download gff for BS09628.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9917040..9917125 12..98 96   Minus
2L 9916111..9916980 99..968 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:02 Download gff for BS09628.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9916111..9916980 99..968 99 -> Minus
arm_2L 9917040..9917125 12..98 96   Minus

BS09628.5prime Sequence

876 bp (823 high quality bases) assembled on 2006-04-19

> BS09628.5prime
GAAGTTATCAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGG
CTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATC
AACCAGACCCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGC
CGGTCTTAAGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCG
CGTCCTCCTCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAAC
TGCGGTGTGCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGG
TTCCGGCTTCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCG
GTGCCAAGATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCT
TTCATTGCCCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAA
TCTGGAGGATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGC
CCATGGCTCTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGG
GAGCGTGTGGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGG
TCAGAAGGAGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGG
TCAAGGGAAAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAG
ACCACCATCGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGAACGG
CGTTGTGACTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAG
TGATCGTGGCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAAGCTCTG
GCCCGTCTAGTGGCCTTCTCCTTTGT

BS09628.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4600-PA 1197 yip2-RA 1..860 17..876 4250 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-RA 1391 CG4600-RA 96..955 17..876 4270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9916051..9916725 202..876 3345 99.7 Plus
2L 23513712 2L 9915621..9915791 32..202 855 100 Plus
Blast to na_te.dros performed 2015-02-13 00:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 1665..1710 473..518 113 71.7 Plus

BS09628.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:37 Download gff for BS09628.5prime
Subject Subject Range Query Range Percent Splice Strand
yip2-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:34 Download gff for BS09628.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4600-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:57:20 Download gff for BS09628.5prime
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 96..955 17..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:11 Download gff for BS09628.5prime
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 96..955 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:11 Download gff for BS09628.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9915348..9915366 17..35 100 -> Plus
2L 9915625..9915791 36..202 100 -> Plus
2L 9916052..9916725 203..876 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:57:20 Download gff for BS09628.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9915348..9915366 17..35 100 -> Plus
arm_2L 9915625..9915791 36..202 100 -> Plus
arm_2L 9916052..9916725 203..876 99   Plus

BS09628.complete Sequence

1229 bp (1229 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636456

> BS09628.complete
GAAGTTATCAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGG
CTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATC
AACCAGACCCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGC
CGGTCTTAAGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCG
CGTCCTCCTCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAAC
TGCGGTGTGCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGG
TTCCGGCTTCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCG
GTGCCAAGATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCT
TTCATTGCCCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAA
TCTGGAGGATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGC
CCATGGCTCTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGG
GAGCGTGTGGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGG
TCAGAAGGAGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGG
TCAAGGGAAAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAG
ACCACCATCGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGAACGG
CGTTGTGACTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAG
TGATCGTGGCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAGCCTCTG
GCCCGTCTAGTGGCCTTCTCCTTTGTCGGAGTCAAGCCTGAGATCATGGG
CATTGGCCCAGTACCCGCCATTCAGAACGTCCTGAAGGTTTCCGGCAAGA
AACTGGAGGATATTGATCTGATTGAGATCAACGAAGCCTTTGCTGCCCAG
ACATTGGCTTGCGCCGATGCCCTGAAGTTGGATACCTCCAAACTGAATGT
GAACGGAGGCGCCATCGCCTTGGGCCATCCTCTGGGTGCCAGTGGCTCTC
GCATCACTGGTCATCTGGTTCATGAGTTGCAGCGCAAGAAGCTAAAGTAC
GGCATTGGATCCGCGTGCATTGGTGGTGGTCAGGGCATCGCCCTTCTCCT
CGAGGCTGTCTAAAAGCTTTCTAGACCAT

BS09628.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-RA 1197 CG4600-PA 1..1197 17..1213 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-RA 1391 CG4600-RA 96..1292 17..1213 5985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9916051..9916981 202..1132 4655 100 Plus
2L 23513712 2L 9915621..9915791 32..202 855 100 Plus
2L 23513712 2L 9917040..9917121 1132..1213 410 100 Plus
Blast to na_te.dros performed 2014-11-28 00:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 1665..1710 473..518 113 71.7 Plus

BS09628.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:39 Download gff for BS09628.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 1..1197 17..1213 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:40 Download gff for BS09628.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 94..1294 17..1218 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:25 Download gff for BS09628.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 96..1290 17..1211 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:39 Download gff for BS09628.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 94..1294 17..1218 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:57 Download gff for BS09628.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 96..1290 17..1211 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:57 Download gff for BS09628.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9915348..9915366 17..35 100 -> Plus
2L 9915625..9915791 36..202 100 -> Plus
2L 9916052..9916980 203..1131 100 -> Plus
2L 9917040..9917119 1132..1211 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:25 Download gff for BS09628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9915348..9915366 17..35 100 -> Plus
arm_2L 9915625..9915791 36..202 100 -> Plus
arm_2L 9916052..9916980 203..1131 100 -> Plus
arm_2L 9917040..9917119 1132..1211 100   Plus

BS09628.pep Sequence

Translation from 16 to 1212

> BS09628.pep
MSAATKGIYIVAAKRTAFGTFGGSLKGINQTQLQTTAAKAALDAAGLKGE
QVDTVIVGNVIASSSTDGIYVPRHVGLNCGVPIEKPALGINRLCGSGFQS
IVNGAQDILVGGAKIALTGGVENMSQSPFIARNVRFGTTLGASYNLEDAL
WAGLTDTYCKLPMALTAENLADQYKISRERVDEFSLLSQKNWEKGQKEGA
FNAEITPIKLKVKGKEVDFVVDEHPRPKTTIEGLNKLPSLFKKNGVVTAG
TASGICDGASAVIVASEEALKEYNLKPLARLVAFSFVGVKPEIMGIGPVP
AIQNVLKVSGKKLEDIDLIEINEAFAAQTLACADALKLDTSKLNVNGGAI
ALGHPLGASGSRITGHLVHELQRKKLKYGIGSACIGGGQGIALLLEAV*

BS09628.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-PA 398 CG4600-PA 1..398 1..398 2005 100 Plus
CG9149-PA 392 CG9149-PA 4..389 8..396 820 43.4 Plus
CG10932-PB 410 CG10932-PB 25..408 8..396 613 35.5 Plus
CG10932-PA 410 CG10932-PA 25..408 8..396 613 35.5 Plus
Thiolase-PA 469 CG4581-PA 41..461 5..396 400 32.1 Plus