Clone BS09633 Report

Search the DGRC for BS09633

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptRpL4-RA
Protein status:BS09633.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09633.3prime Sequence

899 bp (862 high quality bases) assembled on 2006-04-19

> BS09633.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGGCCGCTGGCTTCTTGGCGGCGACC
TTCTTCTTGCGGGCGGCCAGCAGCTTGGCGCGATTGGCCGCAGCCTTGGT
GGCCACATTGGCGAAGTGCGACTTGGCCAGCTCGACGTTCTGCTTCTTGG
CCTTGGCCAGCACCTTGGCCACGGTGCGCTTCTCGGCGGCGAGGGCGGCA
CGACGCTTGAGGACCTCGGCATAGGGGTTAAGCTTGATCAGCTGGCGCAC
GTTGGTCAGGGGGTTCAGGCGGCGCACGCTGCGGAACACACGCTTGCGGG
GATCGCGCAACACCTTGCGGATCTCCTCAGACTTGAGCAGACGCGACAGA
TCGGTGTTGGCCATCTTGGGCTGGGGCAGGTTGTAGCCCTTCTTCAAGGT
GGACGGCTTCTTCCAGGTGCCGAACAGATCGTTCAGGCGGGCGAAAGCCG
ACTCGGTCCAGATGACAAAGCGACCGACATGACCGCCGGGGGCCAGCTTC
AGCAGATTGAGCTTGTCCACGTTGATGGTCTCAATGCCGGGGATGTTGCG
GAAGGCCTTGCGCAGACCCTCGTCCTTGTCGTAGACCACCAGGGGACCAC
GGCGAGCGATGCGGCGACGGTCGCGCATGGTACCACGGCCAGCACGGAAG
CGCTGCGACTTGTACACCTTCTGGATGTCAGCCCAGATCTTCAGGCGACG
CAGGAAGATGACAGCCTGCTTGGTCTTCTGGACCTTTTGCACCTCATCGG
ACACGACCAGCGGGAACTCGGAGACGCCGTCGATGACATGTCCCTTGGAC
TGGACCAGAGCTGGCACTCCTGAGGCGGCGATGGCCGACACCAGGGCGTA
GCGACGCTGGTTGACATTCACCTTGCGGTGCCAGCGACGGAACGTCTTG

BS09633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5502-PA 1206 RpL4-RA 324..1206 899..17 4415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-RA 1400 CG5502-RA 420..1303 899..16 4420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27924138..27924791 669..16 3270 100 Minus
3R 32079331 3R 27923509..27923743 899..665 1175 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:34:44 has no hits.

BS09633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:48 Download gff for BS09633.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-PA 324..1206 17..899 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:48 Download gff for BS09633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5502-PA 324..1206 17..899 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:35:07 Download gff for BS09633.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 420..1309 8..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:21:50 Download gff for BS09633.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 420..1309 8..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:21:50 Download gff for BS09633.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27923509..27923740 668..899 100 -> Minus
3R 27924140..27924797 8..667 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:35:07 Download gff for BS09633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23749231..23749462 668..899 100 -> Minus
arm_3R 23749862..23750519 8..667 99   Minus

BS09633.5prime Sequence

925 bp (848 high quality bases) assembled on 2006-04-19

> BS09633.5prime
GAAGTTATCAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCG
TGTACACGGAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCG
GCAGTGTTCAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCA
GCTGCTCCGCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTG
GTCACCAGACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGT
ATTCCCCGTGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTT
CGGCAACATGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCC
GTCGCTGGCACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTG
TCGGCCATCGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACA
TGTCATCGACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGC
AAAAGGTCCAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAG
ATCTGGGCTGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGG
CCGTGGTACCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGG
TGGTCTACGACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCC
GGCATTGAGACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCC
CGGCGGTCATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCC
GCCTGAACGATCTGTTCGGCACCTGGAAGAAGCCGTCCACCTTGAAGAAG
GGCTACAACCTGCCCCAGCCCCAGATGGCCAACACCGATCTGTCGCGTCT
GCTCAAGTCTGAGGAGATCCGCAAG

BS09633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5502-PA 1206 RpL4-RA 1..909 17..925 4520 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-RA 1400 CG5502-RA 97..1005 17..925 4530 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27923369..27923743 200..574 1875 100 Plus
3R 32079331 3R 27924138..27924493 570..925 1765 99.7 Plus
3R 32079331 3R 27923124..27923307 19..202 920 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:27:35 has no hits.

BS09633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:49 Download gff for BS09633.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:49 Download gff for BS09633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5502-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:45:05 Download gff for BS09633.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 87..1005 7..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:43 Download gff for BS09633.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 87..1005 7..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:43 Download gff for BS09633.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27923122..27923305 16..200 99 -> Plus
3R 27923370..27923740 201..571 100 -> Plus
3R 27924140..27924493 572..925 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:45:05 Download gff for BS09633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23748844..23749027 16..200 99 -> Plus
arm_3R 23749092..23749462 201..571 100 -> Plus
arm_3R 23749862..23750215 572..925 99   Plus

BS09633.complete Sequence

1238 bp (1238 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636457

> BS09633.complete
GAAGTTATCAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCG
TGTACACGGAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCG
GCAGTGTTCAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCA
GCTGCTCCGCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTG
GTCACCAGACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGT
ATTCCCCGTGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTT
CGGCAACATGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCC
GTCGCTGGCACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTG
TCGGCCATCGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACA
TGTCATCGACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGC
AAAAGGTCCAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAG
ATCTGGGCTGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGG
CCGTGGTACCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGG
TGGTCTACGACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCC
GGCATTGAGACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCC
CGGCGGTCATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCC
GCCTGAACGATCTGTTCGGCACCTGGAAGAAGCCGTCCACCTTGAAGAAG
GGCTACAACCTGCCCCAGCCCAAGATGGCCAACACCGATCTGTCGCGTCT
GCTCAAGTCTGAGGAGATCCGCAAGGTGTTGCGCGATCCCCGCAAGCGTG
TGTTCCGCAGCGTGCGCCGCCTGAACCCCCTGACCAACGTGCGCCAGCTG
ATCAAGCTTAACCCCTATGCCGAGGTCCTCAAGCGTCGTGCCGCCCTCGC
CGCCGAGAAGCGCACCGTGGCCAAGGTGCTGGCCAAGGCCAAGAAGCAGA
ACGTCGAGCTGGCCAAGTCGCACTTCGCCAATGTGGCCACCAAGGCTGCG
GCCAATCGCGCCAAGCTGCTGGCCGCCCGCAAGAAGAAGGTCGCCGCCAA
GAAGCCAGCGGCCAAGAAGTAAAAGCTTTCTAGACCAT

BS09633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-RA 1206 CG5502-PA 1..1206 17..1222 6030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-RA 1400 CG5502-RA 97..1303 17..1223 6035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27924138..27924791 570..1223 3270 100 Plus
3R 32079331 3R 27923369..27923743 200..574 1875 100 Plus
3R 32079331 3R 27923124..27923307 19..202 920 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:24:51 has no hits.

BS09633.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:40 Download gff for BS09633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 1..1206 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:42 Download gff for BS09633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 115..1337 7..1231 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:04 Download gff for BS09633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 97..1300 17..1220 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:40 Download gff for BS09633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 115..1337 7..1231 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:05 Download gff for BS09633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 97..1300 17..1220 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:05 Download gff for BS09633.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27923123..27923305 17..200 99 -> Plus
3R 27923370..27923740 201..571 100 -> Plus
3R 27924140..27924788 572..1220 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:04 Download gff for BS09633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23748845..23749027 17..200 99 -> Plus
arm_3R 23749092..23749462 201..571 100 -> Plus
arm_3R 23749862..23750510 572..1220 100   Plus

BS09633.pep Sequence

Translation from 16 to 1221

> BS09633.pep
MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRN
NRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR
GGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGV
SEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMR
DRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVG
RFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEE
IRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRT
VAKVLAKAKKQNVELAKSHFANVATKAAANRAKLLAARKKKVAAKKPAAK
K*

BS09633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-PA 401 CG5502-PA 1..401 1..401 2035 100 Plus