Clone Sequence Records
BS09633.3prime Sequence
899 bp (862 high quality bases) assembled on 2006-04-19
> BS09633.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGGCCGCTGGCTTCTTGGCGGCGACC
TTCTTCTTGCGGGCGGCCAGCAGCTTGGCGCGATTGGCCGCAGCCTTGGT
GGCCACATTGGCGAAGTGCGACTTGGCCAGCTCGACGTTCTGCTTCTTGG
CCTTGGCCAGCACCTTGGCCACGGTGCGCTTCTCGGCGGCGAGGGCGGCA
CGACGCTTGAGGACCTCGGCATAGGGGTTAAGCTTGATCAGCTGGCGCAC
GTTGGTCAGGGGGTTCAGGCGGCGCACGCTGCGGAACACACGCTTGCGGG
GATCGCGCAACACCTTGCGGATCTCCTCAGACTTGAGCAGACGCGACAGA
TCGGTGTTGGCCATCTTGGGCTGGGGCAGGTTGTAGCCCTTCTTCAAGGT
GGACGGCTTCTTCCAGGTGCCGAACAGATCGTTCAGGCGGGCGAAAGCCG
ACTCGGTCCAGATGACAAAGCGACCGACATGACCGCCGGGGGCCAGCTTC
AGCAGATTGAGCTTGTCCACGTTGATGGTCTCAATGCCGGGGATGTTGCG
GAAGGCCTTGCGCAGACCCTCGTCCTTGTCGTAGACCACCAGGGGACCAC
GGCGAGCGATGCGGCGACGGTCGCGCATGGTACCACGGCCAGCACGGAAG
CGCTGCGACTTGTACACCTTCTGGATGTCAGCCCAGATCTTCAGGCGACG
CAGGAAGATGACAGCCTGCTTGGTCTTCTGGACCTTTTGCACCTCATCGG
ACACGACCAGCGGGAACTCGGAGACGCCGTCGATGACATGTCCCTTGGAC
TGGACCAGAGCTGGCACTCCTGAGGCGGCGATGGCCGACACCAGGGCGTA
GCGACGCTGGTTGACATTCACCTTGCGGTGCCAGCGACGGAACGTCTTG
BS09633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5502-PA | 1206 | RpL4-RA | 324..1206 | 899..17 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-RA | 1400 | CG5502-RA | 420..1303 | 899..16 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27924138..27924791 | 669..16 | 3270 | 100 | Minus |
3R | 32079331 | 3R | 27923509..27923743 | 899..665 | 1175 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:34:44 has no hits.
BS09633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:48 Download gff for
BS09633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-PA | 324..1206 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:48 Download gff for
BS09633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5502-PA | 324..1206 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:35:07 Download gff for
BS09633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 420..1309 | 8..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:21:50 Download gff for
BS09633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 420..1309 | 8..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:21:50 Download gff for
BS09633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27923509..27923740 | 668..899 | 100 | -> | Minus |
3R | 27924140..27924797 | 8..667 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:35:07 Download gff for
BS09633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23749231..23749462 | 668..899 | 100 | -> | Minus |
arm_3R | 23749862..23750519 | 8..667 | 99 | | Minus |
BS09633.5prime Sequence
925 bp (848 high quality bases) assembled on 2006-04-19
> BS09633.5prime
GAAGTTATCAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCG
TGTACACGGAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCG
GCAGTGTTCAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCA
GCTGCTCCGCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTG
GTCACCAGACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGT
ATTCCCCGTGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTT
CGGCAACATGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCC
GTCGCTGGCACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTG
TCGGCCATCGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACA
TGTCATCGACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGC
AAAAGGTCCAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAG
ATCTGGGCTGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGG
CCGTGGTACCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGG
TGGTCTACGACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCC
GGCATTGAGACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCC
CGGCGGTCATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCC
GCCTGAACGATCTGTTCGGCACCTGGAAGAAGCCGTCCACCTTGAAGAAG
GGCTACAACCTGCCCCAGCCCCAGATGGCCAACACCGATCTGTCGCGTCT
GCTCAAGTCTGAGGAGATCCGCAAG
BS09633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5502-PA | 1206 | RpL4-RA | 1..909 | 17..925 | 4520 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-RA | 1400 | CG5502-RA | 97..1005 | 17..925 | 4530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27923369..27923743 | 200..574 | 1875 | 100 | Plus |
3R | 32079331 | 3R | 27924138..27924493 | 570..925 | 1765 | 99.7 | Plus |
3R | 32079331 | 3R | 27923124..27923307 | 19..202 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:27:35 has no hits.
BS09633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:49 Download gff for
BS09633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:49 Download gff for
BS09633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5502-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:45:05 Download gff for
BS09633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 87..1005 | 7..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:43 Download gff for
BS09633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 87..1005 | 7..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:43 Download gff for
BS09633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27923122..27923305 | 16..200 | 99 | -> | Plus |
3R | 27923370..27923740 | 201..571 | 100 | -> | Plus |
3R | 27924140..27924493 | 572..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:45:05 Download gff for
BS09633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23748844..23749027 | 16..200 | 99 | -> | Plus |
arm_3R | 23749092..23749462 | 201..571 | 100 | -> | Plus |
arm_3R | 23749862..23750215 | 572..925 | 99 | | Plus |
BS09633.complete Sequence
1238 bp (1238 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636457
> BS09633.complete
GAAGTTATCAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCG
TGTACACGGAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCG
GCAGTGTTCAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCA
GCTGCTCCGCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTG
GTCACCAGACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGT
ATTCCCCGTGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTT
CGGCAACATGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCC
GTCGCTGGCACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTG
TCGGCCATCGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACA
TGTCATCGACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGC
AAAAGGTCCAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAG
ATCTGGGCTGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGG
CCGTGGTACCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGG
TGGTCTACGACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCC
GGCATTGAGACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCC
CGGCGGTCATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCC
GCCTGAACGATCTGTTCGGCACCTGGAAGAAGCCGTCCACCTTGAAGAAG
GGCTACAACCTGCCCCAGCCCAAGATGGCCAACACCGATCTGTCGCGTCT
GCTCAAGTCTGAGGAGATCCGCAAGGTGTTGCGCGATCCCCGCAAGCGTG
TGTTCCGCAGCGTGCGCCGCCTGAACCCCCTGACCAACGTGCGCCAGCTG
ATCAAGCTTAACCCCTATGCCGAGGTCCTCAAGCGTCGTGCCGCCCTCGC
CGCCGAGAAGCGCACCGTGGCCAAGGTGCTGGCCAAGGCCAAGAAGCAGA
ACGTCGAGCTGGCCAAGTCGCACTTCGCCAATGTGGCCACCAAGGCTGCG
GCCAATCGCGCCAAGCTGCTGGCCGCCCGCAAGAAGAAGGTCGCCGCCAA
GAAGCCAGCGGCCAAGAAGTAAAAGCTTTCTAGACCAT
BS09633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-RA | 1206 | CG5502-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-RA | 1400 | CG5502-RA | 97..1303 | 17..1223 | 6035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27924138..27924791 | 570..1223 | 3270 | 100 | Plus |
3R | 32079331 | 3R | 27923369..27923743 | 200..574 | 1875 | 100 | Plus |
3R | 32079331 | 3R | 27923124..27923307 | 19..202 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:24:51 has no hits.
BS09633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:40 Download gff for
BS09633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 1..1206 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:42 Download gff for
BS09633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 115..1337 | 7..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:04 Download gff for
BS09633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 97..1300 | 17..1220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:40 Download gff for
BS09633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 115..1337 | 7..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:05 Download gff for
BS09633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 97..1300 | 17..1220 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:05 Download gff for
BS09633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27923123..27923305 | 17..200 | 99 | -> | Plus |
3R | 27923370..27923740 | 201..571 | 100 | -> | Plus |
3R | 27924140..27924788 | 572..1220 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:04 Download gff for
BS09633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23748845..23749027 | 17..200 | 99 | -> | Plus |
arm_3R | 23749092..23749462 | 201..571 | 100 | -> | Plus |
arm_3R | 23749862..23750510 | 572..1220 | 100 | | Plus |
BS09633.pep Sequence
Translation from 16 to 1221
> BS09633.pep
MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRN
NRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR
GGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGV
SEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMR
DRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVG
RFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEE
IRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRT
VAKVLAKAKKQNVELAKSHFANVATKAAANRAKLLAARKKKVAAKKPAAK
K*
BS09633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-PA | 401 | CG5502-PA | 1..401 | 1..401 | 2035 | 100 | Plus |