Clone Sequence Records
BS09636.3prime Sequence
918 bp (816 high quality bases) assembled on 2006-04-19
> BS09636.3prime
ATGGTCTAGAAAGCTTTTAGGCCTTCGATGCAATTTCAAGGGCCTGCTCC
AGATCCTTGATCAAATCATCGGCATCCTCCAGTCCGACGGACAAGCGAAC
TAGACCGTCAGTGATGCCCAAAGTTTTCCTATCCTCCGCTGGAACCGAGG
CATGGGTCATTATTGATGGAAGCTCGGCCAGACTCTCGTAGCCACCCAGA
CTCTCTGCCAGGGTGAACACCTTGAGGGCCTTGAGGAAAGCCGAGGAGTG
CTTCAGCTCGCCCTTAATGTAGAAGGAGAACACGCCGCTGTATCCGTATG
CCTGCTTCAGAGCGATCTTGTGCTGCGGATGGGAGGGCAAAGAGGGATGC
AACACCTTCTCCACGAACGGATTCGTCTCCAGGTATTTGGCAACCTTCAG
AGCATTCTTCTGGTGCTGTTCCATGCGCAGCGAGAGCGTCTTAAGACTTC
TGTTCACCTGATAGCAGTCGAATGGAGACGGCACAATGCCCACTGCGTTC
TGCAGGAACTTCAAGCTTTTGTAGAGCTTCTCCGAGTTCATGGTGATGCC
ACCCATGACCACATCCGTATGACCGTTCATGTACTTGGTCAGGGAGTAGC
AGACCAGATCAGCGCCCAGCTCCAAGGGTCGCTGGAAGTAGGAGGTCAGG
AAGGTGTTGTCGACGGCCAGGACGATATCCTCGCGTACTCCATGGACCAG
CTGCGCAATAGCCTCGATGTCGGCTACCTTTACCAATGGATTAGTTGGTG
ACTCGATCCACACCAACTTGGTCTCCGGCTTGATGGAACTTTTATTAGAT
CCAACTTCGTGGGATCCACAAAGGTGGCTGAGATTCCCAGACGGGTGGCA
ACCTGTCGGATCAAACGGTTGGTGCCTCCGTAAACATCGTCGCCCATGAT
GATGTGATCGCCGCTGCT
BS09636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5345-PA | 1182 | Eip55E-RA | 405..1182 | 794..17 | 3890 | 100 | Minus |
| CG5345-PA | 1182 | Eip55E-RA | 280..404 | 918..794 | 625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip55E-RB | 1478 | CG5345-RB | 357..1259 | 918..17 | 4490 | 99.9 | Minus |
| Eip55E-RA | 1362 | CG5345-RA | 357..1259 | 918..17 | 4490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18628274..18629176 | 918..17 | 4465 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:28:04 has no hits.
BS09636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:54 Download gff for
BS09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5345-PA | 280..1182 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:56 Download gff for
BS09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5345-PA | 280..1182 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:08:28 Download gff for
BS09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip55E-RA | 357..1265 | 8..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:47:36 Download gff for
BS09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip55E-RA | 357..1265 | 8..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:47:36 Download gff for
BS09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18628274..18629182 | 8..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:08:28 Download gff for
BS09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14515779..14516687 | 8..918 | 99 | | Minus |
BS09636.5prime Sequence
904 bp (823 high quality bases) assembled on 2006-04-19
> BS09636.5prime
GAAGTTATCAGTCGACATGAGCTACAGAGTCCAGCCGAGCGGCTTCGCCA
CCAAGTCCATCCACTCGGGCCAGAGCCCCGACCAGTGGAAGAGTGCTGCC
GTGATTCCGCCGATATCGCTGAGCACCACCTTCAAGCAAGATGCACCGGG
CGAGCACAGGGGCTATGAGTACTCCCGCAGTGGAAATCCCACTAGGAACG
TGCTGGAGACGTGCTTCGCCGCCTTGGATAATGCCAAATACGGCCTCACG
TTCTCATCGGGATTGGGAGCCACCACCGCTGTGCTAACTATGCTGAGCAG
CGGCGATCACATCATCATGGGCGACGATGTTTACGGAGGCACCAACCGTT
TGATCCGACAGGTTGCCACCCGTCTGGGAATCTCAGCCACCTTTGTGGAT
CCCACGAAGTTGGATCTAATTAAAAGTTCCATCAAGCCGGAGACCAAGTT
GGTGTGGATCGAGTCACCAACTAATCCATTGGTAAAGGTAGCCGACATCG
AGGCTATTGCGCAGCTGGTCCATGGAGTACGCGAGGATATCGTCCTGGCC
GTCGACAACACCTTCCTGACCTCCTACTTCCAGCGACCCTTGGAGCTGGG
CGCTGATCTGGTCTGCTACTCCCTGACCAAGTACATGAACGGTCATACGG
ATGTGGTCATGGGTGGCATCACCATGAACTCGGAGAAGCTCTACAAAAGC
TTGAAGTTCCTGCAGAACGCAGTGGGCATTGTGCCGTCTCCATTCGACTG
CTATCAGGTGAACAGAAGTCTTAAGACGCTCTCGCTGCGCATGGAACAGC
ACCAGAAGAATGCTCTGAAGGTTGCCAAATACCTGGAGACGAATCCGTTC
GTGGAGAAGGTGTTGCATCCCTCTTTGCCCTCCCATCCGCAGCACAAGAT
CGCT
BS09636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5345-PA | 1182 | Eip55E-RA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip55E-RB | 1478 | CG5345-RB | 78..965 | 17..904 | 4440 | 100 | Plus |
| Eip55E-RA | 1362 | CG5345-RA | 78..965 | 17..904 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18627995..18628882 | 17..904 | 4440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:55:54 has no hits.
BS09636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:55 Download gff for
BS09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5345-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:27:58 Download gff for
BS09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5345-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:41:44 Download gff for
BS09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip55E-RA | 70..965 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:34:20 Download gff for
BS09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip55E-RA | 70..965 | 9..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:34:20 Download gff for
BS09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18627987..18628882 | 9..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:41:44 Download gff for
BS09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14515492..14516387 | 9..904 | 99 | | Plus |
BS09636.complete Sequence
1214 bp (1214 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636458
> BS09636.complete
GAAGTTATCAGTCGACATGAGCTACAGAGTCCAGCCGAGCGGCTTCGCCA
CCAAGTCCATCCACTCGGGCCAGAGCCCCGACCAGTGGAAGAGTGCTGCC
GTGATTCCGCCGATATCGCTGAGCACCACCTTCAAGCAAGATGCACCGGG
CGAGCACAGGGGCTATGAGTACTCCCGCAGTGGAAATCCCACTAGGAACG
TGCTGGAGACGTGCTTCGCCGCCTTGGATAATGCCAAATACGGCCTCACG
TTCTCATCGGGATTGGGAGCCACCACCGCTGTGCTAACTATGCTGAGCAG
CGGCGATCACATCATCATGGGCGACGATGTTTACGGAGGCACCAACCGTT
TGATCCGACAGGTTGCCACCCGTCTGGGAATCTCAGCCACCTTTGTGGAT
CCCACGAAGTTGGATCTAATTAAAAGTTCCATCAAGCCGGAGACCAAGTT
GGTGTGGATCGAGTCACCAACTAATCCATTGGTAAAGGTAGCCGACATCG
AGGCTATTGCGCAGCTGGTCCATGGAGTACGCGAGGATATCGTCCTGGCC
GTCGACAACACCTTCCTGACCTCCTACTTCCAGCGACCCTTGGAGCTGGG
CGCTGATCTGGTCTGCTACTCCCTGACCAAGTACATGAACGGTCATACGG
ATGTGGTCATGGGTGGCATCACCATGAACTCGGAGAAGCTCTACAAAAGC
TTGAAGTTCCTGCAGAACGCAGTGGGCATTGTGCCGTCTCCATTCGACTG
CTATCAGGTGAACAGAAGTCTTAAGACGCTCTCGCTGCGCATGGAACAGC
ACCAGAAGAATGCTCTGAAGGTTGCCAAATACCTGGAGACGAATCCGTTC
GTGGAGAAGGTGTTGCATCCCTCTTTGCCCTCCCATCCGCAGCACAAGAT
CGCTCTGAAGCAGGCATACGGATACAGCGGCGTGTTCTCCTTCTACATTA
AGGGCGAGCTGAAGCACTCCTCGGCTTTCCTCAAGGCCCTCAAGGTGTTC
ACCCTGGCAGAGAGTCTGGGTGGCTACGAGAGTCTGGCCGAGCTTCCATC
AATAATGACCCATGCCTCGGTTCCAGCGGAGGATAGGAAAACTTTGGGCA
TCACTGACGGTCTAGTTCGCTTGTCCGTCGGACTGGAGGATGCCGATGAT
TTGATCAAGGATCTGGAGCAGGCCCTTGAAATTGCATCGAAGGCCTAAAA
GCTTTCTAGACCAT
BS09636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip55E-RB | 1182 | CG5345-PB | 1..1182 | 17..1198 | 5910 | 100 | Plus |
| Eip55E-RA | 1182 | CG5345-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip55E-RB | 1478 | CG5345-RB | 78..1259 | 17..1198 | 5910 | 100 | Plus |
| Eip55E-RA | 1362 | CG5345-RA | 78..1259 | 17..1198 | 5910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18627995..18629176 | 17..1198 | 5910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:07:05 has no hits.
BS09636.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:41 Download gff for
BS09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip55E-RA | 1..1182 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:43 Download gff for
BS09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip55E-RA | 94..1289 | 9..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:33 Download gff for
BS09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip55E-RA | 78..1257 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:41 Download gff for
BS09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip55E-RA | 94..1289 | 9..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:03 Download gff for
BS09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip55E-RA | 78..1257 | 17..1196 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:03 Download gff for
BS09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18627995..18629174 | 17..1196 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:33 Download gff for
BS09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14515500..14516679 | 17..1196 | 100 | | Plus |
BS09636.pep Sequence
Translation from 16 to 1197
> BS09636.pep
MSYRVQPSGFATKSIHSGQSPDQWKSAAVIPPISLSTTFKQDAPGEHRGY
EYSRSGNPTRNVLETCFAALDNAKYGLTFSSGLGATTAVLTMLSSGDHII
MGDDVYGGTNRLIRQVATRLGISATFVDPTKLDLIKSSIKPETKLVWIES
PTNPLVKVADIEAIAQLVHGVREDIVLAVDNTFLTSYFQRPLELGADLVC
YSLTKYMNGHTDVVMGGITMNSEKLYKSLKFLQNAVGIVPSPFDCYQVNR
SLKTLSLRMEQHQKNALKVAKYLETNPFVEKVLHPSLPSHPQHKIALKQA
YGYSGVFSFYIKGELKHSSAFLKALKVFTLAESLGGYESLAELPSIMTHA
SVPAEDRKTLGITDGLVRLSVGLEDADDLIKDLEQALEIASKA*
BS09636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip55E-PB | 393 | CG5345-PB | 1..393 | 1..393 | 2001 | 100 | Plus |
| Eip55E-PA | 393 | CG5345-PA | 1..393 | 1..393 | 2001 | 100 | Plus |
