Clone Sequence Records
BS09639.complete Sequence
1886 bp assembled on 2009-12-07
GenBank Submission: KX803605
> BS09639.complete
GAAGTTATCAGTCGACATGTTCCCCCACTTGAAGGGCCATGGTCAGCGGG
TCAACCTGCAGTTGCTGCAGGAGGCCGCCTGCCGCGAGCTGCTGCAGCAG
CTGGACCGCATTGAGGGTTCCAAGGTTATTGTGCTGGACGAGACCATGAT
CGGACCGCTGGACTTGGTTACCCGGCCAAAGTTATTCGCTGATCGAGGCA
TCCGTCTGCTGGCCCTCAAGCCGGAGCTTCATTTGCCGCGCGAGGTGGCC
AATGTGGTGTACGTGATGCGCCCACGCGTGGCGCTGATGGAGCAGCTGGC
CGCCCACGTGAAGGCAGGCGGAAGAGCGGCCGCTGGACGGCAGTACCACA
TCCTGTTCGCCCCGAGGCGGTCATGTCTGTGCGTCAGCCAACTGGAGGTC
AGCGGCGTGTTGGGCAGCTTCGGAAACATCGAGGAACTGGCCTGGAACTA
TCTGCCGCTGGATGTCGACCTGGTATCGATGGAGATGCCCAATGCCTTCC
GCGATGTGAGTGTGGACGGTGACACTAGCTCGCTGTATCAGGCGGCAGTG
GGCCTAGTGCAGCTGCAGCGTCTATACGGTCGCATTCCGAAGATCTACGG
AAAAGGAGAGTTTGCGCACAGGGTATGGGAGCACGCCAAGCAGCTGGGCC
GGGATGAGCGGACTCTGTACAACGGCGACAAGGGTGTCGTCGATCAGTTG
ATCCTTCTGGACAGAAGCATCGATCTGCTCAGCCCGCTGGCCACACAACT
CACCTACGAGGGGCTTATCGATGAGTTCTACGGCATCCGGCAGAACAAAC
TGACGCTGCCCGCCGAGAACTTTCCCTCTGACGGAGCCCTTCCCGGAGGC
GGAGGCAGTGGCCCACGAGTCGAGGAATCGCAGTCGCTGCTGGGTGACAC
CGAGAAAAAGACCATCCTACTGCACTCCGGCGAGCAGTTGTACGCGGAGC
TGCGGAACAAGCACTTCAACGAGGTCACCAAGCTGCTCGCTCGCAAGGCA
CGGGAAATTCACGTCCAGATGCACGCCACCTCCCAGGACAAGAGCGTGCA
GGAGATCAAGAGCTTCGTCGAGAACCTCCTGCCGCAGCTAATGGCCCAGA
AGAAGGCCACCTCTGAGCATACGGCCATCGCTGGCCTCCTGCACGAACAG
GTGAACGCGGTGCGCTTCGCTGACGACCTGGCTGCCGAGCAGGAGTTCAT
GGTCTGCGCAGATATCGACAAGCCAAGCGCCTACATCGAGGACCTGATTG
CCTGCAGGGTGGAGTTGAATCGCGTCCTGCGGCTCATCTGCATGCAGTGC
CACGCCGCCTCCGGATTCAAGGAGAAGCTGCTTAACCACTACAAGCGCGA
ACTGGTCCATGTGTACGGTCTGGAAGTGCTGCTCACCATCAGCAACCTGG
AGAAATCGGGCCTGCTCCATCTGCAAACAGAGTCGCGGGCTTACAGCGTT
CTGCGAAAGACGCTGCACCTCACGGTGGACGACAACGTTGAAATTGAGCC
AAAGGACATCAGCTACGTGCACAGCTTCTACGCTCCGCTGACCGCGCGCA
TTGTGGAGCATTCGCTCAAACCGCTGGGTTGGCAGACGCTTAAGAGCCAA
ATCAATAACCTGCCCGGACCGACGTTCGAGGACTTTCAGGCGCAGTTGGT
GGGCATCGGTGGACGGCATACGGTCACCACAGTCAGCGAGGGATCCCTAC
TGAATGTGCCGCGAGTGGTGCTCGTCTGCTTTGTGGGCGGATGCACGTTC
GCTGAAATAGCTGCGCTGCGTTTCCTCGCCGCCCAGGAGGACAACAACGT
GGAGTTCCTGATTGCCACCACGAAGGTGGTCAACAAACACTCCTTCCTGG
ACAGCCTGATGAGCTCGTGAAAGCTTTCTAGACCAT
BS09639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| car-RC | 1920 | CG12230-PC | 1..1854 | 17..1870 | 9270 | 100 | Plus |
| car-RA | 1854 | CG12230-PA | 1..1854 | 17..1870 | 9270 | 100 | Plus |
| car-RB | 1854 | CG12230-PB | 1..1854 | 17..1870 | 9270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| car-RC | 3173 | CG12230-RC | 235..2089 | 16..1870 | 9275 | 100 | Plus |
| car-RA | 3097 | CG12230-RA | 159..2013 | 16..1870 | 9275 | 100 | Plus |
| car-RB | 3173 | CG12230-RB | 235..2089 | 16..1870 | 9275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19566341..19567784 | 16..1459 | 7220 | 100 | Plus |
| X | 23542271 | X | 19567905..19568317 | 1458..1870 | 2065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:10:23 has no hits.
BS09639.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:30 Download gff for
BS09639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-RA | 148..1995 | 22..1869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:43 Download gff for
BS09639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-RB | 241..2088 | 22..1869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:28 Download gff for
BS09639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-RA | 148..1995 | 22..1869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:26 Download gff for
BS09639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-RB | 241..2088 | 22..1869 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:26 Download gff for
BS09639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19566347..19567784 | 22..1459 | 100 | -> | Plus |
| X | 19567907..19568316 | 1460..1869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:43 Download gff for
BS09639.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19460380..19461817 | 22..1459 | 100 | -> | Plus |
| arm_X | 19461940..19462349 | 1460..1869 | 100 | | Plus |
BS09639.3prime Sequence
887 bp (850 high quality bases) assembled on 2006-04-19
> BS09639.3prime
ATGGTCTAGAAAGCTTTCACGAGCTCATCAGGCTGTCCAGGAAGGAGTGT
TTGTTGACCACCTTCGTGGTGGCAATCAGGAACTCCACGTTGTTGTCCTC
CTGGGCGGCGAGGAAACGCAGCGCAGCTATTTCAGCGAACGTGCATCCGC
CCACAAAGCAGACGAGCACCACTCGCGGCACATTCAGTAGGGATCCCTCG
CTGACTGTGGTGACCGTATGCCGTCCACCGATGCCCACCAACTGCGCCTG
AAAGTCCTCGAACGTCGGTCCGGGCAGGTTATTGATTTGGCTCTTAAGCG
TCTGCCAACCCAGCGGTTTGAGCGAATGCTCCACAATGCGCGCGGTCAGC
GGAGCGTAGAAGCTGTGCACGTAGCTGATGTCCTTTGGCTCAATTTCAAC
GTTGTCGTCCACCGTGAGGTGCAGCGTCTTTCGCAGAACGCTGTAAGCCC
GCGACTCTGTTTGCAGATGGAGCAGGCCCGATTTCTCCAGGTTGCTGATG
GTGAGCAGCACTTCCAGACCGTACACATGGACCAGTTCGCGCTTGTAGTG
GTTAAGCAGCTTCTCCTTGAATCCGGAGGCGGCGTGGCACTGCATGCAGA
TGAGCCGCAGGACGCGATTCAACTCCACCCTGCAGGCAATCAGGTCCTCG
ATGTAGGCGCTTGGCTTGTCGATATCTGCGCAGACCATGAACTCCTGCTC
GGCAGCCAGGTCGTCAGCGAAGCGCACCGCGTTCACCTGTTCGTGCAGGA
GGCCAGCGATGGCCGTATGCTCAGAGGTGGCCTTCTTCTGGGCCATTAGC
TGCGGCAGGAGGTTCTCGACGAAGCTCTTGATCTCCTGCACGCTCTTGTC
CTGGGAGGTGGCGTGCATCTGGACGTGAATTTCCCGT
BS09639.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12230-PB | 1854 | car-RB | 984..1854 | 887..17 | 4355 | 100 | Minus |
| CG12230-PA | 1854 | car-RA | 984..1854 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| car-RC | 3173 | CG12230-RC | 1219..2089 | 887..17 | 4355 | 100 | Minus |
| car-RA | 3097 | CG12230-RA | 1143..2013 | 887..17 | 4355 | 100 | Minus |
| car-RB | 3173 | CG12230-RB | 1219..2089 | 887..17 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19567325..19567784 | 887..428 | 2300 | 100 | Minus |
| X | 23542271 | X | 19567905..19568317 | 429..17 | 2065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:31:55 has no hits.
BS09639.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:58 Download gff for
BS09639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-PB | 984..1854 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:02 Download gff for
BS09639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12230-PA | 984..1854 | 17..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:15:45 Download gff for
BS09639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-RB | 1219..2092 | 13..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:24:12 Download gff for
BS09639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-RB | 1219..2092 | 13..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:24:12 Download gff for
BS09639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19567325..19567784 | 428..887 | 100 | -> | Minus |
| X | 19567907..19568320 | 13..427 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:15:45 Download gff for
BS09639.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19461358..19461817 | 428..887 | 100 | -> | Minus |
| arm_X | 19461940..19462353 | 13..427 | 99 | | Minus |
BS09639.5prime Sequence
933 bp (794 high quality bases) assembled on 2006-04-19
> BS09639.5prime
GAAGTTATCAGTCGACATGTTCCCCCACTTGAAGGGCCATGGTCAGCGGG
TCAACCTGCAGTTGCTGCAGGAGGCCGCCTGCCGCGAGCTGCTGCAGCAG
CTGGACCGCATTGAGGGTTCCAAGGTTATTGTGCTGGACGAGACCATGAT
CGGACCGCTGGACTTGGTTACCCGGCCAAAGTTATTCGCTGATCGAGGCA
TCCGTCTGCTGGCCCTCAAGCCGGAGCTTCATTTGCCGCGCGAGGTGGCC
AATGTGGTGTACGTGATGCGCCCACGCGTGGCGCTGATGGAGCAGCTGGC
CGCCCACGTGAAGGCAGGCGGAAGAGCGGCCGCTGGACGGCAGTACCACA
TCCTGTTCGCCCCGAGGCGGTCATGTCTGTGCGTCAGCCAACTGGAGGTC
AGCGGCGTGTTGGGCAGCTTCGGAAACATCGAGGAACTGGCCTGGAACTA
TCTGCCGCTGGATGTCGACCTGGTATCGATGGAGATGCCCAATGCCTTCC
GCGATGTGAGTGTGGACGGTGACACTAGCTCGCTGTATCAGGCGGCAGTG
GGCCTAGTGCAGCTGCAGCGTCTATACGGTCGCATTCCGAAGATCTACGG
AAAAGGAGAGTTTGCGCACAGGGTATGGGAGCACGCCAAGCAGCTGGGCC
GGGATGAGCGGACTCTGTACAACGGCGACAAGGGTGTCGTCGATCAGTTG
ATCCTTCTGGACAGAAGCATCGATCTGCTCAGCCCGCTGGCCACACAACT
CACCTACGAGGGGCTTATCGATGAGTTCTACGGCATCCGGCAGAACAAAC
TGACGCTGCCCGCCGAGAACTTTCCCTCTGACGGAGCCCTTCCCGGAGGC
GGAAGCAGTGGCCCACGAGTCGAGAAATCGCAGTCGCTGCTGGGTGACAC
CGAGAAAAAGACCATCTACTGCACTCCGGCGAG
BS09639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12230-PB | 1854 | car-RB | 1..900 | 17..916 | 4450 | 99.7 | Plus |
| CG12230-PA | 1854 | car-RA | 1..900 | 17..916 | 4450 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| car-RC | 3173 | CG12230-RC | 235..1153 | 16..933 | 4540 | 99.7 | Plus |
| car-RA | 3097 | CG12230-RA | 159..1077 | 16..933 | 4540 | 99.7 | Plus |
| car-RB | 3173 | CG12230-RB | 235..1153 | 16..933 | 4540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19566341..19567259 | 16..933 | 4515 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:03:11 has no hits.
BS09639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:15:59 Download gff for
BS09639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-PB | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:04 Download gff for
BS09639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12230-PA | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:48 Download gff for
BS09639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-RB | 230..1153 | 10..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:16 Download gff for
BS09639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| car-RB | 230..1153 | 10..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:16 Download gff for
BS09639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19566336..19567259 | 10..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:48 Download gff for
BS09639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19460369..19461292 | 10..933 | 99 | | Plus |
BS09639.pep Sequence
Translation from 16 to 1869
> BS09639.pep
MFPHLKGHGQRVNLQLLQEAACRELLQQLDRIEGSKVIVLDETMIGPLDL
VTRPKLFADRGIRLLALKPELHLPREVANVVYVMRPRVALMEQLAAHVKA
GGRAAAGRQYHILFAPRRSCLCVSQLEVSGVLGSFGNIEELAWNYLPLDV
DLVSMEMPNAFRDVSVDGDTSSLYQAAVGLVQLQRLYGRIPKIYGKGEFA
HRVWEHAKQLGRDERTLYNGDKGVVDQLILLDRSIDLLSPLATQLTYEGL
IDEFYGIRQNKLTLPAENFPSDGALPGGGGSGPRVEESQSLLGDTEKKTI
LLHSGEQLYAELRNKHFNEVTKLLARKAREIHVQMHATSQDKSVQEIKSF
VENLLPQLMAQKKATSEHTAIAGLLHEQVNAVRFADDLAAEQEFMVCADI
DKPSAYIEDLIACRVELNRVLRLICMQCHAASGFKEKLLNHYKRELVHVY
GLEVLLTISNLEKSGLLHLQTESRAYSVLRKTLHLTVDDNVEIEPKDISY
VHSFYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGIGGR
HTVTTVSEGSLLNVPRVVLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIA
TTKVVNKHSFLDSLMSS*
BS09639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| car-PC | 639 | CG12230-PC | 1..617 | 1..617 | 3144 | 100 | Plus |
| car-PA | 617 | CG12230-PA | 1..617 | 1..617 | 3144 | 100 | Plus |
| car-PB | 617 | CG12230-PB | 1..617 | 1..617 | 3144 | 100 | Plus |
