Clone BS09643 Report

Search the DGRC for BS09643

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG2818-RA
Protein status:BS09643.pep: full length peptide match
Sequenced Size:2156

Clone Sequence Records

BS09643.3prime Sequence

886 bp (862 high quality bases) assembled on 2006-04-19

> BS09643.3prime
ATGGTCTAGAAAGCTTCTATGCCTGCTGCTCCTCGTTTCCGTCGGCAGAG
GTGTGCCACACATGCCCCATTTCCAGGGCCTGCAACTTGAGCAGTTCCTT
TTGGCTGTCCTTGGCCTGAAGGTGGAACACACTTTGCTTGACCTCCTTGG
TGGTCAGGACATCCATTTTGTCGTAGATGATGGCGTGCAGGCCGAGTTCC
TTTAACAGCTTGATGGTATCCTTGGAGTTGTTATCGTCGCCCCAACAAAA
CAGCACCAATCCACGCTCCTTGGCCAGATTCACCTGACTGGGATCTCGCA
GCAGGTCCTCCGTGTGTGCCACAACACCCAGGAACTCCATGGCCACCGCG
TGCCACACGGCCAGCTCCATGGAGTTGCCCCTGGGGTCCATATACTTCTG
GTATTTCGTCGTCCTGCCGAGAGTTAGGAACATGACAGGGTATCGATTTT
GCTTGAATCTCAGAATAGTGCAGATATCTGGATCAAAACAACTCAGTACT
ATCCTGCGATTCCCTGCCTTTCGTAGGATGACATCCAATATGCAATCGAT
ATAGAGATTTCTGTCCACCACATGCTCGAATTCCTCCTCCATTTTGCCGT
CCTCTAGCCTCTGAGACCACTTAATTTCTATGTTGAAACCCACATGGACA
TCTAGGGCATCCAGGACATCGCATAGCTGCGGAAACGGCTGGTGCTCTAA
ACAATCATCGTTGTGAAACGAACGCGTCTCCCTGGACAGACCCTCAGCAA
TGTGATAGACTTTCAATTTCTTCAACTGCTCCAGGGACAACTCCCTCATC
GGTAGAGCGAGGAAATCGTGCTCCTGCAGACTGCACTTCGACTTTAGTGA
AACATAGATCATGAAATCGTGATACACCACTGGCAC

BS09643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2818-PA 2124 CG2818-RA 1255..2124 886..17 4350 100 Minus
CG2818-PB 1566 CG2818-RB 697..1566 886..17 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2818-RB 2228 CG2818-RB 1057..1928 886..15 4360 100 Minus
CG2818-RA 2804 CG2818-RA 1633..2504 886..15 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3715502..3716106 886..282 3025 100 Minus
2L 23513712 2L 3716155..3716303 285..137 745 100 Minus
2L 23513712 2L 3716387..3716510 138..15 620 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:29:04 has no hits.

BS09643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:05 Download gff for BS09643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2818-PA 1255..2124 17..886 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:12 Download gff for BS09643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2818-PB 697..1566 17..886 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:11:57 Download gff for BS09643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2818-RA 1633..2507 10..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:34 Download gff for BS09643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2818-RA 1633..2507 10..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:34 Download gff for BS09643.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3715502..3716104 284..886 100 -> Minus
2L 3716157..3716303 137..283 100 -> Minus
2L 3716389..3716513 10..136 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:11:57 Download gff for BS09643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3715502..3716104 284..886 100 -> Minus
arm_2L 3716157..3716303 137..283 100 -> Minus
arm_2L 3716389..3716513 10..136 98   Minus

BS09643.5prime Sequence

910 bp (858 high quality bases) assembled on 2006-04-19

> BS09643.5prime
GAAGTTATCAGTCGACATGCACAACTGGCTGGCCTCACATAACGGCGATG
AGGATGCGATGGCTGCGCCATCATCCTGTCCTGCGTCCTCGGAAAACGGC
AGTCGATTGGAGTCCCGCCGGATCTTTGGCGACATTACCACCAACAGACT
GTGGACCTTTCGGGTGCTGATGAACCAGGATCTGGCGCCCAACGAGCAGT
TGGCCATAGTGGGTAATTGCGAGGCGCTGGGCAACTGGCAGCACTCGGGA
GCGGCTATTTTGTCCAAAAATGAGGAGGACAATGAGTATAGTAATCTGTG
GACAGGAGAGATCTATATTCCGCGTCACTGTGACACGGAATATCGCTATA
TGGTCTGTGCCGTCGATCCCGGCACGGAGCAGCTGATTGTCCGCCGTTGG
GAAACGCAATTACAGCCCCGAATAGTCAAGGAGTTGGATGAGCAGCCTGC
CAAGAATCAGAGTGACATATTTGGCTCGTTCAATGGCCAGGAGAAGGTGG
ATCGGGGCTGGCTGACCAAGGAGACTCTGGTGCAGCTAAAGTTCTTTTAT
GCTCCGTTCACGTTTAAGCAGCGCATGAAACGTAGGCATATCCAGGTCAA
AGTGACGCCCATGAACCTGAGTATTCCCAGTGCCGGCTGTGATACCATGC
TGCCCTCGTCTCCCATGGAGGATTCCTTGTCGAACGACACTCATGATACC
AAGGAGAACGGCGGTGAATCCTCCACAGCCTTTGCCTTTAGCGAGGTCGT
CACCTTGAGTGCCGACGAGTGCGAAATCAGAAGTCAAGAGCAGTTCGGCA
CCGGCTGTGGACCCACCGATTTGGTTATATTCCATCTGACCGTTGGAGAC
TTCGAGAACACGGCCTACCTGATTGATTTGTACAGCTACAGCTCCCGGGT
GGCCAGGAAA

BS09643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2818-PA 2124 CG2818-RA 1..889 17..905 4445 100 Plus
CG2818-PB 1566 CG2818-RB 1..331 575..905 1655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2818-RA 2804 CG2818-RA 379..1267 17..905 4445 100 Plus
CG2818-RB 2228 CG2818-RB 202..691 416..905 2450 100 Plus
CG2818-RB 2228 CG2818-RB 1..109 307..415 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3714641..3715136 410..905 2480 100 Plus
2L 23513712 2L 3714093..3714491 17..415 1995 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:50:39 has no hits.

BS09643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:06 Download gff for BS09643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2818-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:13 Download gff for BS09643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2818-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:46:02 Download gff for BS09643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2818-RA 379..1269 17..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:45 Download gff for BS09643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2818-RA 379..1269 17..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:45 Download gff for BS09643.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3714087..3714491 9..415 99 -> Plus
2L 3714647..3715138 416..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:46:02 Download gff for BS09643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3714087..3714491 9..415 99 -> Plus
arm_2L 3714647..3715138 416..907 99   Plus

BS09643.complete Sequence

2156 bp assembled on 2008-08-14

GenBank Submission: FJ636459

> BS09643.complete
GAAGTTATCAGTCGACATGCACAACTGGCTGGCCTCACATAACGGCGATG
AGGATGCGATGGCTGCGCCATCATCCTGTCCTGCGTCCTCGGAAAACGGC
AGTCGATTGGAGTCCCGCCGGATCTTTGGCGACATTACCACCAACAGACT
GTGGACCTTTCGGGTGCTGATGAACCAGGATCTGGCGCCCAACGAGCAGT
TGGCCATAGTGGGTAATTGCGAGGCGCTGGGCAACTGGCAGCACTCGGGA
GCGGCTATTTTGTCCAAAAATGAGGAGGACAATGAGTATAGTAATCTGTG
GACAGGAGAGATCTATATTCCGCGTCACTGTGACACGGAATATCGCTATA
TGGTCTGTGCCGTCGATCCCGGCACGGAGCAGCTGATTGTCCGCCGTTGG
GAAACGCAATTACAGCCCCGAATAGTCAAGGAGTTGGATGAGCAGCCTGC
CAAGAATCAGAGTGACATATTTGGCTCGTTCAATGGCCAGGAGAAGGTGG
ATCGGGGCTGGCTGACCAAGGAGACTCTGGTGCAGCTAAAGTTCTTTTAT
GCTCCGTTCACGTTTAAGCAGCGCATGAAACGTAGGCATATCCAGGTCAA
AGTGACGCCCATGAACCTGAGTATTCCCAGTGCCGGCTGTGATACCATGC
TGCCCTCGTCTCCCATGGAGGATTCCTTGTCGAACGACACTCATGATACC
AAGGAGAACGGCGGTGAATCCTCCACAGCCTTTGCCTTTAGCGAGGTCGT
CACCTTGAGTGCCGACGAGTGCGAAATCAGAAGTCAAGAGCAGTTCGGCA
CCGGCTGTGGACCCACCGATTTGGTTATATTCCATCTGACCGTTGGAGAC
TTCGAGAACACGGCCTACCTGATTGATTTGTACAGCTACAGCTCCCGGGT
GGCCAAGGAAGATGGTCCACCGAACCACTTGGGCTATCATTATGTGCTGC
CCAATCTTTTTAAACGTTCTGAAGGCAACTTGGAGCTGCCCATAACCTGT
GCCAAGGGCCATCGACCTCTGGGAATGATGCGTCTTGGTTATCTTATCGT
GAAGCCCTCATCGCTGTGTGCTCTAATGGATATGAGTGTCAGCTATGCCC
GATACTGGAACAGCAAGTGGACGGGACTGGATGTGGGCCATCGTGGTTCC
GGAACTAGTTTCAAGGCCAAGGACGCTGTTATTCGGGAGAATACCATTAC
TTCTTTGAAGAATGCCGCAGAGCATGGTGCCGACATGGTGGAGTTCGATG
TCCAACTTAGCAAGGATCTGGTGCCAGTGGTGTATCACGATTTCATGATC
TATGTTTCACTAAAGTCGAAGTGCAGTCTGCAGGAGCACGATTTCCTCGC
TCTACCGATGAGGGAGTTGTCCCTGGAGCAGTTGAAGAAATTGAAAGTCT
ATCACATTGCTGAGGGTCTGTCCAGGGAGACGCGTTCGTTTCACAACGAT
GATTGTTTAGAGCACCAGCCGTTTCCGCAGCTATGCGATGTCCTGGATGC
CCTAGATGTCCATGTGGGTTTCAACATAGAAATTAAGTGGTCTCAGAGGC
TAGAGGACGGCAAAATGGAGGAGGAATTCGAGCATGTGGTGGACAGAAAT
CTCTATATCGATTGCATATTGGATGTCATCCTACGAAAGGCAGGGAATCG
CAGGATAGTACTGAGTTGTTTTGATCCAGATATCTGCACTATTCTGAGAT
TCAAGCAAAATCGATACCCTGTCATGTTCCTAACTCTCGGCAGGACGACG
AAATACCAGAAGTATATGGACCCCAGGGGCAACTCCATGGAGCTGGCCGT
GTGGCACGCGGTGGCCATGGAGTTCCTGGGTGTTGTGGCACACACGGAGG
ACCTGCTGCGAGATCCCAGTCAGGTGAATCTGGCCAAGGAGCGTGGATTG
GTGCTGTTTTGTTGGGGCGACGATAACAACTCCAAGGATACCATCAAGCT
GTTAAAGGAACTCGGCCTGCACGCCATCATCTACGACAAAATGGATGTCC
TGACCACCAAGGAGGTCAAGCAAAGTGTGTTCCACCTTCAGGCCAAGGAC
AGCCAAAAGGAACTGCTCAAGTTGCAGGCCCTGGAAATGGGGCATGTGTG
GCACACCTCTGCCGACGGAAACGAGGAGCAGCAGGCATAGAAGCTTTCTA
GACCAT

BS09643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2818-RA 2124 CG2818-PA 1..2124 17..2140 10620 100 Plus
CG2818-RB 1566 CG2818-PB 1..1566 575..2140 7830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2818-RA 2804 CG2818-RA 379..2504 17..2142 10630 100 Plus
CG2818-RB 2228 CG2818-RB 202..1928 416..2142 8635 100 Plus
CG2818-RB 2228 CG2818-RB 1..109 307..415 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3714641..3716106 410..1875 7330 100 Plus
2L 23513712 2L 3714093..3714491 17..415 1995 100 Plus
2L 23513712 2L 3716155..3716303 1872..2020 745 100 Plus
2L 23513712 2L 3716387..3716510 2019..2142 620 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:52:06 has no hits.

BS09643.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:54 Download gff for BS09643.complete
Subject Subject Range Query Range Percent Splice Strand
CG2818-RA 365..2493 17..2147 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:49 Download gff for BS09643.complete
Subject Subject Range Query Range Percent Splice Strand
CG2818-RA 379..2502 17..2140 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:43 Download gff for BS09643.complete
Subject Subject Range Query Range Percent Splice Strand
CG2818-RA 365..2488 17..2140 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:18 Download gff for BS09643.complete
Subject Subject Range Query Range Percent Splice Strand
CG2818-RA 379..2502 17..2140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:18 Download gff for BS09643.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3716389..3716508 2021..2140 100   Plus
2L 3716157..3716303 1874..2020 100 -> Plus
2L 3714093..3714491 17..415 100 -> Plus
2L 3714647..3716104 416..1873 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:49 Download gff for BS09643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3716157..3716303 1874..2020 100 -> Plus
arm_2L 3716389..3716508 2021..2140 100   Plus
arm_2L 3714093..3714491 17..415 100 -> Plus
arm_2L 3714647..3716104 416..1873 100 -> Plus

BS09643.pep Sequence

Translation from 16 to 2139

> BS09643.pep
MHNWLASHNGDEDAMAAPSSCPASSENGSRLESRRIFGDITTNRLWTFRV
LMNQDLAPNEQLAIVGNCEALGNWQHSGAAILSKNEEDNEYSNLWTGEIY
IPRHCDTEYRYMVCAVDPGTEQLIVRRWETQLQPRIVKELDEQPAKNQSD
IFGSFNGQEKVDRGWLTKETLVQLKFFYAPFTFKQRMKRRHIQVKVTPMN
LSIPSAGCDTMLPSSPMEDSLSNDTHDTKENGGESSTAFAFSEVVTLSAD
ECEIRSQEQFGTGCGPTDLVIFHLTVGDFENTAYLIDLYSYSSRVAKEDG
PPNHLGYHYVLPNLFKRSEGNLELPITCAKGHRPLGMMRLGYLIVKPSSL
CALMDMSVSYARYWNSKWTGLDVGHRGSGTSFKAKDAVIRENTITSLKNA
AEHGADMVEFDVQLSKDLVPVVYHDFMIYVSLKSKCSLQEHDFLALPMRE
LSLEQLKKLKVYHIAEGLSRETRSFHNDDCLEHQPFPQLCDVLDALDVHV
GFNIEIKWSQRLEDGKMEEEFEHVVDRNLYIDCILDVILRKAGNRRIVLS
CFDPDICTILRFKQNRYPVMFLTLGRTTKYQKYMDPRGNSMELAVWHAVA
MEFLGVVAHTEDLLRDPSQVNLAKERGLVLFCWGDDNNSKDTIKLLKELG
LHAIIYDKMDVLTTKEVKQSVFHLQAKDSQKELLKLQALEMGHVWHTSAD
GNEEQQA*

BS09643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2818-PA 707 CG2818-PA 1..707 1..707 3750 100 Plus
CG2818-PB 521 CG2818-PB 1..521 187..707 2745 100 Plus
CG3942-PA 739 CG3942-PA 1..687 1..662 974 35.6 Plus
CG18135-PB 636 CG18135-PB 19..621 28..672 801 33.1 Plus
CG18135-PE 649 CG18135-PE 32..634 28..672 801 33.1 Plus