Clone Sequence Records
BS09643.3prime Sequence
886 bp (862 high quality bases) assembled on 2006-04-19
> BS09643.3prime
ATGGTCTAGAAAGCTTCTATGCCTGCTGCTCCTCGTTTCCGTCGGCAGAG
GTGTGCCACACATGCCCCATTTCCAGGGCCTGCAACTTGAGCAGTTCCTT
TTGGCTGTCCTTGGCCTGAAGGTGGAACACACTTTGCTTGACCTCCTTGG
TGGTCAGGACATCCATTTTGTCGTAGATGATGGCGTGCAGGCCGAGTTCC
TTTAACAGCTTGATGGTATCCTTGGAGTTGTTATCGTCGCCCCAACAAAA
CAGCACCAATCCACGCTCCTTGGCCAGATTCACCTGACTGGGATCTCGCA
GCAGGTCCTCCGTGTGTGCCACAACACCCAGGAACTCCATGGCCACCGCG
TGCCACACGGCCAGCTCCATGGAGTTGCCCCTGGGGTCCATATACTTCTG
GTATTTCGTCGTCCTGCCGAGAGTTAGGAACATGACAGGGTATCGATTTT
GCTTGAATCTCAGAATAGTGCAGATATCTGGATCAAAACAACTCAGTACT
ATCCTGCGATTCCCTGCCTTTCGTAGGATGACATCCAATATGCAATCGAT
ATAGAGATTTCTGTCCACCACATGCTCGAATTCCTCCTCCATTTTGCCGT
CCTCTAGCCTCTGAGACCACTTAATTTCTATGTTGAAACCCACATGGACA
TCTAGGGCATCCAGGACATCGCATAGCTGCGGAAACGGCTGGTGCTCTAA
ACAATCATCGTTGTGAAACGAACGCGTCTCCCTGGACAGACCCTCAGCAA
TGTGATAGACTTTCAATTTCTTCAACTGCTCCAGGGACAACTCCCTCATC
GGTAGAGCGAGGAAATCGTGCTCCTGCAGACTGCACTTCGACTTTAGTGA
AACATAGATCATGAAATCGTGATACACCACTGGCAC
BS09643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2818-PA | 2124 | CG2818-RA | 1255..2124 | 886..17 | 4350 | 100 | Minus |
CG2818-PB | 1566 | CG2818-RB | 697..1566 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2818-RB | 2228 | CG2818-RB | 1057..1928 | 886..15 | 4360 | 100 | Minus |
CG2818-RA | 2804 | CG2818-RA | 1633..2504 | 886..15 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3715502..3716106 | 886..282 | 3025 | 100 | Minus |
2L | 23513712 | 2L | 3716155..3716303 | 285..137 | 745 | 100 | Minus |
2L | 23513712 | 2L | 3716387..3716510 | 138..15 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:29:04 has no hits.
BS09643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:05 Download gff for
BS09643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-PA | 1255..2124 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:12 Download gff for
BS09643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-PB | 697..1566 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:11:57 Download gff for
BS09643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-RA | 1633..2507 | 10..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:34 Download gff for
BS09643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-RA | 1633..2507 | 10..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:34 Download gff for
BS09643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3715502..3716104 | 284..886 | 100 | -> | Minus |
2L | 3716157..3716303 | 137..283 | 100 | -> | Minus |
2L | 3716389..3716513 | 10..136 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:11:57 Download gff for
BS09643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3715502..3716104 | 284..886 | 100 | -> | Minus |
arm_2L | 3716157..3716303 | 137..283 | 100 | -> | Minus |
arm_2L | 3716389..3716513 | 10..136 | 98 | | Minus |
BS09643.5prime Sequence
910 bp (858 high quality bases) assembled on 2006-04-19
> BS09643.5prime
GAAGTTATCAGTCGACATGCACAACTGGCTGGCCTCACATAACGGCGATG
AGGATGCGATGGCTGCGCCATCATCCTGTCCTGCGTCCTCGGAAAACGGC
AGTCGATTGGAGTCCCGCCGGATCTTTGGCGACATTACCACCAACAGACT
GTGGACCTTTCGGGTGCTGATGAACCAGGATCTGGCGCCCAACGAGCAGT
TGGCCATAGTGGGTAATTGCGAGGCGCTGGGCAACTGGCAGCACTCGGGA
GCGGCTATTTTGTCCAAAAATGAGGAGGACAATGAGTATAGTAATCTGTG
GACAGGAGAGATCTATATTCCGCGTCACTGTGACACGGAATATCGCTATA
TGGTCTGTGCCGTCGATCCCGGCACGGAGCAGCTGATTGTCCGCCGTTGG
GAAACGCAATTACAGCCCCGAATAGTCAAGGAGTTGGATGAGCAGCCTGC
CAAGAATCAGAGTGACATATTTGGCTCGTTCAATGGCCAGGAGAAGGTGG
ATCGGGGCTGGCTGACCAAGGAGACTCTGGTGCAGCTAAAGTTCTTTTAT
GCTCCGTTCACGTTTAAGCAGCGCATGAAACGTAGGCATATCCAGGTCAA
AGTGACGCCCATGAACCTGAGTATTCCCAGTGCCGGCTGTGATACCATGC
TGCCCTCGTCTCCCATGGAGGATTCCTTGTCGAACGACACTCATGATACC
AAGGAGAACGGCGGTGAATCCTCCACAGCCTTTGCCTTTAGCGAGGTCGT
CACCTTGAGTGCCGACGAGTGCGAAATCAGAAGTCAAGAGCAGTTCGGCA
CCGGCTGTGGACCCACCGATTTGGTTATATTCCATCTGACCGTTGGAGAC
TTCGAGAACACGGCCTACCTGATTGATTTGTACAGCTACAGCTCCCGGGT
GGCCAGGAAA
BS09643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2818-PA | 2124 | CG2818-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
CG2818-PB | 1566 | CG2818-RB | 1..331 | 575..905 | 1655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2818-RA | 2804 | CG2818-RA | 379..1267 | 17..905 | 4445 | 100 | Plus |
CG2818-RB | 2228 | CG2818-RB | 202..691 | 416..905 | 2450 | 100 | Plus |
CG2818-RB | 2228 | CG2818-RB | 1..109 | 307..415 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3714641..3715136 | 410..905 | 2480 | 100 | Plus |
2L | 23513712 | 2L | 3714093..3714491 | 17..415 | 1995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:50:39 has no hits.
BS09643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:06 Download gff for
BS09643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:13 Download gff for
BS09643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:46:02 Download gff for
BS09643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-RA | 379..1269 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:45 Download gff for
BS09643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-RA | 379..1269 | 17..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:45 Download gff for
BS09643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3714087..3714491 | 9..415 | 99 | -> | Plus |
2L | 3714647..3715138 | 416..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:46:02 Download gff for
BS09643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3714087..3714491 | 9..415 | 99 | -> | Plus |
arm_2L | 3714647..3715138 | 416..907 | 99 | | Plus |
BS09643.complete Sequence
2156 bp assembled on 2008-08-14
GenBank Submission: FJ636459
> BS09643.complete
GAAGTTATCAGTCGACATGCACAACTGGCTGGCCTCACATAACGGCGATG
AGGATGCGATGGCTGCGCCATCATCCTGTCCTGCGTCCTCGGAAAACGGC
AGTCGATTGGAGTCCCGCCGGATCTTTGGCGACATTACCACCAACAGACT
GTGGACCTTTCGGGTGCTGATGAACCAGGATCTGGCGCCCAACGAGCAGT
TGGCCATAGTGGGTAATTGCGAGGCGCTGGGCAACTGGCAGCACTCGGGA
GCGGCTATTTTGTCCAAAAATGAGGAGGACAATGAGTATAGTAATCTGTG
GACAGGAGAGATCTATATTCCGCGTCACTGTGACACGGAATATCGCTATA
TGGTCTGTGCCGTCGATCCCGGCACGGAGCAGCTGATTGTCCGCCGTTGG
GAAACGCAATTACAGCCCCGAATAGTCAAGGAGTTGGATGAGCAGCCTGC
CAAGAATCAGAGTGACATATTTGGCTCGTTCAATGGCCAGGAGAAGGTGG
ATCGGGGCTGGCTGACCAAGGAGACTCTGGTGCAGCTAAAGTTCTTTTAT
GCTCCGTTCACGTTTAAGCAGCGCATGAAACGTAGGCATATCCAGGTCAA
AGTGACGCCCATGAACCTGAGTATTCCCAGTGCCGGCTGTGATACCATGC
TGCCCTCGTCTCCCATGGAGGATTCCTTGTCGAACGACACTCATGATACC
AAGGAGAACGGCGGTGAATCCTCCACAGCCTTTGCCTTTAGCGAGGTCGT
CACCTTGAGTGCCGACGAGTGCGAAATCAGAAGTCAAGAGCAGTTCGGCA
CCGGCTGTGGACCCACCGATTTGGTTATATTCCATCTGACCGTTGGAGAC
TTCGAGAACACGGCCTACCTGATTGATTTGTACAGCTACAGCTCCCGGGT
GGCCAAGGAAGATGGTCCACCGAACCACTTGGGCTATCATTATGTGCTGC
CCAATCTTTTTAAACGTTCTGAAGGCAACTTGGAGCTGCCCATAACCTGT
GCCAAGGGCCATCGACCTCTGGGAATGATGCGTCTTGGTTATCTTATCGT
GAAGCCCTCATCGCTGTGTGCTCTAATGGATATGAGTGTCAGCTATGCCC
GATACTGGAACAGCAAGTGGACGGGACTGGATGTGGGCCATCGTGGTTCC
GGAACTAGTTTCAAGGCCAAGGACGCTGTTATTCGGGAGAATACCATTAC
TTCTTTGAAGAATGCCGCAGAGCATGGTGCCGACATGGTGGAGTTCGATG
TCCAACTTAGCAAGGATCTGGTGCCAGTGGTGTATCACGATTTCATGATC
TATGTTTCACTAAAGTCGAAGTGCAGTCTGCAGGAGCACGATTTCCTCGC
TCTACCGATGAGGGAGTTGTCCCTGGAGCAGTTGAAGAAATTGAAAGTCT
ATCACATTGCTGAGGGTCTGTCCAGGGAGACGCGTTCGTTTCACAACGAT
GATTGTTTAGAGCACCAGCCGTTTCCGCAGCTATGCGATGTCCTGGATGC
CCTAGATGTCCATGTGGGTTTCAACATAGAAATTAAGTGGTCTCAGAGGC
TAGAGGACGGCAAAATGGAGGAGGAATTCGAGCATGTGGTGGACAGAAAT
CTCTATATCGATTGCATATTGGATGTCATCCTACGAAAGGCAGGGAATCG
CAGGATAGTACTGAGTTGTTTTGATCCAGATATCTGCACTATTCTGAGAT
TCAAGCAAAATCGATACCCTGTCATGTTCCTAACTCTCGGCAGGACGACG
AAATACCAGAAGTATATGGACCCCAGGGGCAACTCCATGGAGCTGGCCGT
GTGGCACGCGGTGGCCATGGAGTTCCTGGGTGTTGTGGCACACACGGAGG
ACCTGCTGCGAGATCCCAGTCAGGTGAATCTGGCCAAGGAGCGTGGATTG
GTGCTGTTTTGTTGGGGCGACGATAACAACTCCAAGGATACCATCAAGCT
GTTAAAGGAACTCGGCCTGCACGCCATCATCTACGACAAAATGGATGTCC
TGACCACCAAGGAGGTCAAGCAAAGTGTGTTCCACCTTCAGGCCAAGGAC
AGCCAAAAGGAACTGCTCAAGTTGCAGGCCCTGGAAATGGGGCATGTGTG
GCACACCTCTGCCGACGGAAACGAGGAGCAGCAGGCATAGAAGCTTTCTA
GACCAT
BS09643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2818-RA | 2124 | CG2818-PA | 1..2124 | 17..2140 | 10620 | 100 | Plus |
CG2818-RB | 1566 | CG2818-PB | 1..1566 | 575..2140 | 7830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2818-RA | 2804 | CG2818-RA | 379..2504 | 17..2142 | 10630 | 100 | Plus |
CG2818-RB | 2228 | CG2818-RB | 202..1928 | 416..2142 | 8635 | 100 | Plus |
CG2818-RB | 2228 | CG2818-RB | 1..109 | 307..415 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3714641..3716106 | 410..1875 | 7330 | 100 | Plus |
2L | 23513712 | 2L | 3714093..3714491 | 17..415 | 1995 | 100 | Plus |
2L | 23513712 | 2L | 3716155..3716303 | 1872..2020 | 745 | 100 | Plus |
2L | 23513712 | 2L | 3716387..3716510 | 2019..2142 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:52:06 has no hits.
BS09643.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:54 Download gff for
BS09643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-RA | 365..2493 | 17..2147 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:49 Download gff for
BS09643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-RA | 379..2502 | 17..2140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:43 Download gff for
BS09643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-RA | 365..2488 | 17..2140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:18 Download gff for
BS09643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2818-RA | 379..2502 | 17..2140 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:18 Download gff for
BS09643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3716389..3716508 | 2021..2140 | 100 | | Plus |
2L | 3716157..3716303 | 1874..2020 | 100 | -> | Plus |
2L | 3714093..3714491 | 17..415 | 100 | -> | Plus |
2L | 3714647..3716104 | 416..1873 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:49 Download gff for
BS09643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3716157..3716303 | 1874..2020 | 100 | -> | Plus |
arm_2L | 3716389..3716508 | 2021..2140 | 100 | | Plus |
arm_2L | 3714093..3714491 | 17..415 | 100 | -> | Plus |
arm_2L | 3714647..3716104 | 416..1873 | 100 | -> | Plus |
BS09643.pep Sequence
Translation from 16 to 2139
> BS09643.pep
MHNWLASHNGDEDAMAAPSSCPASSENGSRLESRRIFGDITTNRLWTFRV
LMNQDLAPNEQLAIVGNCEALGNWQHSGAAILSKNEEDNEYSNLWTGEIY
IPRHCDTEYRYMVCAVDPGTEQLIVRRWETQLQPRIVKELDEQPAKNQSD
IFGSFNGQEKVDRGWLTKETLVQLKFFYAPFTFKQRMKRRHIQVKVTPMN
LSIPSAGCDTMLPSSPMEDSLSNDTHDTKENGGESSTAFAFSEVVTLSAD
ECEIRSQEQFGTGCGPTDLVIFHLTVGDFENTAYLIDLYSYSSRVAKEDG
PPNHLGYHYVLPNLFKRSEGNLELPITCAKGHRPLGMMRLGYLIVKPSSL
CALMDMSVSYARYWNSKWTGLDVGHRGSGTSFKAKDAVIRENTITSLKNA
AEHGADMVEFDVQLSKDLVPVVYHDFMIYVSLKSKCSLQEHDFLALPMRE
LSLEQLKKLKVYHIAEGLSRETRSFHNDDCLEHQPFPQLCDVLDALDVHV
GFNIEIKWSQRLEDGKMEEEFEHVVDRNLYIDCILDVILRKAGNRRIVLS
CFDPDICTILRFKQNRYPVMFLTLGRTTKYQKYMDPRGNSMELAVWHAVA
MEFLGVVAHTEDLLRDPSQVNLAKERGLVLFCWGDDNNSKDTIKLLKELG
LHAIIYDKMDVLTTKEVKQSVFHLQAKDSQKELLKLQALEMGHVWHTSAD
GNEEQQA*
BS09643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2818-PA | 707 | CG2818-PA | 1..707 | 1..707 | 3750 | 100 | Plus |
CG2818-PB | 521 | CG2818-PB | 1..521 | 187..707 | 2745 | 100 | Plus |
CG3942-PA | 739 | CG3942-PA | 1..687 | 1..662 | 974 | 35.6 | Plus |
CG18135-PB | 636 | CG18135-PB | 19..621 | 28..672 | 801 | 33.1 | Plus |
CG18135-PE | 649 | CG18135-PE | 32..634 | 28..672 | 801 | 33.1 | Plus |