Clone Sequence Records
BS09652.complete Sequence
1721 bp assembled on 2009-12-07
GenBank Submission: KX804447
> BS09652.complete
GAAGTTATCAGTCGACATGTATCACCTGAAGAGTCTGGCCCGCCAGGGCG
CCCGCCGCCAGCAGGAGCTGGCCACGCTGGCCAAGGCACTGCCCACCGCT
GTGATGCAGTCGAGCCGCGGCTATGCCACCGAGCACCAGATTCCCGACCG
CCTCAAGGATGTGCCCACCGCCAAGGATCCGCGCTTCTTCGACATGGTCG
AGTATTTCTTCCATCGCGGCTGCCAAATCGCCGAGGAATCGCTGGTGGAC
GACATGAAGGGCAAGCTGACCCGCGACGAGAAGAAGCAGAAGGTGAAGGG
CATCCTCATGCTGATGCAGCCCTGCGACCACATCATCGAGATCGCCTTCC
CCCTGCGCCGCGATGCCGGCAACTACGAGATGATCACCGGCTACCGCGCC
CAGCACAGCACCCACAAGACGCCCACCAAGGGAGGCATCCGTTTCTCGTT
GGATGTGTCACGCGATGAGGTCAAAGCCCTGTCCGCCCTGATGACCTTCA
AGTGCGCCTGCGTGGATGTGCCATTCGGCGGAGCCAAGGCCGGTCTGAAG
ATCAACCCTAAGGAGTACTCCGAGCACGAGCTGGAGAAGATCACCCGTCG
CTTCACCCTTGAGTTGGCCAAGAAGGGCTTCATTGGACCCGGTGTCGATG
TGCCCGCCCCCGACATGGGAACCGGTGAGCGCGAGATGTCCTGGATTGCC
GATACTTATGCCAAGACCATCGGTCACCTGGACATCAATGCTCATGCCTG
TGTCACCGGCAAGCCCATCAACCAGGGCGGTATCCACGGACGCGTCTCGG
CCACCGGTCGCGGTGTCTTCCACGGCCTGGAGAACTTCATCAACGAGGCC
AACTACATGAGCCAGATCGGCACCACTCCCGGCTGGGGCGGCAAGACCTT
CATCGTCCAGGGCTTCGGTAACGTGGGCCTGCACACCACTCGCTATCTGA
CCCGCGCCGGAGCCACCTGCATCGGTGTCATTGAGCACGACGGCACTCTG
TACAACCCGGAGGGCATTGACCCTAAGCTGCTGGAGGACTACAAGAACGA
GCACGGCACCATTGTGGGCTACCAGAACGCCAAGCCCTACGAGGGCGAGA
ACCTCATGTTCGAGAAGTGCGACATCTTCATTCCCGCTGCCGTCGAGAAG
GTCATCACCAGCGAGAATGCCAACCGCATTCAAGCTAAGATCATTGCCGA
GGCTGCCAACGGCCCCACCACCCCCGCTGCCGACAAGATCCTCATCGATC
GCAACATCCTGGTCATTCCCGATCTGTACATCAACGCCGGTGGTGTCACC
GTCTCCTTCTTCGAGTGGCTGAAGAACCTGAACCACGTCTCGTACGGTCG
CCTGACCTTCAAGTATGAGCGCGAGTCCAACTACCATCTGCTTGCCTCAG
TCCAACAGTCAATTGAAAGAATCATTAATGACGAATCCGTTCAAGAGTCC
CTGGAGCGTCGCTTCGGCCGTGTGGGCGGTCGCATCCCCGTGACCCCCTC
CGAGTCGTTCCAGAAGCGCATCTCCGGCGCCTCCGAGAAGGATATCGTGC
ACTCCGGCCTGGACTACACCATGGAGCGCTCCGCCCGCGCCATCATGAAG
ACAGCCATGAAGTACAACCTGGGCCTGGACCTCAGAACCGCTGCCTACGT
CAACTCCATTGAGAAGATCTTCACCACATACCGCGATGCCGGCCTGGCCT
TCTAAAAGCTTTCAAGACCAT
BS09652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdh-RA | 1689 | CG5320-PA | 1..1689 | 17..1705 | 8445 | 100 | Plus |
Gdh-RF | 1650 | CG5320-PF | 1..1394 | 17..1410 | 6895 | 99.6 | Plus |
Gdh-RB | 1215 | CG5320-PB | 1..1215 | 491..1705 | 6075 | 100 | Plus |
Gdh-RF | 1650 | CG5320-PF | 1378..1650 | 1433..1705 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdh-RA | 2195 | CG5320-RA | 90..1779 | 16..1705 | 8450 | 100 | Plus |
Gdh-RF | 2156 | CG5320-RF | 90..1484 | 16..1410 | 6900 | 99.6 | Plus |
Gdh-RB | 1835 | CG5320-RB | 147..1419 | 433..1705 | 6365 | 100 | Plus |
Gdh-RF | 2156 | CG5320-RF | 1468..1740 | 1433..1705 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23938120..23938557 | 870..433 | 2190 | 100 | Minus |
3R | 32079331 | 3R | 23942591..23943012 | 437..16 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 23937732..23938052 | 1189..869 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 23936374..23936646 | 1705..1433 | 1365 | 100 | Minus |
3R | 32079331 | 3R | 23937423..23937629 | 1394..1188 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 23936981..23937020 | 1433..1394 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:29 has no hits.
BS09652.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:01 Download gff for
BS09652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdh-RA | 88..1774 | 17..1703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:05 Download gff for
BS09652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdh-RA | 91..1777 | 17..1703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:42 Download gff for
BS09652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdh-RA | 88..1774 | 17..1703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:13 Download gff for
BS09652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdh-RA | 91..1777 | 17..1703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:13 Download gff for
BS09652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23936376..23936645 | 1434..1703 | 100 | <- | Minus |
3R | 23936981..23937019 | 1395..1433 | 100 | <- | Minus |
3R | 23937423..23937627 | 1190..1394 | 100 | <- | Minus |
3R | 23937732..23938051 | 870..1189 | 100 | <- | Minus |
3R | 23938121..23938555 | 435..869 | 100 | <- | Minus |
3R | 23942594..23943011 | 17..434 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:05 Download gff for
BS09652.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19762098..19762367 | 1434..1703 | 100 | <- | Minus |
arm_3R | 19762703..19762741 | 1395..1433 | 100 | <- | Minus |
arm_3R | 19763145..19763349 | 1190..1394 | 100 | <- | Minus |
arm_3R | 19763454..19763773 | 870..1189 | 100 | <- | Minus |
arm_3R | 19763843..19764277 | 435..869 | 100 | <- | Minus |
arm_3R | 19768316..19768733 | 17..434 | 100 | | Minus |
BS09652.3prime Sequence
890 bp (792 high quality bases) assembled on 2006-04-19
> BS09652.3prime
ATGGTCTTGAAAGCTTTTAGAAGGCCAGGCCGGCATCGCGGTATGTGGTG
AAGATCTTCTCAATGGAGTTGACGTAGGCAGCGGTTCTGAGGTCCAGGCC
CAGGTTGTACTTCATGGCTGTCTTCATGATGGCGCGGGCGGAGCGCTCCA
TGGTGTAGTCCAGGCCGGAGTGCACGATATCCTTCTCGGAGGCGCCGGAG
ATGCGCTTCTGGAACGACTCGGAGGGGGTCACGGGGATGCGACCGCCCAC
ACGGCCGAAGCGACGCTCCAGGGACTCTTGAACGGATTCGTCATTAATGA
TTCTTTCAATTGACTGTTGGACTGAGGCAAGCAGATGGTAGTTGGACTCG
CGCTCATACTTGAAGGTCAGGCGACCGTACGAGACGTGGTTCAGGTTCTT
CAGCCACTCGAAGAAGGAGACGGTGACACCACCGGCGTTGATGTACAGAT
CGGGAATGACCAGGATGTTGCGATCGATGAGGATCTTGTCGGCAGCGGGG
GTGGTGGGGCCGTTGGCAGCCTCGGCAATGATCTTAGCTTGAATGCGGTT
GGCATTCTCGCTGGTGATGACCTTCTCGACGGCAGCGGGAATGAAGATGT
CGCACTTCTCGAACATGAGGTTCTCGCCCTCGTAGGGCTTGGCGTTCTGG
TAGCCCACAATGGTGCCGTGCTCGTTCTTGTAGTCCTCCAGCAGCTTAGG
GTCAATGCCCTCCGGGTTGTACAGAGTGCCGTCGTGCTCAATGACACCGA
TGCAGGTGGCTCCGGCGCGGGTCAGATAGCGAGTGGTGTGCAGGCCCACG
TTACCGAAGCCCTGGACGATGAAGGTCTTGCCGCCCCAGCCGGGAGTGGT
GCCGATCTGGCTCATGTAGTTGGCCTCGTTGATGAAGTTC
BS09652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5320-PA | 1689 | Gdh-RA | 816..1689 | 890..17 | 4370 | 100 | Minus |
CG5320-PB | 1215 | Gdh-RB | 342..1215 | 890..17 | 4370 | 100 | Minus |
CG5320-PE | 1002 | Gdh-RE | 168..730 | 890..328 | 2815 | 100 | Minus |
CG5320-PF | 1650 | Gdh-RF | 816..1378 | 890..328 | 2815 | 100 | Minus |
CG5320-PE | 1002 | Gdh-RE | 730..1002 | 289..17 | 1365 | 100 | Minus |
CG5320-PF | 1650 | Gdh-RF | 1378..1650 | 289..17 | 1365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdh-RB | 1835 | CG5320-RB | 546..1419 | 890..17 | 4370 | 100 | Minus |
Gdh-RA | 2195 | CG5320-RA | 906..1779 | 890..17 | 4370 | 100 | Minus |
Gdh-RD | 1796 | CG5320-RD | 546..1124 | 890..312 | 2820 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23937732..23938052 | 533..853 | 1605 | 100 | Plus |
3R | 32079331 | 3R | 23936374..23936646 | 17..289 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 23937423..23937629 | 328..534 | 1035 | 100 | Plus |
3R | 32079331 | 3R | 23936981..23937020 | 289..328 | 200 | 100 | Plus |
3R | 32079331 | 3R | 23938120..23938158 | 852..890 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:42:07 has no hits.
BS09652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:15 Download gff for
BS09652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5320-PA | 816..1689 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:28 Download gff for
BS09652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5320-PB | 342..1215 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:30:19 Download gff for
BS09652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdh-RA | 906..1781 | 13..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:53 Download gff for
BS09652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdh-RA | 906..1781 | 13..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:53 Download gff for
BS09652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23936372..23936645 | 13..288 | 99 | <- | Plus |
3R | 23936981..23937019 | 289..327 | 100 | <- | Plus |
3R | 23937423..23937627 | 328..532 | 100 | <- | Plus |
3R | 23937732..23938051 | 533..852 | 100 | <- | Plus |
3R | 23938121..23938158 | 853..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:30:19 Download gff for
BS09652.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19762094..19762367 | 13..288 | 99 | <- | Plus |
arm_3R | 19762703..19762741 | 289..327 | 100 | <- | Plus |
arm_3R | 19763145..19763349 | 328..532 | 100 | <- | Plus |
arm_3R | 19763454..19763773 | 533..852 | 100 | <- | Plus |
arm_3R | 19763843..19763880 | 853..890 | 100 | | Plus |
BS09652.5prime Sequence
888 bp (796 high quality bases) assembled on 2006-04-19
> BS09652.5prime
GAAGTTATCAGTCGACATGTATCACCTGAAGAGTCTGGCCCGCCAGGGCG
CCCGCCGCCAGCAGGAGCTGGCCACGCTGGCCAAGGCACTGCCCACCGCT
GTGATGCAGTCGAGCCGCGGCTATGCCACCGAGCACCAGATTCCCGACCG
CCTCAAGGATGTGCCCACCGCCAAGGATCCGCGCTTCTTCGACATGGTCG
AGTATTTCTTCCATCGCGGCTGCCAAATCGCCGAGGAATCGCTGGTGGAC
GACATGAAGGGCAAGCTGACCCGCGACGAGAAGAAGCAGAAGGTGAAGGG
CATCCTCATGCTGATGCAGCCCTGCGACCACATCATCGAGATCGCCTTCC
CCCTGCGCCGCGATGCCGGCAACTACGAGATGATCACCGGCTACCGCGCC
CAGCACAGCACCCACAAGACGCCCACCAAGGGAGGCATCCGTTTCTCGTT
GGATGTGTCACGCGATGAGGTCAAAGCCCTGTCCGCCCTGATGACCTTCA
AGTGCGCCTGCGTGGATGTGCCATTCGGCGGAGCCAAGGCCGGTCTGAAG
ATCAACCCTAAGGAGTACTCCGAGCACGAGCTGGAGAAGATCACCCGTCG
CTTCACCCTTGAGTTGGCCAAGAAGGGCTTCATTGGACCCGGTGTCGATG
TGCCCGCCCCCGACATGGGAACCGGTGAGCGCGAGATGTCCTGGATTGCC
GATACTTATGCCAAGACCATCGGTCACCTGGACATCAATGCTCATGCCTG
TGTCACCGGCAAGCCCATCAACCAGGGCGGTATCCACGGACGCGTCTCGG
CCACCGGTCGCGGTGTCTCCACGGCCTGGAGAACTTCATCAACGAGGCCA
ACTACATGAGCCAGATCGGCAACACTCCGGGCTGGGGC
BS09652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5320-PF | 1650 | Gdh-RF | 1..802 | 17..818 | 4010 | 100 | Plus |
CG5320-PA | 1689 | Gdh-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
CG5320-PB | 1215 | Gdh-RB | 1..328 | 491..818 | 1640 | 100 | Plus |
CG5320-PE | 1002 | Gdh-RE | 1..154 | 665..818 | 770 | 100 | Plus |
CG5320-PF | 1650 | Gdh-RF | 803..873 | 818..888 | 305 | 97.1 | Plus |
CG5320-PA | 1689 | Gdh-RA | 803..873 | 818..888 | 305 | 97.1 | Plus |
CG5320-PB | 1215 | Gdh-RB | 329..399 | 818..888 | 305 | 97.1 | Plus |
CG5320-PE | 1002 | Gdh-RE | 155..225 | 818..888 | 305 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdh-RA | 2195 | CG5320-RA | 90..963 | 16..888 | 4315 | 99.7 | Plus |
Gdh-RF | 2156 | CG5320-RF | 90..963 | 16..888 | 4315 | 99.7 | Plus |
Gdh-RD | 1796 | CG5320-RD | 147..603 | 433..888 | 2230 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23938120..23938557 | 869..433 | 2140 | 99.8 | Minus |
3R | 32079331 | 3R | 23942591..23943012 | 437..16 | 2110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:02:09 has no hits.
BS09652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:16 Download gff for
BS09652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5320-PA | 1..873 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:30 Download gff for
BS09652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5320-PA | 1..873 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:45 Download gff for
BS09652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdh-RF | 82..963 | 7..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:44 Download gff for
BS09652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdh-RF | 82..963 | 7..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:44 Download gff for
BS09652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23938120..23938555 | 435..869 | 99 | <- | Minus |
3R | 23942594..23943020 | 7..434 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:45 Download gff for
BS09652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19763842..19764277 | 435..869 | 99 | <- | Minus |
arm_3R | 19768316..19768742 | 7..434 | 99 | | Minus |
BS09652.pep Sequence
Translation from 16 to 1704
> BS09652.pep
MYHLKSLARQGARRQQELATLAKALPTAVMQSSRGYATEHQIPDRLKDVP
TAKDPRFFDMVEYFFHRGCQIAEESLVDDMKGKLTRDEKKQKVKGILMLM
QPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLDVSRD
EVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLEL
AKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTGKP
INQGGIHGRVSATGRGVFHGLENFINEANYMSQIGTTPGWGGKTFIVQGF
GNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEGIDPKLLEDYKNEHGTIV
GYQNAKPYEGENLMFEKCDIFIPAAVEKVITSENANRIQAKIIAEAANGP
TTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKY
ERESNYHLLASVQQSIERIINDESVQESLERRFGRVGGRIPVTPSESFQK
RISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGLDLRTAAYVNSIEK
IFTTYRDAGLAF*
BS09652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdh-PA | 562 | CG5320-PA | 1..562 | 1..562 | 2932 | 100 | Plus |
Gdh-PF | 549 | CG5320-PF | 1..549 | 1..562 | 2848 | 97.7 | Plus |
Gdh-PB | 404 | CG5320-PB | 1..404 | 159..562 | 2116 | 100 | Plus |
Gdh-PD | 391 | CG5320-PD | 1..391 | 159..562 | 2032 | 96.8 | Plus |
CG4434-PA | 535 | CG4434-PA | 26..533 | 40..561 | 1222 | 46.6 | Plus |