Clone BS09652 Report

Search the DGRC for BS09652

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptGdh-RA
Protein status:BS09652.pep: full length peptide match
Sequenced Size:1721

Clone Sequence Records

BS09652.complete Sequence

1721 bp assembled on 2009-12-07

GenBank Submission: KX804447

> BS09652.complete
GAAGTTATCAGTCGACATGTATCACCTGAAGAGTCTGGCCCGCCAGGGCG
CCCGCCGCCAGCAGGAGCTGGCCACGCTGGCCAAGGCACTGCCCACCGCT
GTGATGCAGTCGAGCCGCGGCTATGCCACCGAGCACCAGATTCCCGACCG
CCTCAAGGATGTGCCCACCGCCAAGGATCCGCGCTTCTTCGACATGGTCG
AGTATTTCTTCCATCGCGGCTGCCAAATCGCCGAGGAATCGCTGGTGGAC
GACATGAAGGGCAAGCTGACCCGCGACGAGAAGAAGCAGAAGGTGAAGGG
CATCCTCATGCTGATGCAGCCCTGCGACCACATCATCGAGATCGCCTTCC
CCCTGCGCCGCGATGCCGGCAACTACGAGATGATCACCGGCTACCGCGCC
CAGCACAGCACCCACAAGACGCCCACCAAGGGAGGCATCCGTTTCTCGTT
GGATGTGTCACGCGATGAGGTCAAAGCCCTGTCCGCCCTGATGACCTTCA
AGTGCGCCTGCGTGGATGTGCCATTCGGCGGAGCCAAGGCCGGTCTGAAG
ATCAACCCTAAGGAGTACTCCGAGCACGAGCTGGAGAAGATCACCCGTCG
CTTCACCCTTGAGTTGGCCAAGAAGGGCTTCATTGGACCCGGTGTCGATG
TGCCCGCCCCCGACATGGGAACCGGTGAGCGCGAGATGTCCTGGATTGCC
GATACTTATGCCAAGACCATCGGTCACCTGGACATCAATGCTCATGCCTG
TGTCACCGGCAAGCCCATCAACCAGGGCGGTATCCACGGACGCGTCTCGG
CCACCGGTCGCGGTGTCTTCCACGGCCTGGAGAACTTCATCAACGAGGCC
AACTACATGAGCCAGATCGGCACCACTCCCGGCTGGGGCGGCAAGACCTT
CATCGTCCAGGGCTTCGGTAACGTGGGCCTGCACACCACTCGCTATCTGA
CCCGCGCCGGAGCCACCTGCATCGGTGTCATTGAGCACGACGGCACTCTG
TACAACCCGGAGGGCATTGACCCTAAGCTGCTGGAGGACTACAAGAACGA
GCACGGCACCATTGTGGGCTACCAGAACGCCAAGCCCTACGAGGGCGAGA
ACCTCATGTTCGAGAAGTGCGACATCTTCATTCCCGCTGCCGTCGAGAAG
GTCATCACCAGCGAGAATGCCAACCGCATTCAAGCTAAGATCATTGCCGA
GGCTGCCAACGGCCCCACCACCCCCGCTGCCGACAAGATCCTCATCGATC
GCAACATCCTGGTCATTCCCGATCTGTACATCAACGCCGGTGGTGTCACC
GTCTCCTTCTTCGAGTGGCTGAAGAACCTGAACCACGTCTCGTACGGTCG
CCTGACCTTCAAGTATGAGCGCGAGTCCAACTACCATCTGCTTGCCTCAG
TCCAACAGTCAATTGAAAGAATCATTAATGACGAATCCGTTCAAGAGTCC
CTGGAGCGTCGCTTCGGCCGTGTGGGCGGTCGCATCCCCGTGACCCCCTC
CGAGTCGTTCCAGAAGCGCATCTCCGGCGCCTCCGAGAAGGATATCGTGC
ACTCCGGCCTGGACTACACCATGGAGCGCTCCGCCCGCGCCATCATGAAG
ACAGCCATGAAGTACAACCTGGGCCTGGACCTCAGAACCGCTGCCTACGT
CAACTCCATTGAGAAGATCTTCACCACATACCGCGATGCCGGCCTGGCCT
TCTAAAAGCTTTCAAGACCAT

BS09652.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Gdh-RA 1689 CG5320-PA 1..1689 17..1705 8445 100 Plus
Gdh-RF 1650 CG5320-PF 1..1394 17..1410 6895 99.6 Plus
Gdh-RB 1215 CG5320-PB 1..1215 491..1705 6075 100 Plus
Gdh-RF 1650 CG5320-PF 1378..1650 1433..1705 1365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Gdh-RA 2195 CG5320-RA 90..1779 16..1705 8450 100 Plus
Gdh-RF 2156 CG5320-RF 90..1484 16..1410 6900 99.6 Plus
Gdh-RB 1835 CG5320-RB 147..1419 433..1705 6365 100 Plus
Gdh-RF 2156 CG5320-RF 1468..1740 1433..1705 1365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23938120..23938557 870..433 2190 100 Minus
3R 32079331 3R 23942591..23943012 437..16 2110 100 Minus
3R 32079331 3R 23937732..23938052 1189..869 1605 100 Minus
3R 32079331 3R 23936374..23936646 1705..1433 1365 100 Minus
3R 32079331 3R 23937423..23937629 1394..1188 1035 100 Minus
3R 32079331 3R 23936981..23937020 1433..1394 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:31:29 has no hits.

BS09652.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:01 Download gff for BS09652.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 88..1774 17..1703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:05 Download gff for BS09652.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 91..1777 17..1703 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:42 Download gff for BS09652.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 88..1774 17..1703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:13 Download gff for BS09652.complete
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 91..1777 17..1703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:13 Download gff for BS09652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23936376..23936645 1434..1703 100 <- Minus
3R 23936981..23937019 1395..1433 100 <- Minus
3R 23937423..23937627 1190..1394 100 <- Minus
3R 23937732..23938051 870..1189 100 <- Minus
3R 23938121..23938555 435..869 100 <- Minus
3R 23942594..23943011 17..434 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:05 Download gff for BS09652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19762098..19762367 1434..1703 100 <- Minus
arm_3R 19762703..19762741 1395..1433 100 <- Minus
arm_3R 19763145..19763349 1190..1394 100 <- Minus
arm_3R 19763454..19763773 870..1189 100 <- Minus
arm_3R 19763843..19764277 435..869 100 <- Minus
arm_3R 19768316..19768733 17..434 100   Minus

BS09652.3prime Sequence

890 bp (792 high quality bases) assembled on 2006-04-19

> BS09652.3prime
ATGGTCTTGAAAGCTTTTAGAAGGCCAGGCCGGCATCGCGGTATGTGGTG
AAGATCTTCTCAATGGAGTTGACGTAGGCAGCGGTTCTGAGGTCCAGGCC
CAGGTTGTACTTCATGGCTGTCTTCATGATGGCGCGGGCGGAGCGCTCCA
TGGTGTAGTCCAGGCCGGAGTGCACGATATCCTTCTCGGAGGCGCCGGAG
ATGCGCTTCTGGAACGACTCGGAGGGGGTCACGGGGATGCGACCGCCCAC
ACGGCCGAAGCGACGCTCCAGGGACTCTTGAACGGATTCGTCATTAATGA
TTCTTTCAATTGACTGTTGGACTGAGGCAAGCAGATGGTAGTTGGACTCG
CGCTCATACTTGAAGGTCAGGCGACCGTACGAGACGTGGTTCAGGTTCTT
CAGCCACTCGAAGAAGGAGACGGTGACACCACCGGCGTTGATGTACAGAT
CGGGAATGACCAGGATGTTGCGATCGATGAGGATCTTGTCGGCAGCGGGG
GTGGTGGGGCCGTTGGCAGCCTCGGCAATGATCTTAGCTTGAATGCGGTT
GGCATTCTCGCTGGTGATGACCTTCTCGACGGCAGCGGGAATGAAGATGT
CGCACTTCTCGAACATGAGGTTCTCGCCCTCGTAGGGCTTGGCGTTCTGG
TAGCCCACAATGGTGCCGTGCTCGTTCTTGTAGTCCTCCAGCAGCTTAGG
GTCAATGCCCTCCGGGTTGTACAGAGTGCCGTCGTGCTCAATGACACCGA
TGCAGGTGGCTCCGGCGCGGGTCAGATAGCGAGTGGTGTGCAGGCCCACG
TTACCGAAGCCCTGGACGATGAAGGTCTTGCCGCCCCAGCCGGGAGTGGT
GCCGATCTGGCTCATGTAGTTGGCCTCGTTGATGAAGTTC

BS09652.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5320-PA 1689 Gdh-RA 816..1689 890..17 4370 100 Minus
CG5320-PB 1215 Gdh-RB 342..1215 890..17 4370 100 Minus
CG5320-PE 1002 Gdh-RE 168..730 890..328 2815 100 Minus
CG5320-PF 1650 Gdh-RF 816..1378 890..328 2815 100 Minus
CG5320-PE 1002 Gdh-RE 730..1002 289..17 1365 100 Minus
CG5320-PF 1650 Gdh-RF 1378..1650 289..17 1365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Gdh-RB 1835 CG5320-RB 546..1419 890..17 4370 100 Minus
Gdh-RA 2195 CG5320-RA 906..1779 890..17 4370 100 Minus
Gdh-RD 1796 CG5320-RD 546..1124 890..312 2820 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23937732..23938052 533..853 1605 100 Plus
3R 32079331 3R 23936374..23936646 17..289 1365 100 Plus
3R 32079331 3R 23937423..23937629 328..534 1035 100 Plus
3R 32079331 3R 23936981..23937020 289..328 200 100 Plus
3R 32079331 3R 23938120..23938158 852..890 195 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:42:07 has no hits.

BS09652.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:15 Download gff for BS09652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5320-PA 816..1689 17..890 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:28 Download gff for BS09652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5320-PB 342..1215 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:30:19 Download gff for BS09652.3prime
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 906..1781 13..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:53 Download gff for BS09652.3prime
Subject Subject Range Query Range Percent Splice Strand
Gdh-RA 906..1781 13..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:53 Download gff for BS09652.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23936372..23936645 13..288 99 <- Plus
3R 23936981..23937019 289..327 100 <- Plus
3R 23937423..23937627 328..532 100 <- Plus
3R 23937732..23938051 533..852 100 <- Plus
3R 23938121..23938158 853..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:30:19 Download gff for BS09652.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19762094..19762367 13..288 99 <- Plus
arm_3R 19762703..19762741 289..327 100 <- Plus
arm_3R 19763145..19763349 328..532 100 <- Plus
arm_3R 19763454..19763773 533..852 100 <- Plus
arm_3R 19763843..19763880 853..890 100   Plus

BS09652.5prime Sequence

888 bp (796 high quality bases) assembled on 2006-04-19

> BS09652.5prime
GAAGTTATCAGTCGACATGTATCACCTGAAGAGTCTGGCCCGCCAGGGCG
CCCGCCGCCAGCAGGAGCTGGCCACGCTGGCCAAGGCACTGCCCACCGCT
GTGATGCAGTCGAGCCGCGGCTATGCCACCGAGCACCAGATTCCCGACCG
CCTCAAGGATGTGCCCACCGCCAAGGATCCGCGCTTCTTCGACATGGTCG
AGTATTTCTTCCATCGCGGCTGCCAAATCGCCGAGGAATCGCTGGTGGAC
GACATGAAGGGCAAGCTGACCCGCGACGAGAAGAAGCAGAAGGTGAAGGG
CATCCTCATGCTGATGCAGCCCTGCGACCACATCATCGAGATCGCCTTCC
CCCTGCGCCGCGATGCCGGCAACTACGAGATGATCACCGGCTACCGCGCC
CAGCACAGCACCCACAAGACGCCCACCAAGGGAGGCATCCGTTTCTCGTT
GGATGTGTCACGCGATGAGGTCAAAGCCCTGTCCGCCCTGATGACCTTCA
AGTGCGCCTGCGTGGATGTGCCATTCGGCGGAGCCAAGGCCGGTCTGAAG
ATCAACCCTAAGGAGTACTCCGAGCACGAGCTGGAGAAGATCACCCGTCG
CTTCACCCTTGAGTTGGCCAAGAAGGGCTTCATTGGACCCGGTGTCGATG
TGCCCGCCCCCGACATGGGAACCGGTGAGCGCGAGATGTCCTGGATTGCC
GATACTTATGCCAAGACCATCGGTCACCTGGACATCAATGCTCATGCCTG
TGTCACCGGCAAGCCCATCAACCAGGGCGGTATCCACGGACGCGTCTCGG
CCACCGGTCGCGGTGTCTCCACGGCCTGGAGAACTTCATCAACGAGGCCA
ACTACATGAGCCAGATCGGCAACACTCCGGGCTGGGGC

BS09652.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5320-PF 1650 Gdh-RF 1..802 17..818 4010 100 Plus
CG5320-PA 1689 Gdh-RA 1..802 17..818 4010 100 Plus
CG5320-PB 1215 Gdh-RB 1..328 491..818 1640 100 Plus
CG5320-PE 1002 Gdh-RE 1..154 665..818 770 100 Plus
CG5320-PF 1650 Gdh-RF 803..873 818..888 305 97.1 Plus
CG5320-PA 1689 Gdh-RA 803..873 818..888 305 97.1 Plus
CG5320-PB 1215 Gdh-RB 329..399 818..888 305 97.1 Plus
CG5320-PE 1002 Gdh-RE 155..225 818..888 305 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Gdh-RA 2195 CG5320-RA 90..963 16..888 4315 99.7 Plus
Gdh-RF 2156 CG5320-RF 90..963 16..888 4315 99.7 Plus
Gdh-RD 1796 CG5320-RD 147..603 433..888 2230 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23938120..23938557 869..433 2140 99.8 Minus
3R 32079331 3R 23942591..23943012 437..16 2110 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:02:09 has no hits.

BS09652.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:16 Download gff for BS09652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5320-PA 1..873 17..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:30 Download gff for BS09652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5320-PA 1..873 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:45 Download gff for BS09652.5prime
Subject Subject Range Query Range Percent Splice Strand
Gdh-RF 82..963 7..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:44 Download gff for BS09652.5prime
Subject Subject Range Query Range Percent Splice Strand
Gdh-RF 82..963 7..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:44 Download gff for BS09652.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23938120..23938555 435..869 99 <- Minus
3R 23942594..23943020 7..434 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:45 Download gff for BS09652.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19763842..19764277 435..869 99 <- Minus
arm_3R 19768316..19768742 7..434 99   Minus

BS09652.pep Sequence

Translation from 16 to 1704

> BS09652.pep
MYHLKSLARQGARRQQELATLAKALPTAVMQSSRGYATEHQIPDRLKDVP
TAKDPRFFDMVEYFFHRGCQIAEESLVDDMKGKLTRDEKKQKVKGILMLM
QPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLDVSRD
EVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLEL
AKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTGKP
INQGGIHGRVSATGRGVFHGLENFINEANYMSQIGTTPGWGGKTFIVQGF
GNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEGIDPKLLEDYKNEHGTIV
GYQNAKPYEGENLMFEKCDIFIPAAVEKVITSENANRIQAKIIAEAANGP
TTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKY
ERESNYHLLASVQQSIERIINDESVQESLERRFGRVGGRIPVTPSESFQK
RISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLGLDLRTAAYVNSIEK
IFTTYRDAGLAF*

BS09652.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
Gdh-PA 562 CG5320-PA 1..562 1..562 2932 100 Plus
Gdh-PF 549 CG5320-PF 1..549 1..562 2848 97.7 Plus
Gdh-PB 404 CG5320-PB 1..404 159..562 2116 100 Plus
Gdh-PD 391 CG5320-PD 1..391 159..562 2032 96.8 Plus
CG4434-PA 535 CG4434-PA 26..533 40..561 1222 46.6 Plus