Clone Sequence Records
BS09661.3prime Sequence
911 bp (864 high quality bases) assembled on 2006-04-19
> BS09661.3prime
ATGGTCTAGAAAGCTTCTACTGGCGACGCATGCGCTCGATGGGCTCCCTG
GGCCGGATGCGGTAGCGCTTCGAGGAGCTGGACGGCGACAGCGGGCTACA
GTACTGGCTGTCCAGCGTCTGAGTGCGCTTTCTCTTGAGGCACTGCTGGT
CCTCCATGGAGGAGTCCCTTGCACTGGGGCGCACCAGGGATCCAGCGATG
GAGGCGCAGCGACGGATGAGTGAGCCCGAACCAGCGTTCTCCTTATCCGA
ATCCCTGTCCCTGTCCCTGTCCTTTTCGCGTTCGCCGCGCAAGCTGGCCG
GCAGTCGCATCATGGAACTCATCAGCGACCACAGGCGACCGGAGTTGGGC
GCCTCCAGCTTTTTGTCGTTGCACGTGGAGGCGTTTGTGGGGCGGAACAC
CTCGTCCTCCTCTTCTGCGTCCACGACCTCCGGCTCGCCCACATCCTGCA
CGCCGCTATAGACCCTCTGCTGACGGCATTCCCGCAACGGAGGACGCACC
CTGGGTTGCTGCAATGGCGGCGAGATCAGGGCCATCACCGCCAGCCCCTT
CTCCTTCGGCTTATCCTTCTTGGGCGAAAACTCGCCGCTCAGCTGGCGCG
GCACAATCGCCTGGCGATGACGACGCTCTGGAATTTCCGGCGTTCCCGGT
TCCGGCGTGAAAAACTGGTCCTTGGTTTCATCGCCCTCGCCATTCGATCG
CATCTGTTGGCTGCTCTTGGGCGGCGTCTCGAACTTGATCTGCTTCTTGT
TGATGCCGGCACCGGTGACACGGATGGGCGTTATGGCCGGCACGTGGCAC
ACTTCCGCTGATTCCGAGGTGGAGCGTATGATCTCGACGCTCTCGCATGA
GTTGTACACCGTGGAAGAGGTCTTCTGTGAGCTGGAGTTCGTCCGCGTGA
TGATGATCGAC
BS09661.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2707-PA | 2091 | fs(1)Ya-RA | 1197..2091 | 911..17 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-RA | 2235 | CG2707-RA | 1255..2149 | 911..17 | 4475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2725597..2726491 | 911..17 | 4475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:27:45 has no hits.
BS09661.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:30 Download gff for
BS09661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2707-PA | 1197..2091 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:50 Download gff for
BS09661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2707-PA | 1197..2091 | 17..911 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:11:52 Download gff for
BS09661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 1255..2155 | 7..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:43 Download gff for
BS09661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 1255..2155 | 7..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:43 Download gff for
BS09661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2725597..2726497 | 7..911 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:11:52 Download gff for
BS09661.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2619630..2620530 | 7..911 | 99 | | Minus |
BS09661.5prime Sequence
933 bp (882 high quality bases) assembled on 2006-04-19
> BS09661.5prime
GAAGTTATCAGTCGACATGTCGTTTTCCAATGTCCTAATCATGCGACAGC
CCGACGAGGGCAAGTGCCACATTTGCAAGCGTGTCTTCTGTTGCGGCAAA
TGCCGCCAGAAGCATCAGTTCAAAGCGCACGCCATTGCTGTGCGCGAGCC
ATTGGGATTGAGGTCTGCCGGCGGCGGTATCATCGAGCATCGCCATCAAA
TGGAGTCCGGCGCGACCACCATCTATGTGTTCTGTCCGATCTGCGAGCGG
CGTCCCCTGCTGCTGCGCGAGGAGATGCACGGCGAGCTGCTGGCCCACAT
CGAGACCTGCCACCTGCCGCTGCGATGCCGCAAGTGCCAGCGCAACTACA
CGCGCGTCGATGACCTGCGGGAGTTCAGCAAGTGCGTGGACCAGCAGCAG
AGCTGCACTGATGTCACCGGCGCCACGGAGACATCGAAGGCGACGCTAAA
GAAGGCAGCGAATAGCACCGCCATTTCAACGCAAACGTCGCCGTCCGTAA
CGCCCATTTCACTGATCAACATGCGCTGGAAGGCCAAGAGCCGTGTCACC
CACGAGGAGTTCATCAGCGACAGCGTCTCCTCCATACGCAACCTGTCGTC
GTTCAGCAACAGCTCCATTCGTCGCTCCATTGGCCAACTGGGCGTGAATC
CGTCCGAAACGATGGAGAAGGGCAAGGTCATACGCTCGACGTCCACACCA
CTGCACGTGGAGTCCGTGTTCGCCAAGCCCAAGGAGCCGATTACCTTCAA
TGCTTCCACTGGCGGCCACGTGTCCAGCATCTACCACGAGGAGCCCAGTC
CGACACCCGAAAGCAATCCCGTCCAGCAGCAGCAGCAGCAGCAGCAGCCG
TTGCAGCAGCGCGCCTGGAAAATGGGCGCCCGCAACAGATGAGCGCCGCA
ACGGCGCTGCGCCAGGTCATGTCCAAGAGCATT
BS09661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2707-PA | 2091 | fs(1)Ya-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
| CG2707-PA | 2091 | fs(1)Ya-RA | 872..918 | 887..933 | 210 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-RA | 2235 | CG2707-RA | 59..976 | 17..933 | 4550 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2724441..2725318 | 57..933 | 4325 | 99.8 | Plus |
| X | 23542271 | X | 2724344..2724386 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:50:28 has no hits.
BS09661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:30 Download gff for
BS09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2707-PA | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:52 Download gff for
BS09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2707-PA | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:45:59 Download gff for
BS09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 53..976 | 9..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:23 Download gff for
BS09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 53..976 | 9..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:23 Download gff for
BS09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2724338..2724385 | 9..58 | 92 | -> | Plus |
| X | 2724443..2725318 | 59..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:45:59 Download gff for
BS09661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2618371..2618418 | 9..58 | 92 | -> | Plus |
| arm_X | 2618476..2619351 | 59..933 | 99 | | Plus |
BS09661.complete Sequence
2123 bp assembled on 2008-01-16
GenBank Submission: FJ636460
> BS09661.complete
GAAGTTATCAGTCGACATGTCGTTTTCCAATGTCCTAATCATGCGACAGC
CCGACGAGGGCAAGTGCCACATTTGCAAGCGTGTCTTCTGTTGCGGCAAA
TGCCGCCAGAAGCATCAGTTCAAAGCGCACGCCATTGCTGTGCGCGAGCC
ATTGGGATTGAGGTCTGCCGGCGGCGGTATCATCGAGCATCGCCATCAAA
TGGAGTCCGGCGCGACCACCATCTATGTGTTCTGTCCGATCTGCGAGCGG
CGTCCCCTGCTGCTGCGCGAGGAGATGCACGGCGAGCTGCTGGCCCACAT
CGAGACCTGCCACCTGCCGCTGCGATGCCGCAAGTGCCAGCGCAACTACA
CGCGCGTCGATGACCTGCGGGAGTTCAGCAAGTGCGTGGACCAGCAGCAG
AGCTGCACTGATGTCACCGGCGCCACGGAGACATCGAAGGCGACGCTAAA
GAAGGCAGCGAATAGCACCGCCATTTCAACGCAAACGTCGCCGTCCGTAA
CGCCCATTTCACTGATCAACATGCGCTGGAAGGCCAAGAGCCGTGTCACC
CACGAGGAGTTCATCAGCGACAGCGTCTCCTCCATACGCAACCTGTCGTC
GTTCAGCAACAGCTCCATTCGTCGCTCCATTGGCCAACTGGGCGTGAATC
CGTCCGAAACGATGGAGAAGGGCAAGGTCATACGCTCGACGTCCACACCA
CTGCACGTGGAGTCCGTGTTCGCCAAGCCCAAGGAGCCGATTACCTTCAA
TGCTTCCACTGGCGGCCACGTGTCCAGCATCTACCACGAGGAGCCCAGTC
CGACACCCGAAAGCAATCCCGTCCAGCAGCAGCAGCAGCAGCAGCAGCCG
TTGCAGCAGCGCGCCTGGAAAATGGGCGCCCGCAACAAGATGAGCGCCGC
AACGCCGCTGCGCCAGGTCATGTCCAAGAGCATTCAGAAGGCCTTCGTCG
AGCACGGCGGCATGATGGTCCACCAGCCACCATCCGCAGTGGTGCAACGT
CGCGTGCGCCTCGATCTCAGCGAGCACAGTTCGCACGAGGCAGCAGGCTC
GTCCGCTCTGGACCTGCGACTCTCGCCAGCTATGCGGCGCACCCAGAGCG
AGTCCAGCGCCTCGGAGGTCAACAGCGGCAGCAGCTCCAGCTACAGCACC
TCGCGGAATGCCGATCTATGCAAGCGGCAGTTCTTGCTGTCCGCACAGAA
ACTCACCACCGAGTCGATCATCATCACGCGGACGAACTCCAGCTCACAGA
AGACCTCTTCCACGGTGTACAACTCATGCGAGAGCGTCGAGATCATACGC
TCCACCTCGGAATCAGCGGAAGTGTGCCACGTGCCGGCCATAACGCCCAT
CCGTGTCACCGGTGCCGGCATCAACAAGAAGCAGATCAAGTTCGAGACGC
CGCCCAAGAGCAGCCAACAGATGCGATCGAATGGCGAGGGCGATGAAACC
AAGGACCAGTTTTTCACGCCGGAACCGGGAACGCCGGAAATTCCAGAGCG
TCGTCATCGCCAGGCGATTGTGCCGCGCCAGCTGAGCGGCGAGTTTTCGC
CCAAGAAGGATAAGCCGAAGGAGAAGGGGCTGGCGGTGATGGCCCTGATC
TCGCCGCCATTGCAGCAACCCAGGGTGCGTCCTCCGTTGCGGGAATGCCG
TCAGCAGAGGGTCTATAGCGGCGTGCAGGATGTGGGCGAGCCGGAGGTCG
TGGACGCAGAAGAGGAGGACGAGGTGTTCCGCCCCACAAACGCCTCCACG
TGCAACGACAAAAAGCTGGAGGCGCCCAACTCCGGTCGCCTGTGGTCGCT
GATGAGTTCCATGATGCGACTGCCGGCCAGCTTGCGCGGCGAACGCGAAA
AGGACAGGGACAGGGACAGGGATTCGGATAAGGAGAACGCTGGTTCGGGC
TCACTCATCCGTCGCTGCGCCTCCATCGCTGGATCCCTGGTGCGCCCCAG
TGCAAGGGACTCCTCCATGGAGGACCAGCAGTGCCTCAAGAGAAAGCGCA
CTCAGACGCTGGACAGCCAGTACTGTAGCCCGCTGTCGCCGTCCAGCTCC
TCGAAGCGCTACCGCATCCGGCCCAGGGAGCCCATCGAGCGCATGCGTCG
CCAGTAGAAGCTTTCTAGACCAT
BS09661.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-RA | 2091 | CG2707-PA | 1..2091 | 17..2107 | 10455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-RA | 2235 | CG2707-RA | 59..2149 | 17..2107 | 10455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2724441..2726491 | 57..2107 | 10255 | 100 | Plus |
| X | 23542271 | X | 2724344..2724386 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:16 has no hits.
BS09661.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:25 Download gff for
BS09661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 1..2091 | 17..2107 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:58 Download gff for
BS09661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 59..2149 | 17..2107 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:58 Download gff for
BS09661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 59..2149 | 17..2107 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:25 Download gff for
BS09661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 53..2155 | 9..2117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:18 Download gff for
BS09661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 59..2149 | 17..2107 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:18 Download gff for
BS09661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2724344..2724385 | 17..58 | 100 | -> | Plus |
| X | 2724443..2726491 | 59..2107 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:58 Download gff for
BS09661.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2618377..2618418 | 17..58 | 100 | -> | Plus |
| arm_X | 2618476..2620524 | 59..2107 | 100 | | Plus |
BS09661.pep Sequence
Translation from 16 to 2106
> BS09661.pep
MSFSNVLIMRQPDEGKCHICKRVFCCGKCRQKHQFKAHAIAVREPLGLRS
AGGGIIEHRHQMESGATTIYVFCPICERRPLLLREEMHGELLAHIETCHL
PLRCRKCQRNYTRVDDLREFSKCVDQQQSCTDVTGATETSKATLKKAANS
TAISTQTSPSVTPISLINMRWKAKSRVTHEEFISDSVSSIRNLSSFSNSS
IRRSIGQLGVNPSETMEKGKVIRSTSTPLHVESVFAKPKEPITFNASTGG
HVSSIYHEEPSPTPESNPVQQQQQQQQPLQQRAWKMGARNKMSAATPLRQ
VMSKSIQKAFVEHGGMMVHQPPSAVVQRRVRLDLSEHSSHEAAGSSALDL
RLSPAMRRTQSESSASEVNSGSSSSYSTSRNADLCKRQFLLSAQKLTTES
IIITRTNSSSQKTSSTVYNSCESVEIIRSTSESAEVCHVPAITPIRVTGA
GINKKQIKFETPPKSSQQMRSNGEGDETKDQFFTPEPGTPEIPERRHRQA
IVPRQLSGEFSPKKDKPKEKGLAVMALISPPLQQPRVRPPLRECRQQRVY
SGVQDVGEPEVVDAEEEDEVFRPTNASTCNDKKLEAPNSGRLWSLMSSMM
RLPASLRGEREKDRDRDRDSDKENAGSGSLIRRCASIAGSLVRPSARDSS
MEDQQCLKRKRTQTLDSQYCSPLSPSSSSKRYRIRPREPIERMRRQ*
BS09661.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-PA | 696 | CG2707-PA | 1..696 | 1..696 | 3582 | 100 | Plus |
