Clone Sequence Records
BS09662.3prime Sequence
844 bp (832 high quality bases) assembled on 2006-04-19
> BS09662.3prime
ATGGTCTAGAAAGCTTTCAATACATGTATGCAGGAGCAGGAGCCGTGGCA
GCCGTGCTGCCCGCATCCGATGCACCAACTTTCTGGAGCGGAACAATCAT
GGACTTCATGTCTCTGTTCGAGGTCTTCCGCAACTCCGTAGCCGCGTGCT
GCAGCTGCAGGGTGCAGTCGTTGCTGGCTCCGTTCAGGCTGAGATGGGCG
CACTCCTTCTCCAGCAGCATGGCCAAAGCCTCCAGCAACTCGACGAATCC
CAGCGCCAGGGCAGCGCGGCGGATGCGATTGAGCTCCTTGTAGAAGTGCT
GCGTCTTGTCGGGCATCTTCTTGGCGTGTCGCAGTACCTTCTGGACGTCG
GACTGCAGGCTAGCCTGTCGTATCCACACCACACTGCTCTGCGAATAAGA
TCTGCGGTCGGCACGCACCGGAAAACTGGCCGTCTCTCCGGGCGCCAAAT
CCTCGGGGAAGCCCAGCGATTCCAGGTCTCCTAGCCAGGGAATCACGTTC
GTGCCGGGTGGAAGTATGTTCAGCATCAGGTTTGACTTCTTCTTGCTGTC
GGTGAATGCATATATGAATCCGTACCACTTGTCACCCACTCGAACCAGAG
CTGCCATGTTCTCCATTTTGAGGGCTCCGTGAAGGAGGACGCACAAGTTT
TCTTTTTGTTGCTCTGTCTGGGGGCCGGGTTTCAAGACAATGGTCACATC
GTCGTCGCCACTTTCCTCCGTGTCTTTTGAATCCTTGGCGTAAAACTCTT
TGATATCGGCTTCCAGCTTCTCCAGCTCGTAGTTGGGATTGCTGGTATCT
AGATTGAGCTTCGGTGGCTTGGCTGCTGCGCTCAGGTTTCCAGA
BS09662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4785-PA | 1764 | CG4785-RA | 937..1764 | 844..17 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-RA | 1925 | CG4785-RA | 1034..1863 | 844..15 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1165534..1166363 | 844..15 | 4150 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 20:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 892..1008 | 261..143 | 121 | 58 | Minus |
BS09662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:31 Download gff for
BS09662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-PA | 938..1764 | 17..843 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:53 Download gff for
BS09662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-PA | 938..1764 | 17..843 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:38:23 Download gff for
BS09662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 1035..1876 | 3..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:54 Download gff for
BS09662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS14-RA | 1035..1876 | 3..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:54 Download gff for
BS09662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1165535..1166376 | 3..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:38:23 Download gff for
BS09662.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1165535..1166376 | 3..843 | 99 | | Minus |
BS09662.5prime Sequence
931 bp (800 high quality bases) assembled on 2006-04-19
> BS09662.5prime
GAAGTTATCAGTCGACATGCCCACCTTAATAGCGCTGGATGCATCGCTAT
CGATGCTGCGCCCGGTGCCGGGAAGAAATGAGCACACCTACCAGTCGCTG
GCCACCAAGGGCATCCAGCATCTGCTGGACAATCTCACGGCGGCCGGCAA
ATTGGAGCACGTTGCTCTGCTCTCCTATTCGACGACGGCGGAACTGAAGG
TGGACTTCACGCGGGACTACGACCAGGTGCGGCAGGCGGTCAAGAAGGTG
GAGCCCGTGGACAAGGCCTGCCTGATGAGCATGCTCAAGGCGGTGGTGTC
CATAATGTCGCCGTGGGGCAACCAGAACATCCTGCAGGTGGTTGTCTTTA
CGGACTGCGGCCTCGGCTTTGGCAACACCTCGATCACGGGCTTCCTGGAG
GCCTACGCCGAAAAGGAGTCGGAGCCGGAGTTCGGCTTCCTGAAGACTCT
GGCCAACTACAACCTGAATTTCATCTGCCTGGGCCTGCACGGCGATTACT
ACTTCACCAGGGGATTGGCGGTGTACCAGCAGCTGCTGGACAAGGTCTCA
CTGAAGGGCCAGCTCTTCATGACAAAGCCCGCCAAGAGCAGCGATGCAGT
CGAGGGAAATCCCAATCCCAACCCGAACCCCAGCCACAAAAGCGAACTGG
GCCGCACTACGGTCTTCGAACTAATTGAACGTCTCTGCGAGGCCAGCTAC
AAGAGTTCGGAGGTGACCCTGAAATGCGGCAGCTACTTCCGCATGGAGGC
ATCTGTTCTGCTCTGGCCACCGACGGCTCCGTATGAGCAAAAGTCCCACA
TATTCNGCCGAGAACCCACCATTCGCCACACAGACCAGAAGATTGAGGTG
TGTGGCTTCCTGTCCCTTTCGGACATTGGATCACCGGCCACCCTGAGTCG
ACACTGGGTGCTGCCCAAAGTGGAGCGGGAG
BS09662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4785-PA | 1764 | CG4785-RA | 1..915 | 17..931 | 4556 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-RA | 1925 | CG4785-RA | 94..1012 | 13..931 | 4569 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1164536..1165081 | 13..558 | 2715 | 99.8 | Plus |
| 2L | 23513712 | 2L | 1165138..1165512 | 557..931 | 1864 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 04:14:21 has no hits.
BS09662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:32 Download gff for
BS09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:55 Download gff for
BS09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:50:54 Download gff for
BS09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 86..1012 | 5..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:22:23 Download gff for
BS09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS14-RA | 86..1012 | 5..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:22:23 Download gff for
BS09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1164533..1165080 | 11..557 | 99 | -> | Plus |
| 2L | 1165139..1165512 | 558..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:50:54 Download gff for
BS09662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1164533..1165080 | 11..557 | 99 | -> | Plus |
| arm_2L | 1165139..1165512 | 558..931 | 99 | | Plus |
BS09662.complete Sequence
1796 bp assembled on 2007-10-26
GenBank Submission: FJ636461
> BS09662.complete
GAAGTTATCAGTCGACATGCCCACCTTAATAGCGCTGGATGCATCGCTAT
CGATGCTGCGCCCGGTGCCGGGAAGAAATGAGCACACCTACCAGTCGCTG
GCCACCAAGGGCATCCAGCATCTGCTGGACAATCTCACGGCGGCCGGCAA
ATTGGAGCACGTTGCTCTGCTCTCCTATTCGACGACGGCGGAACTGAAGG
TGGACTTCACGCGGGACTACGACCAGGTGCGGCAGGCGGTCAAGAAGGTG
GAGCCCGTGGACAAGGCCTGCCTGATGAGCATGCTCAAGGCGGTGGTGTC
CATAATGTCGCCGTGGGGCAACCAGAACATCCTGCAGGTGGTTGTCTTTA
CGGACTGCGGCCTCGGCTTTGGCAACACCTCGATCACGGGCTTCCTGGAG
GCCTACGCCGAAAAGGAGTCGGAGCCGGAGTTCGGCTTCCTGAAGACTCT
GGCCAACTACAACCTGAATTTCATCTGCCTGGGCCTGCACGGCGATTACT
ACTTCACCAGGGGATTGGCGGTGTACCAGCAGCTGCTGGACAAGGTCTCA
CTGAAGGGCCAGCTCTTCATGACAAAGCCCGCCAAGAGCAGCGATGCAGT
CGAGGGAAATCCCAATCCCAACCCGAACCCCAGCCACAAAAGCGAACTGG
GCCGCACTACGGTCTTCGAACTAATTGAACGTCTCTGCGAGGCCAGCTAC
AAGAGTTCGGAGGTGACCCTGAAATGCGGCAGCTACTTCCGCATGGAGGC
ATCTGTTCTGCTCTGGCCACCGACGGCTCCGTATGAGCAAAAGTCCCACA
TATTCGGCCGAGAACCCACCATTCGCCACACAGACCAGAAGATTGAGGTG
TGTGGCTTCCTGTCCCTTTCGGACATTGGATCACCGGCCACCCTGAGTCG
ACACTGGGTGCTGCCCAAAGTGGAGCGGGAGAAGAGCGGCAGCAGTCGGA
GGTCTGGAAACCTGAGCGCAGCAGCCAAGCCACCGAAGCTCAATCTAGAT
ACCAGCAATCCCAACTACGAGCTGGAGAAGCTGGAAGCCGATATCAAAGA
GTTTTACGCCAAGGATTCAAAAGACACGGAGGAAAGTGGCGACGACGATG
TGACCATTGTCTTGAAACCCGGCCCCCAGACAGAGCAACAAAAAGAAAAC
TTGTGCGTCCTCCTTCACGGAGCCCTCAAAATGGAGAACATGGCAGCTCT
GGTTCGAGTGGGTGACAAGTGGTACGGATTCATATATGCATTCACCGACA
GCAAGAAGAAGTCAAACCTGATGCTGAACATACTTCCACCCGGCACGAAC
GTGATTCCCTGGCTAGGAGACCTGGAATCGCTGGGCTTCCCCGAGGATTT
GGCGCCCGGAGAGACGGCCAGTTTTCCGGTGCGTGCCGACCGCAGATCTT
ATTCGCAGAGCAGTGTGGTGTGGATACGACAGGCTAGCCTGCAGTCCGAC
GTCCAGAAGGTACTGCGACACGCCAAGAAGATGCCCGACAAGACGCAGCA
CTTCTACAAGGAGCTCAATCGCATCCGCCGCGCTGCCCTGGCGCTGGGAT
TCGTCGAGTTGCTGGAGGCTTTGGCCATGCTGCTGGAGAAGGAGTGCGCC
CATCTCAGCCTGAACGGAGCCAGCAACGACTGCACCCTGCAGCTGCAGCA
CGCGGCTACGGAGTTGCGGAAGACCTCGAACAGAGACATGAAGTCCATGA
TTGTTCCGCTCCAGAAAGTTGGTGCATCGGATGCGGGCAGCACGGCTGCC
ACGGCTCCTGCTCCTGCATACATGTATTGAAAGCTTTCTAGACCAT
BS09662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-RA | 1764 | CG4785-PA | 1..1764 | 17..1780 | 8820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-RA | 1925 | CG4785-RA | 94..1863 | 13..1782 | 8835 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1165138..1166363 | 557..1782 | 6130 | 100 | Plus |
| 2L | 23513712 | 2L | 1164536..1165081 | 13..558 | 2715 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-27 10:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 892..1008 | 1536..1654 | 121 | 58 | Plus |
BS09662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:26 Download gff for
BS09662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 1..1764 | 17..1780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:32 Download gff for
BS09662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 59..1849 | 5..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:32 Download gff for
BS09662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 98..1860 | 17..1779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:43 Download gff for
BS09662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 71..1833 | 17..1779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:32 Download gff for
BS09662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS14-RA | 98..1860 | 17..1779 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:32 Download gff for
BS09662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1164540..1165080 | 17..557 | 100 | -> | Plus |
| 2L | 1165139..1166360 | 558..1779 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:32 Download gff for
BS09662.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1164540..1165080 | 17..557 | 100 | -> | Plus |
| arm_2L | 1165139..1166360 | 558..1779 | 100 | | Plus |
BS09662.pep Sequence
Translation from 16 to 1779
> BS09662.pep
MPTLIALDASLSMLRPVPGRNEHTYQSLATKGIQHLLDNLTAAGKLEHVA
LLSYSTTAELKVDFTRDYDQVRQAVKKVEPVDKACLMSMLKAVVSIMSPW
GNQNILQVVVFTDCGLGFGNTSITGFLEAYAEKESEPEFGFLKTLANYNL
NFICLGLHGDYYFTRGLAVYQQLLDKVSLKGQLFMTKPAKSSDAVEGNPN
PNPNPSHKSELGRTTVFELIERLCEASYKSSEVTLKCGSYFRMEASVLLW
PPTAPYEQKSHIFGREPTIRHTDQKIEVCGFLSLSDIGSPATLSRHWVLP
KVEREKSGSSRRSGNLSAAAKPPKLNLDTSNPNYELEKLEADIKEFYAKD
SKDTEESGDDDVTIVLKPGPQTEQQKENLCVLLHGALKMENMAALVRVGD
KWYGFIYAFTDSKKKSNLMLNILPPGTNVIPWLGDLESLGFPEDLAPGET
ASFPVRADRRSYSQSSVVWIRQASLQSDVQKVLRHAKKMPDKTQHFYKEL
NRIRRAALALGFVELLEALAMLLEKECAHLSLNGASNDCTLQLQHAATEL
RKTSNRDMKSMIVPLQKVGASDAGSTAATAPAPAYMY*
BS09662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-PA | 587 | CG4785-PA | 1..587 | 1..587 | 3032 | 100 | Plus |
