Clone Sequence Records
BS09664.complete Sequence
1859 bp assembled on 2009-12-07
GenBank Submission: KX805059
> BS09664.complete
GAAGTTATCAGTCGACATGGCACAACCCCAACCACCGGCGTACGAAAACA
AAAACATCTACGCAACTCTGCCGCGCACCCAACGCGGCCAACCCATCGTT
TTGGGTGCCGATCCCAAGGGCAAGAACTTCCTGTACACCAATGGAAACTC
TGTGATCATCCGGAACATCGAGAATCCAGCCATTGCCGATGTCTACACGG
AGCACTCGTGTGCAGTGAACGTGGCCAAGTACTCGCCCAGCGGATTTTAT
ATTGCATCTGGTGACGCCTCCGGCAAGATTCGCATTTGGGACACGGTCAA
CAAGGAGCACCTGCTTAAAAATGAGTTCCAGCCCATTGCAGGACCCATCA
AGGATATTAGCTGGTCGCCAGACAATCAGCGCATCGTTGCCGTGGGTGAA
GGACGCGAACGTTTCGGTCATGTCTTTATGTCTGAAACCGGCACGTCTGT
GGGCGAGATCAGTGGCCAGTCCAAGTCTATTAACTCGGCGGACTTCCGGC
CAGCCAGGCCATTCCGCATTGTTACGGGCAGCGAAGACAATACTATCGCC
GTGTTCGAGGGACCCCCGTTCAAGTTCAAGATGACCAAGCAGGATCACTC
TCGCTTCGTCCAGGCTGTGCGCTACTCGCCCGATGGCAAATTCTTCGCCT
CCGCCGGCTTTGATGGCAAAGTCTTTCTGTACGATGGCACCAGCTCTGAA
CTGGTGGGCGAATTTGGATCTCCTGCCCACAAGGGCGGCGTTTACGCATT
GGCCTGGAAACCAGACAGCACCCAACTGCTAACCTGCTCCGGCGACAAGA
CGTGCCGCCTTTGGACAGTGGAGTCGCGCGAGCTGGTTAGCGAGTTTGTG
ATGGGCACCACTGTGGACGACCAGCAGGTGTCCTGCTTGTGGCAAGGAGA
CAACCTAATCACCGTCTCGCTTTCGGGCGTGATCACCTACCTCAATGTGG
CGGATCCCTCGAAACCGCTGCGTGTGGTGAAGGGCCACAATAAGCCCATC
ACCGTGCTGGGACTGAGCGATGACCGCAGCACCATATACACGGGTAGCCA
CGATGGCGTGGTGACCAACTGGAACTCGGGCAGCGGCACCAACGATCGCA
TCACGGGCACTGGACACGGAAACCAGATCAACGGCATTGCCGCCTGGGGT
GACTTTGTCTATACCTGTGGCATCGACGACAGCCTACGCCAGTTCAGCGT
GGAGGGCAACTCCTACACGGACTATGTGGTGAAGCTTAACTGCCAGCCAC
GTGGCTTGGCCATTTTGCGCAACGAGAACATCATTGCACTTGCTTGCATC
AAAGAGTTGACTCTCGTGCAGGACCAGAAGAAGATCTTTTCGCTGCCCAT
TAAGTACGAGGCTAGCTCGATTGCCGTTAATGCGGACACTTCCGATGTTG
CTGTCGGCGGGGATGACCAAAAGTTGCACATCTACACCCTGAAGGGCGGA
GTATTGGAGCCCAAAGTGGAGCTGGATCACTTGGGAGCTGTCACGGATGT
TTCTTATTCGCCGGACTTGAAGTATTTGGTGGCTTGCGATGCCCATCGCA
AGGTGGTGCTCTACTCAGTGGAGGAGTACAAGCCTGCACACAACAAGGAG
TGGGGCTTCCACAGTGCTCGCGTAAATACGGTGGCCTGGTCGCCCAACTC
GCTGCTGGTTGCTAGTGGATCATTGGACACTACTATCATTATCTGGTCCG
TGGCCAATCCGGCCAAACATACTATCATCAAGAATGCCCATCCGCAGTCG
CAAATCACTCGGTTGGTCTGGCTGGACAATAACACTGTGATCTCCACCGG
ACAGGACTGCAACACCAAGGTGTGGCACGTGGAAAACATTTAAAAGCTTT
CTAGACCAT
BS09664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flr-RA | 1827 | CG10724-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
flr-RB | 1815 | CG10724-PB | 17..1815 | 45..1843 | 8980 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flr-RA | 2275 | CG10724-RA | 100..1927 | 17..1844 | 9140 | 100 | Plus |
flr-RB | 2210 | CG10724-RB | 63..1862 | 45..1844 | 8985 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13414660..13415720 | 522..1582 | 5290 | 99.9 | Plus |
3L | 28110227 | 3L | 13414336..13414601 | 263..528 | 1330 | 100 | Plus |
3L | 28110227 | 3L | 13415774..13415927 | 1580..1733 | 770 | 100 | Plus |
3L | 28110227 | 3L | 13413317..13413438 | 51..172 | 610 | 100 | Plus |
3L | 28110227 | 3L | 13415995..13416105 | 1734..1844 | 555 | 100 | Plus |
3L | 28110227 | 3L | 13414056..13414148 | 171..263 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:31:17 has no hits.
BS09664.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:59 Download gff for
BS09664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10724-RA | 113..1937 | 17..1841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:02 Download gff for
BS09664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
flr-RA | 100..1924 | 17..1841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:15 Download gff for
BS09664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10724-RA | 113..1937 | 17..1841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:09 Download gff for
BS09664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
flr-RA | 100..1924 | 17..1841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:09 Download gff for
BS09664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13414337..13414600 | 264..527 | 100 | -> | Plus |
3L | 13414058..13414148 | 173..263 | 100 | -> | Plus |
3L | 13412942..13412975 | 17..50 | 100 | -> | Plus |
3L | 13413317..13413438 | 51..172 | 100 | -> | Plus |
3L | 13414666..13415720 | 528..1582 | 100 | -> | Plus |
3L | 13415777..13415927 | 1583..1733 | 100 | -> | Plus |
3L | 13415995..13416102 | 1734..1841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:02 Download gff for
BS09664.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13406042..13406075 | 17..50 | 100 | -> | Plus |
arm_3L | 13406417..13406538 | 51..172 | 100 | -> | Plus |
arm_3L | 13407158..13407248 | 173..263 | 100 | -> | Plus |
arm_3L | 13407437..13407700 | 264..527 | 100 | -> | Plus |
arm_3L | 13407766..13408820 | 528..1582 | 100 | -> | Plus |
arm_3L | 13408877..13409027 | 1583..1733 | 100 | -> | Plus |
arm_3L | 13409095..13409202 | 1734..1841 | 100 | | Plus |
BS09664.3prime Sequence
940 bp (865 high quality bases) assembled on 2006-04-19
> BS09664.3prime
ATGGTCTAGAAAGCTTTTAAATGTTTTCCACGTGCCACACCTTGGTGTTG
CAGTCCTGTCCGGTGGAGATCACAGTGTTATTGTCCAGCCAGACCAACCG
AGTGATTTGCGACTGCGGATGGGCATTCTTGATGATAGTATGTTTGGCCG
GATTGGCCACGGACCAGATAATGATAGTAGTGTCCAATGATCCACTAGCA
ACCAGCAGCGAGTTGGGCGACCAGGCCACCGTATTTACGCGAGCACTGTG
GAAGCCCCACTCCTTGTTGTGTGCAGGCTTGTACTCCTCCACTGAGTAGA
GCACCACCTTGCGATGGGCATCGCAAGCCACCAAATACTTCAAGTCCGGC
GAATAAGAAACATCCGTGACAGCTCCCAAGTGATCCAGCTCCACTTTGGG
CTCCAATACTCCGCCCTTCAGGGTGTAGATGTGCAACTTTTGGTCATCCC
CGCCGACAGCAACATCGGAAGTGTCCGCATTAACGGCAATCGAGCTAGCC
TCGTACTTAATGGGCAGCGAAAAGATCTTCTTCTGGTCCTGCACGAGAGT
CAACTCTTTGATGCAAGCAAGTGCAATGATGTTCTCGTTGCGCAAAATGG
CCAAGCCACGTGGCTGGCAGTTAAGCTTCACCACATAGTCCGTGTAGGAG
TTGCCCTCCACGCTGAACTGGCGTAGGCTGTCGTCGATGCCACAGGTATA
GACAAAGTCACCCCAGGCGGCAATGCCGTTGATCTGGTTTCCGTGTCCAG
TGCCCGTGATGCGATCGTTGGTGCCGCTGCCCGAGTTCCAGTTGGTCACC
ACGCCATCGTGGCTACCCGTGTATATGGTGCTGCGGTCATCGCTCAGTCC
CAGCACGGTGATGGGCTTATTGTGGCCCTTCCCACACGCAGCGGTTTCGA
GGGATCGCCACATTGAGGTAGGTGATCACGCCCGAAGCGA
BS09664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10724-PA | 1827 | CG10724-RA | 963..1827 | 881..17 | 4325 | 100 | Minus |
CG10724-PB | 1815 | CG10724-RB | 951..1815 | 881..17 | 4325 | 100 | Minus |
CG10724-PA | 1827 | CG10724-RA | 906..936 | 936..906 | 155 | 100 | Minus |
CG10724-PB | 1815 | CG10724-RB | 894..924 | 936..906 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flr-RB | 2210 | CG10724-RB | 940..1862 | 936..16 | 4565 | 99.8 | Minus |
flr-RA | 2275 | CG10724-RA | 1005..1927 | 936..16 | 4565 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13415060..13415720 | 936..278 | 3205 | 99.7 | Minus |
3L | 28110227 | 3L | 13415774..13415927 | 280..127 | 770 | 100 | Minus |
3L | 28110227 | 3L | 13415995..13416105 | 126..16 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:10:51 has no hits.
BS09664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:35 Download gff for
BS09664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10724-PB | 890..1815 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:58 Download gff for
BS09664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10724-PB | 890..1815 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:20:58 Download gff for
BS09664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
flr-RA | 1001..1930 | 13..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:09:10 Download gff for
BS09664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
flr-RA | 1001..1930 | 13..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:09:10 Download gff for
BS09664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13415056..13415720 | 278..939 | 99 | -> | Minus |
3L | 13415777..13415927 | 127..277 | 100 | -> | Minus |
3L | 13415995..13416108 | 13..126 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:20:58 Download gff for
BS09664.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13408156..13408820 | 278..939 | 99 | -> | Minus |
arm_3L | 13408877..13409027 | 127..277 | 100 | -> | Minus |
arm_3L | 13409095..13409208 | 13..126 | 99 | | Minus |
BS09664.5prime Sequence
950 bp (754 high quality bases) assembled on 2006-04-19
> BS09664.5prime
GAAGTTATCAGTCGACATGGCACAACCCCAACCACCGGCGTACGAAAACA
AAAACATCTACGCAACTCTGCCGCGCACCCAACGCGGCCAACCCATCGTT
TTGGGTGCCGATCCCAAGGGCAAGAACTTCCTGTACACCAATGGAAACTC
TGTGATCATCCGGAACATCGAGAATCCAGCCATTGCCGATGTCTACACGG
AGCACTCGTGTGCAGTGAACGTGGCCAAGTACTCGCCCAGCGGATTTTAT
ATTGCATCTGGTGACGCCTCCGGCAAGATTCGCATTTGGGACACGGTCAA
CAAGGAGCACCTGCTTAAAAATGAGTTCCAGCCCATTGCAGGACCCATCA
AGGATATTAGCTGGTCGCCAGACAATCAGCGCATCGTTGCCGTGGGTGAA
GGACGCGAACGTTTCGGTCATGTCTTTATGTCTGAAACCGGCACGTCTGT
GGGCGAGATCAGTGGCCAGTCCAAGTCTATTAACTCGGCGGACTTCCGGC
CAGCCAGGCCATTCCGCATTGTTACGGGCAGCGAAGACAATACTATCGCC
GTGTTCGAGGGACCCCCGTTCAAGTTCAAGATGACCAAGCAGGATCACTC
TCGCTTCGTCCAGGCTGTGCGCTACTCGCCCGATGGCAAATTCTTCGCCT
CCGCCGGCTTTGATGGCAAAGTCTTTCTGTACGATGGCACCAGCTCTGAA
CTGGTGGGCGAATTTGGATCTCCTGCCCACAAGGGCGGCGTTTACGCATT
GGCCTGGAAACCAGACAGCACCCAACTGCTAACCTGCTCCGGCGACAAGA
CGTGCCGCCTTTGGACAGTGGAGTCGCGCGAGCTGGTTAGCGAGTTTGTG
ATGGGCACCACTGTGGACGACCAGCAGGTGTCCTGCTTGTGGCAAGGAGA
CAACCTAATCACCGTCTCGCTTTCCGGCGTGATCACCTACCTCAATGTGG
BS09664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10724-PA | 1827 | CG10724-RA | 1..934 | 17..950 | 4645 | 99.8 | Plus |
CG10724-PB | 1815 | CG10724-RB | 17..922 | 45..950 | 4480 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flr-RA | 2275 | CG10724-RA | 100..1033 | 17..950 | 4655 | 99.9 | Plus |
flr-RB | 2210 | CG10724-RB | 63..968 | 45..950 | 4500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13414660..13415088 | 522..950 | 2115 | 99.5 | Plus |
3L | 28110227 | 3L | 13414336..13414601 | 263..528 | 1330 | 100 | Plus |
3L | 28110227 | 3L | 13413317..13413438 | 51..172 | 610 | 100 | Plus |
3L | 28110227 | 3L | 13414056..13414148 | 171..263 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:23:55 has no hits.
BS09664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:36 Download gff for
BS09664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10724-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:01 Download gff for
BS09664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10724-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:37:48 Download gff for
BS09664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
flr-RA | 91..1033 | 7..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:22 Download gff for
BS09664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
flr-RA | 91..1033 | 7..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:22 Download gff for
BS09664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13413317..13413438 | 51..172 | 100 | -> | Plus |
3L | 13414058..13414148 | 173..263 | 100 | -> | Plus |
3L | 13414337..13414600 | 264..527 | 100 | -> | Plus |
3L | 13414666..13415088 | 528..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:37:48 Download gff for
BS09664.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13406417..13406538 | 51..172 | 100 | -> | Plus |
arm_3L | 13407158..13407248 | 173..263 | 100 | -> | Plus |
arm_3L | 13407437..13407700 | 264..527 | 100 | -> | Plus |
arm_3L | 13407766..13408188 | 528..950 | 99 | | Plus |
BS09664.pep Sequence
Translation from 16 to 1842
> BS09664.pep
MAQPQPPAYENKNIYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRN
IENPAIADVYTEHSCAVNVAKYSPSGFYIASGDASGKIRIWDTVNKEHLL
KNEFQPIAGPIKDISWSPDNQRIVAVGEGRERFGHVFMSETGTSVGEISG
QSKSINSADFRPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQDHSRFVQA
VRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSPAHKGGVYALAWKPD
STQLLTCSGDKTCRLWTVESRELVSEFVMGTTVDDQQVSCLWQGDNLITV
SLSGVITYLNVADPSKPLRVVKGHNKPITVLGLSDDRSTIYTGSHDGVVT
NWNSGSGTNDRITGTGHGNQINGIAAWGDFVYTCGIDDSLRQFSVEGNSY
TDYVVKLNCQPRGLAILRNENIIALACIKELTLVQDQKKIFSLPIKYEAS
SIAVNADTSDVAVGGDDQKLHIYTLKGGVLEPKVELDHLGAVTDVSYSPD
LKYLVACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTVAWSPNSLLVAS
GSLDTTIIIWSVANPAKHTIIKNAHPQSQITRLVWLDNNTVISTGQDCNT
KVWHVENI*
BS09664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flr-PA | 608 | CG10724-PA | 1..608 | 1..608 | 3210 | 100 | Plus |
flr-PB | 604 | CG10724-PB | 6..604 | 10..608 | 3151 | 99.7 | Plus |
Nle-PA | 488 | CG2863-PA | 117..486 | 150..603 | 240 | 23.3 | Plus |
Poc1-PA | 391 | CG10191-PA | 7..305 | 53..360 | 238 | 23.3 | Plus |
Poc1-PB | 403 | CG10191-PB | 7..305 | 53..360 | 238 | 23.3 | Plus |