Clone BS09664 Report

Search the DGRC for BS09664

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptflr-RA
Protein status:BS09664.pep: full length peptide match
Sequenced Size:1859

Clone Sequence Records

BS09664.complete Sequence

1859 bp assembled on 2009-12-07

GenBank Submission: KX805059

> BS09664.complete
GAAGTTATCAGTCGACATGGCACAACCCCAACCACCGGCGTACGAAAACA
AAAACATCTACGCAACTCTGCCGCGCACCCAACGCGGCCAACCCATCGTT
TTGGGTGCCGATCCCAAGGGCAAGAACTTCCTGTACACCAATGGAAACTC
TGTGATCATCCGGAACATCGAGAATCCAGCCATTGCCGATGTCTACACGG
AGCACTCGTGTGCAGTGAACGTGGCCAAGTACTCGCCCAGCGGATTTTAT
ATTGCATCTGGTGACGCCTCCGGCAAGATTCGCATTTGGGACACGGTCAA
CAAGGAGCACCTGCTTAAAAATGAGTTCCAGCCCATTGCAGGACCCATCA
AGGATATTAGCTGGTCGCCAGACAATCAGCGCATCGTTGCCGTGGGTGAA
GGACGCGAACGTTTCGGTCATGTCTTTATGTCTGAAACCGGCACGTCTGT
GGGCGAGATCAGTGGCCAGTCCAAGTCTATTAACTCGGCGGACTTCCGGC
CAGCCAGGCCATTCCGCATTGTTACGGGCAGCGAAGACAATACTATCGCC
GTGTTCGAGGGACCCCCGTTCAAGTTCAAGATGACCAAGCAGGATCACTC
TCGCTTCGTCCAGGCTGTGCGCTACTCGCCCGATGGCAAATTCTTCGCCT
CCGCCGGCTTTGATGGCAAAGTCTTTCTGTACGATGGCACCAGCTCTGAA
CTGGTGGGCGAATTTGGATCTCCTGCCCACAAGGGCGGCGTTTACGCATT
GGCCTGGAAACCAGACAGCACCCAACTGCTAACCTGCTCCGGCGACAAGA
CGTGCCGCCTTTGGACAGTGGAGTCGCGCGAGCTGGTTAGCGAGTTTGTG
ATGGGCACCACTGTGGACGACCAGCAGGTGTCCTGCTTGTGGCAAGGAGA
CAACCTAATCACCGTCTCGCTTTCGGGCGTGATCACCTACCTCAATGTGG
CGGATCCCTCGAAACCGCTGCGTGTGGTGAAGGGCCACAATAAGCCCATC
ACCGTGCTGGGACTGAGCGATGACCGCAGCACCATATACACGGGTAGCCA
CGATGGCGTGGTGACCAACTGGAACTCGGGCAGCGGCACCAACGATCGCA
TCACGGGCACTGGACACGGAAACCAGATCAACGGCATTGCCGCCTGGGGT
GACTTTGTCTATACCTGTGGCATCGACGACAGCCTACGCCAGTTCAGCGT
GGAGGGCAACTCCTACACGGACTATGTGGTGAAGCTTAACTGCCAGCCAC
GTGGCTTGGCCATTTTGCGCAACGAGAACATCATTGCACTTGCTTGCATC
AAAGAGTTGACTCTCGTGCAGGACCAGAAGAAGATCTTTTCGCTGCCCAT
TAAGTACGAGGCTAGCTCGATTGCCGTTAATGCGGACACTTCCGATGTTG
CTGTCGGCGGGGATGACCAAAAGTTGCACATCTACACCCTGAAGGGCGGA
GTATTGGAGCCCAAAGTGGAGCTGGATCACTTGGGAGCTGTCACGGATGT
TTCTTATTCGCCGGACTTGAAGTATTTGGTGGCTTGCGATGCCCATCGCA
AGGTGGTGCTCTACTCAGTGGAGGAGTACAAGCCTGCACACAACAAGGAG
TGGGGCTTCCACAGTGCTCGCGTAAATACGGTGGCCTGGTCGCCCAACTC
GCTGCTGGTTGCTAGTGGATCATTGGACACTACTATCATTATCTGGTCCG
TGGCCAATCCGGCCAAACATACTATCATCAAGAATGCCCATCCGCAGTCG
CAAATCACTCGGTTGGTCTGGCTGGACAATAACACTGTGATCTCCACCGG
ACAGGACTGCAACACCAAGGTGTGGCACGTGGAAAACATTTAAAAGCTTT
CTAGACCAT

BS09664.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
flr-RA 1827 CG10724-PA 1..1827 17..1843 9135 100 Plus
flr-RB 1815 CG10724-PB 17..1815 45..1843 8980 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
flr-RA 2275 CG10724-RA 100..1927 17..1844 9140 100 Plus
flr-RB 2210 CG10724-RB 63..1862 45..1844 8985 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13414660..13415720 522..1582 5290 99.9 Plus
3L 28110227 3L 13414336..13414601 263..528 1330 100 Plus
3L 28110227 3L 13415774..13415927 1580..1733 770 100 Plus
3L 28110227 3L 13413317..13413438 51..172 610 100 Plus
3L 28110227 3L 13415995..13416105 1734..1844 555 100 Plus
3L 28110227 3L 13414056..13414148 171..263 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:31:17 has no hits.

BS09664.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:59 Download gff for BS09664.complete
Subject Subject Range Query Range Percent Splice Strand
CG10724-RA 113..1937 17..1841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:02 Download gff for BS09664.complete
Subject Subject Range Query Range Percent Splice Strand
flr-RA 100..1924 17..1841 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:15 Download gff for BS09664.complete
Subject Subject Range Query Range Percent Splice Strand
CG10724-RA 113..1937 17..1841 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:09 Download gff for BS09664.complete
Subject Subject Range Query Range Percent Splice Strand
flr-RA 100..1924 17..1841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:09 Download gff for BS09664.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13414337..13414600 264..527 100 -> Plus
3L 13414058..13414148 173..263 100 -> Plus
3L 13412942..13412975 17..50 100 -> Plus
3L 13413317..13413438 51..172 100 -> Plus
3L 13414666..13415720 528..1582 100 -> Plus
3L 13415777..13415927 1583..1733 100 -> Plus
3L 13415995..13416102 1734..1841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:02 Download gff for BS09664.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13406042..13406075 17..50 100 -> Plus
arm_3L 13406417..13406538 51..172 100 -> Plus
arm_3L 13407158..13407248 173..263 100 -> Plus
arm_3L 13407437..13407700 264..527 100 -> Plus
arm_3L 13407766..13408820 528..1582 100 -> Plus
arm_3L 13408877..13409027 1583..1733 100 -> Plus
arm_3L 13409095..13409202 1734..1841 100   Plus

BS09664.3prime Sequence

940 bp (865 high quality bases) assembled on 2006-04-19

> BS09664.3prime
ATGGTCTAGAAAGCTTTTAAATGTTTTCCACGTGCCACACCTTGGTGTTG
CAGTCCTGTCCGGTGGAGATCACAGTGTTATTGTCCAGCCAGACCAACCG
AGTGATTTGCGACTGCGGATGGGCATTCTTGATGATAGTATGTTTGGCCG
GATTGGCCACGGACCAGATAATGATAGTAGTGTCCAATGATCCACTAGCA
ACCAGCAGCGAGTTGGGCGACCAGGCCACCGTATTTACGCGAGCACTGTG
GAAGCCCCACTCCTTGTTGTGTGCAGGCTTGTACTCCTCCACTGAGTAGA
GCACCACCTTGCGATGGGCATCGCAAGCCACCAAATACTTCAAGTCCGGC
GAATAAGAAACATCCGTGACAGCTCCCAAGTGATCCAGCTCCACTTTGGG
CTCCAATACTCCGCCCTTCAGGGTGTAGATGTGCAACTTTTGGTCATCCC
CGCCGACAGCAACATCGGAAGTGTCCGCATTAACGGCAATCGAGCTAGCC
TCGTACTTAATGGGCAGCGAAAAGATCTTCTTCTGGTCCTGCACGAGAGT
CAACTCTTTGATGCAAGCAAGTGCAATGATGTTCTCGTTGCGCAAAATGG
CCAAGCCACGTGGCTGGCAGTTAAGCTTCACCACATAGTCCGTGTAGGAG
TTGCCCTCCACGCTGAACTGGCGTAGGCTGTCGTCGATGCCACAGGTATA
GACAAAGTCACCCCAGGCGGCAATGCCGTTGATCTGGTTTCCGTGTCCAG
TGCCCGTGATGCGATCGTTGGTGCCGCTGCCCGAGTTCCAGTTGGTCACC
ACGCCATCGTGGCTACCCGTGTATATGGTGCTGCGGTCATCGCTCAGTCC
CAGCACGGTGATGGGCTTATTGTGGCCCTTCCCACACGCAGCGGTTTCGA
GGGATCGCCACATTGAGGTAGGTGATCACGCCCGAAGCGA

BS09664.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10724-PA 1827 CG10724-RA 963..1827 881..17 4325 100 Minus
CG10724-PB 1815 CG10724-RB 951..1815 881..17 4325 100 Minus
CG10724-PA 1827 CG10724-RA 906..936 936..906 155 100 Minus
CG10724-PB 1815 CG10724-RB 894..924 936..906 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
flr-RB 2210 CG10724-RB 940..1862 936..16 4565 99.8 Minus
flr-RA 2275 CG10724-RA 1005..1927 936..16 4565 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13415060..13415720 936..278 3205 99.7 Minus
3L 28110227 3L 13415774..13415927 280..127 770 100 Minus
3L 28110227 3L 13415995..13416105 126..16 555 100 Minus
Blast to na_te.dros performed on 2015-02-06 16:10:51 has no hits.

BS09664.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:35 Download gff for BS09664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10724-PB 890..1815 17..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:28:58 Download gff for BS09664.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10724-PB 890..1815 17..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:20:58 Download gff for BS09664.3prime
Subject Subject Range Query Range Percent Splice Strand
flr-RA 1001..1930 13..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:09:10 Download gff for BS09664.3prime
Subject Subject Range Query Range Percent Splice Strand
flr-RA 1001..1930 13..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:09:10 Download gff for BS09664.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13415056..13415720 278..939 99 -> Minus
3L 13415777..13415927 127..277 100 -> Minus
3L 13415995..13416108 13..126 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:20:58 Download gff for BS09664.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13408156..13408820 278..939 99 -> Minus
arm_3L 13408877..13409027 127..277 100 -> Minus
arm_3L 13409095..13409208 13..126 99   Minus

BS09664.5prime Sequence

950 bp (754 high quality bases) assembled on 2006-04-19

> BS09664.5prime
GAAGTTATCAGTCGACATGGCACAACCCCAACCACCGGCGTACGAAAACA
AAAACATCTACGCAACTCTGCCGCGCACCCAACGCGGCCAACCCATCGTT
TTGGGTGCCGATCCCAAGGGCAAGAACTTCCTGTACACCAATGGAAACTC
TGTGATCATCCGGAACATCGAGAATCCAGCCATTGCCGATGTCTACACGG
AGCACTCGTGTGCAGTGAACGTGGCCAAGTACTCGCCCAGCGGATTTTAT
ATTGCATCTGGTGACGCCTCCGGCAAGATTCGCATTTGGGACACGGTCAA
CAAGGAGCACCTGCTTAAAAATGAGTTCCAGCCCATTGCAGGACCCATCA
AGGATATTAGCTGGTCGCCAGACAATCAGCGCATCGTTGCCGTGGGTGAA
GGACGCGAACGTTTCGGTCATGTCTTTATGTCTGAAACCGGCACGTCTGT
GGGCGAGATCAGTGGCCAGTCCAAGTCTATTAACTCGGCGGACTTCCGGC
CAGCCAGGCCATTCCGCATTGTTACGGGCAGCGAAGACAATACTATCGCC
GTGTTCGAGGGACCCCCGTTCAAGTTCAAGATGACCAAGCAGGATCACTC
TCGCTTCGTCCAGGCTGTGCGCTACTCGCCCGATGGCAAATTCTTCGCCT
CCGCCGGCTTTGATGGCAAAGTCTTTCTGTACGATGGCACCAGCTCTGAA
CTGGTGGGCGAATTTGGATCTCCTGCCCACAAGGGCGGCGTTTACGCATT
GGCCTGGAAACCAGACAGCACCCAACTGCTAACCTGCTCCGGCGACAAGA
CGTGCCGCCTTTGGACAGTGGAGTCGCGCGAGCTGGTTAGCGAGTTTGTG
ATGGGCACCACTGTGGACGACCAGCAGGTGTCCTGCTTGTGGCAAGGAGA
CAACCTAATCACCGTCTCGCTTTCCGGCGTGATCACCTACCTCAATGTGG

BS09664.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10724-PA 1827 CG10724-RA 1..934 17..950 4645 99.8 Plus
CG10724-PB 1815 CG10724-RB 17..922 45..950 4480 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
flr-RA 2275 CG10724-RA 100..1033 17..950 4655 99.9 Plus
flr-RB 2210 CG10724-RB 63..968 45..950 4500 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13414660..13415088 522..950 2115 99.5 Plus
3L 28110227 3L 13414336..13414601 263..528 1330 100 Plus
3L 28110227 3L 13413317..13413438 51..172 610 100 Plus
3L 28110227 3L 13414056..13414148 171..263 465 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:23:55 has no hits.

BS09664.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:36 Download gff for BS09664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10724-PA 1..934 17..950 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:01 Download gff for BS09664.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10724-PA 1..934 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:37:48 Download gff for BS09664.5prime
Subject Subject Range Query Range Percent Splice Strand
flr-RA 91..1033 7..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:22 Download gff for BS09664.5prime
Subject Subject Range Query Range Percent Splice Strand
flr-RA 91..1033 7..950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:22 Download gff for BS09664.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13413317..13413438 51..172 100 -> Plus
3L 13414058..13414148 173..263 100 -> Plus
3L 13414337..13414600 264..527 100 -> Plus
3L 13414666..13415088 528..950 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:37:48 Download gff for BS09664.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13406417..13406538 51..172 100 -> Plus
arm_3L 13407158..13407248 173..263 100 -> Plus
arm_3L 13407437..13407700 264..527 100 -> Plus
arm_3L 13407766..13408188 528..950 99   Plus

BS09664.pep Sequence

Translation from 16 to 1842

> BS09664.pep
MAQPQPPAYENKNIYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRN
IENPAIADVYTEHSCAVNVAKYSPSGFYIASGDASGKIRIWDTVNKEHLL
KNEFQPIAGPIKDISWSPDNQRIVAVGEGRERFGHVFMSETGTSVGEISG
QSKSINSADFRPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQDHSRFVQA
VRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSPAHKGGVYALAWKPD
STQLLTCSGDKTCRLWTVESRELVSEFVMGTTVDDQQVSCLWQGDNLITV
SLSGVITYLNVADPSKPLRVVKGHNKPITVLGLSDDRSTIYTGSHDGVVT
NWNSGSGTNDRITGTGHGNQINGIAAWGDFVYTCGIDDSLRQFSVEGNSY
TDYVVKLNCQPRGLAILRNENIIALACIKELTLVQDQKKIFSLPIKYEAS
SIAVNADTSDVAVGGDDQKLHIYTLKGGVLEPKVELDHLGAVTDVSYSPD
LKYLVACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTVAWSPNSLLVAS
GSLDTTIIIWSVANPAKHTIIKNAHPQSQITRLVWLDNNTVISTGQDCNT
KVWHVENI*

BS09664.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
flr-PA 608 CG10724-PA 1..608 1..608 3210 100 Plus
flr-PB 604 CG10724-PB 6..604 10..608 3151 99.7 Plus
Nle-PA 488 CG2863-PA 117..486 150..603 240 23.3 Plus
Poc1-PA 391 CG10191-PA 7..305 53..360 238 23.3 Plus
Poc1-PB 403 CG10191-PB 7..305 53..360 238 23.3 Plus