Clone Sequence Records
BS09668.3prime Sequence
918 bp (787 high quality bases) assembled on 2006-04-19
> BS09668.3prime
ATGGTCTAGAAAGCTTCTACTTGGACTCCTCTAGATCTTCTTTGTAGAGT
TCCTTGAAGATGAGCTTTTGTATCTTGGTGCGTATGCGCAGCTTCTGGGC
TGCGGTCAGCTGCTTCATGTACGGATGTAGGCTGAGCAAGTAGTGGTAGT
CATCGTCCTCTGGTACGAGCGGAGTGTCCATTGTCGAGGAACCATTAAAA
TTGCTATCCTCGGAGAGACGCGGGCGCTTCAGCTTAAGGGCGGGTATCAG
TCCATTGGCGTAGGAGTGTTGAGTGAAGCTCAGGTGATCTCCGTTTCCTC
CTACAGCAGAGGTGGGTCCGAAATCCTCATTTCGGTCTTTGGCCGCAAGA
TGTGCTGCTGCCAGAGTGGCCAGCGGATGGTGTGCTTTGTTGTATAGAGG
CGGTGGCGACACAGATCTCTTGCCGCCCATTGGCGCTCCATTCGAGGATA
CAGATGACGCGGATGTGGTCGTTGCCGGCGCCAGAACAGCTGCTGAGCCC
GGTTGTTGTACTTGTGCGGATGTGGTGGTCACCATTGGCGGTGGAGAACA
GTGTGCGGCTGGTGGTTCCACTAGCACTTGTAGTGAGGGTGCCACTGGAG
ATGTCATTTGCTGTGGCGGAGGTGGCTTTCTGCTCAAGTCCTCCGCCTCC
TTTTCCAGCTCCATCAACTGAGCGCGGAGTAATCCTGCCTTAATTAAAGC
GTGCTGATGTGCCTCTTCTTGGGCTCGCAAAGCTCCGGTGGCCAGTGGTG
TGGTGCTAACTTGATTCATTTGATGCGCAGCCGGTGGCGTGGGCATCGTT
TCCTCCATGGTGGCTTCGCTAGCCTCTCCGTCCGCCTCCATTTCCTCCTC
GTCGTAATCCTCGTCGCTGTCCTGCAGACGACGTATTAGACCCGTTTGTT
AAATCCGGCTCCCCCACT
BS09668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PA | 1290 | CG6854-RA | 415..1290 | 892..17 | 4355 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-RB | 1717 | CG45071-RB | 616..1516 | 918..17 | 4455 | 99.7 | Minus |
CG45071-RA | 1867 | CG45071-RA | 766..1666 | 918..17 | 4455 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15109629..15110529 | 918..17 | 4430 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:44:50 has no hits.
BS09668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:40 Download gff for
BS09668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PA | 390..1290 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:05 Download gff for
BS09668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PA | 390..1290 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:37 Download gff for
BS09668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 766..1666 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:47 Download gff for
BS09668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45071-RA | 766..1666 | 17..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:47 Download gff for
BS09668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15109629..15110529 | 17..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:37 Download gff for
BS09668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15102729..15103629 | 17..918 | 99 | | Minus |
BS09668.5prime Sequence
898 bp (875 high quality bases) assembled on 2006-04-19
> BS09668.5prime
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAAGATCGTTCTCAAGGCCAAATGGAAGGGAC
TTCGAGACAATTTCCGTGTGGAGTACAAAAGGATACCGCGGGCGGATAAC
GGTGATTTTATGGTGGATCCGGCCACCTTTGAGTCCAAGTGGCTGCACTA
CTATGCATTGTTGTTTTTAACTGATCACATGCGTCATCGTTTGCCAAAGA
ACGAACAGGATCAGTCATTTTACTTCAGCCAGCAAAGCGAGGACTGTGAA
AAGACAGTGGTGGAGCCGGATTTAACAAACGGTCTAATACGTCGTCTGCA
GGACAGCGACGAGGATTACGACGAGGAGGAAATGGAGGCGGACGGAGAGG
CTAGCGAAGCCACCATGGAGGAAACGATGCCCACGCCACCGGCTGCGCAT
CAAATGAATCAAGTTAGCACCACACCACTGGCCACCGGAGCTTTGCGAGC
CCAAGAAGAGGCACATCAGCACGCTTTAATTAAGGCAGGATTACTCCGCG
CTCAGTTGATGGAGCTGGAAAAGGAGGCGGAGGACTTGAGCAGAAAGCCA
CCTCCGCCACAGCAAATGACATCTCCAGTGGCACCCTCACTACAAGTGCT
AGTGGAACCACCAGCCGCACACTGTTCTCCACCGCCAATGGTGACCACCA
CATCCGCACAAGTACAACAACCGGGCTCAGCAGCTGTTCTGGCGCCGGCA
ACGACCACATCCGCGTCATCTGTATCCTCGAATGGAGCGCCAATGGGC
BS09668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PA | 1290 | CG6854-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
CG6854-PB | 1872 | CG6854-RB | 1..154 | 17..170 | 770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-RA | 1867 | CG45071-RA | 377..1258 | 17..898 | 4410 | 100 | Plus |
CG45071-RB | 1717 | CG45071-RB | 529..1108 | 319..898 | 2900 | 100 | Plus |
CG45071-RB | 1717 | CG45071-RB | 377..530 | 17..170 | 770 | 100 | Plus |
CTPsyn-RB | 2423 | CG45070-RB | 246..399 | 17..170 | 770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15109537..15110121 | 314..898 | 2910 | 99.8 | Plus |
3L | 28110227 | 3L | 15108805..15108958 | 17..170 | 770 | 100 | Plus |
3L | 28110227 | 3L | 15109334..15109491 | 167..324 | 760 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:02:56 has no hits.
BS09668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:41 Download gff for
BS09668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:08 Download gff for
BS09668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:46 Download gff for
BS09668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 377..1258 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:48 Download gff for
BS09668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45071-RA | 377..1258 | 17..898 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:48 Download gff for
BS09668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15109338..15109487 | 171..320 | 100 | -> | Plus |
3L | 15108805..15108958 | 17..170 | 100 | -> | Plus |
3L | 15109544..15110121 | 321..898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:46 Download gff for
BS09668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15101905..15102058 | 17..170 | 100 | -> | Plus |
arm_3L | 15102438..15102587 | 171..320 | 100 | -> | Plus |
arm_3L | 15102644..15103221 | 321..898 | 100 | | Plus |
BS09668.complete Sequence
1322 bp assembled on 2008-08-15
GenBank Submission: KX805312
> BS09668.complete
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAAGATCGTTCTCAAGGCCAAATGGAAGGGAC
TTCGAGACAATTTCCGTGTGGAGTACAAAAGGATACCGCGGGCGGATAAC
GGTGATTTTATGGTGGATCCGGCCACCTTTGAGTCCAAGTGGCTGCACTA
CTATGCATTGTTGTTTTTAACTGATCACATGCGTCATCGTTTGCCAAAGA
ACGAACAGGATCAGTCATTTTACTTCAGCCAGCAAAGCGAGGACTGTGAA
AAGACAGTGGTGGAGCCGGATTTAACAAACGGTCTAATACGTCGTCTGCA
GGACAGCGACGAGGATTACGACGAGGAGGAAATGGAGGCGGACGGAGAGG
CTAGCGAAGCCACCATGGAGGAAACGATGCCCACGCCACCGGCTGCGCAT
CAAATGAATCAAGTTAGCACCACACCACTGGCCACCGGAGCTTTGCGAGC
CCAAGAAGAGGCACATCAGCACGCTTTAATTAAGGCAGGATTACTCCGCG
CTCAGTTGATGGAGCTGGAAAAGGAGGCGGAGGACTTGAGCAGAAAGCCA
CCTCCGCCACAGCAAATGACATCTCCAGTGGCACCCTCACTACAAGTGCT
AGTGGAACCACCAGCCGCACACTGTTCTCCACCGCCAATGGTGACCACCA
CATCCGCACAAGTACAACAACCGGGCTCAGCAGCTGTTCTGGCGCCGGCA
ACGACCACATCCGCGTCATCTGTATCCTCGAATGGAGCGCCAATGGGCGG
CAAGAGATCTGTGTCGCCACCGCCTCTATACAACAAAGCACACCATCCGC
TGGCCACTCTGGCAGCAGCACATCTTGCGGCCAAAGACCGAAATGAGGAT
TTCGGACCCACCTCTGCTGTAGGAGGAAACGGAGATCACCTGAGCTTCAC
TCAACACTCCTACGCCAATGGACTGATACCCGCCCTTAAGCTGAAGCGCC
CGCGTCTCTCCGAGGATAGCAATTTTAATGGTTCCTCGACAATGGACACT
CCGCTCGTACCAGAGGACGATGACTACCACTACTTGCTCAGCCTACATCC
GTACATGAAGCAGCTGACCGCAGCCCAGAAGCTGCGCATACGCACCAAGA
TACAAAAGCTCATCTTCAAGGAACTCTACAAAGAAGATCTAGAGGAGTCC
AAGTAGAAGCTTTCTAGACCAT
BS09668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-RA | 1290 | CG45071-PA | 1..1290 | 17..1306 | 6435 | 99.9 | Plus |
CG45071-RB | 1140 | CG45071-PB | 153..1140 | 319..1306 | 4925 | 99.9 | Plus |
CG45071-RB | 1140 | CG45071-PB | 1..154 | 17..170 | 770 | 100 | Plus |
CTPsyn-RB | 1872 | CG45070-PB | 1..154 | 17..170 | 770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-RA | 1867 | CG45071-RA | 377..1666 | 17..1306 | 6435 | 99.9 | Plus |
CG45071-RB | 1717 | CG45071-RB | 529..1516 | 319..1306 | 4925 | 99.9 | Plus |
CG45071-RB | 1717 | CG45071-RB | 377..530 | 17..170 | 770 | 100 | Plus |
CTPsyn-RB | 2423 | CG45070-RB | 246..399 | 17..170 | 770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15109537..15110529 | 314..1306 | 4935 | 99.8 | Plus |
3L | 28110227 | 3L | 15108805..15108958 | 17..170 | 770 | 100 | Plus |
3L | 28110227 | 3L | 15109334..15109491 | 167..324 | 760 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:42:21 has no hits.
BS09668.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:11 Download gff for
BS09668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RA | 375..1664 | 17..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:54 Download gff for
BS09668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 377..1666 | 17..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:17 Download gff for
BS09668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RA | 375..1664 | 17..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:33 Download gff for
BS09668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45071-RA | 377..1666 | 17..1306 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:33 Download gff for
BS09668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15108805..15108958 | 17..170 | 100 | -> | Plus |
3L | 15109338..15109487 | 171..320 | 100 | -> | Plus |
3L | 15109544..15110529 | 321..1306 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:54 Download gff for
BS09668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15101905..15102058 | 17..170 | 100 | -> | Plus |
arm_3L | 15102438..15102587 | 171..320 | 100 | -> | Plus |
arm_3L | 15102644..15103629 | 321..1306 | 99 | | Plus |
BS09668.pep Sequence
Translation from 16 to 1305
> BS09668.pep
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PKIVLKAKWKGLRDNFRVEYKRIPRADNGDFMVDPATFESKWLHYYALLF
LTDHMRHRLPKNEQDQSFYFSQQSEDCEKTVVEPDLTNGLIRRLQDSDED
YDEEEMEADGEASEATMEETMPTPPAAHQMNQVSTTPLATGALRAQEEAH
QHALIKAGLLRAQLMELEKEAEDLSRKPPPPQQMTSPVAPSLQVLVEPPA
AHCSPPPMVTTTSAQVQQPGSAAVLAPATTTSASSVSSNGAPMGGKRSVS
PPPLYNKAHHPLATLAAAHLAAKDRNEDFGPTSAVGGNGDHLSFTQHSYA
NGLIPALKLKRPRLSEDSNFNGSSTMDTPLVPEDDDYHYLLSLHPYMKQL
TAAQKLRIRTKIQKLIFKELYKEDLEESK*
BS09668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-PA | 429 | CG45071-PA | 1..429 | 1..429 | 2248 | 100 | Plus |
CG45071-PB | 379 | CG45071-PB | 1..379 | 1..429 | 1822 | 85.1 | Plus |
CTPsyn-PB | 623 | CG45070-PB | 1..54 | 1..54 | 281 | 96.3 | Plus |