Clone Sequence Records
BS09671.3prime Sequence
921 bp (845 high quality bases) assembled on 2006-04-19
> BS09671.3prime
ATGGTCTAGAAAGCTTCTACTTGCTGGTGTCCACAAGTATCTTGGGATTG
GCCACGTGAAAAACGCTGGGAACCATTCCCGCCAGAGTGGTGAACAAACT
TTCCGATATGTCATCAGGCAGTAGCAGTTGCAAGGTGCTTAACTCAGCTC
CGCCCCAAGATGCAGATTCTATCATAAACCCCTTGGCGCACTTAAACACC
AGCTCTGCTCTTCTGATGCACCACTGGACGGTCATGTCCTCGCTCATCTC
GTGACGCAGCAGAGCCGGAATGGTCAGCGTGGTGATGTCGTGCCTGCTGG
CTGTCTTTAGGATGTTTCGCAAACCCAAGATCACTGGATGCCGCGAGTTG
ATCTCACTGGGACTGTTGATGGGTTCGTCCGAAATCAGGTGAAAAATAAC
ATGCGTTTGCGAGAGATTCGAGTGCTTGGTGATGAAGAAGTCGCCTGTTT
TCAGTCTGGGCACGCTCTTCTTGGTCGGCGAGGGTGTGCCACTGCCCTCG
GCACTGCTGTTGCTAGTACTACTGCCACTGGAATCTTCAGTGGTCAAATT
CTTAATCTGCTTCTCGATCTTTTCCATCTGAACGTCTATTTGCTCAAAAT
GAAACTCGGTGGACTTGTTGGCATTTTTAATGATATTCTTGTTGGCCTGG
GCCTGAATCGATGGGGTCAGCACGACGACGCCGCAGAGGGAACTGGAGTA
CAATCCCAGAGCCATGTTAAGGCCATTAAGACTCTCCTCGGCGTGCAGCG
GACTGCAGAGCTCCGTGACATTGGCACTCAGGATGCGTATGTTGTGCATG
TGCTTCAGCTGGGAGCCCAGGTGAATGGTGAAGCTCTCCTCCATGGAGGG
CTGTTGCGAGACGAACATGGAGGAGCGGTTACCCAGCGGCGTGGCCACCG
GCGACACTTGAAACATCTGAC
BS09671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-PA | 1608 | CG9986-RA | 704..1608 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-RA | 2179 | CG9986-RA | 793..1697 | 921..17 | 4525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28606927..28607710 | 921..138 | 3920 | 100 | Minus |
| 3R | 32079331 | 3R | 28607768..28607890 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:22:46 has no hits.
BS09671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:46 Download gff for
BS09671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-PA | 704..1608 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:16 Download gff for
BS09671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-PA | 704..1608 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:07:58 Download gff for
BS09671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 793..1699 | 13..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:45 Download gff for
BS09671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 793..1699 | 13..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:45 Download gff for
BS09671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28606927..28607710 | 138..921 | 100 | -> | Minus |
| 3R | 28607770..28607892 | 13..137 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:07:58 Download gff for
BS09671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24432649..24433432 | 138..921 | 100 | -> | Minus |
| arm_3R | 24433492..24433614 | 13..137 | 98 | | Minus |
BS09671.5prime Sequence
872 bp (783 high quality bases) assembled on 2006-04-19
> BS09671.5prime
GAAGTTATCAGTCGACATGGACTCTACTGCCACTCGCACGCTGCCCTTTG
TGTACAAGTATAAAAATCATAAAGGCCAAGACTGCGAATCCCGGCTGGAC
ATCACTTTTCCCTTTGACCAGGAAAATCTGGAGGAGTGTATCACCCAGCT
GATGGCTCCCAACCAGATGGACCCTATGATGCGGTACCTGGACGAGAATA
TCAAACTCGAACGGGAGCTGCAGAAATTCGTGGATACGGAGCAGCAAAAT
TTCCTGGACGACCAAGCCGAAAAGCTACTCAAACAGGCGGCCAACGAGGA
GATGGACATCGAGGCCATTGTGCGGGACACAGAGAGGCTGTACAAGGAGG
AACTACTGCAATTTGCCGATCGTGTGGGTCCCAGCGATGCTGACATATTC
GCCCAGAGCTTCCATCGCCTGGTGCACTCTTCGTCCCTGGAGGACATACT
CAAGCGAGAGCGTGCATATGCCAAGGTGGTGTCCGACATGACCGATCTTA
TGGACAGCGAGGTGGAGACGTTGAACAACTCTCAGCAGCAGGAAATGGAT
AGCCAGATAAATCAGTTGGACATCACCACCACCTCGGAGGATATCAACAA
TCTGCTGGCGCAGCAGTACACCACGCAGAATTATGTGCGGAAGCGATACG
AATCCGAACTAGAAGCAATGATGGGTCATCAGAAGAATGAGTATCGAAAT
TGGATCACCAGTCAGGTCAGTCAGATGTTTCAAGTGTCGCCGGTGGCCAC
GCCGCTGGGTAACCGCTCCTCCATGTTCGTCTCGCAACAGCCCTCCATGG
AGGAGAGCTTCACCATTCACCTGGGCTCCCAGCTGAAGCACATGCACAAC
ATACGCATCCTGAGTGCAATGT
BS09671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-PA | 1608 | CG9986-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-RA | 2179 | CG9986-RA | 90..946 | 17..872 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28606411..28607074 | 204..867 | 3320 | 100 | Plus |
| 3R | 32079331 | 3R | 28606168..28606354 | 17..203 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:07:17 has no hits.
BS09671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:47 Download gff for
BS09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-PA | 1..857 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:17 Download gff for
BS09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-PA | 1..857 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:13:15 Download gff for
BS09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 84..946 | 8..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:06 Download gff for
BS09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 84..946 | 8..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:06 Download gff for
BS09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28606162..28606354 | 8..203 | 97 | -> | Plus |
| 3R | 28606411..28607080 | 204..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:13:15 Download gff for
BS09671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24431884..24432076 | 8..203 | 97 | -> | Plus |
| arm_3R | 24432133..24432802 | 204..872 | 99 | | Plus |
BS09671.complete Sequence
1640 bp (1640 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636462
> BS09671.complete
GAAGTTATCAGTCGACATGGACTCTACTGCCACTCGCACGCTGCCCTTTG
TGTACAAGTATAAAAATCATAAAGGCCAAGACTGCGAATCCCGGCTGGAC
ATCACTTTTCCCTTTGACCAGGAAAATCTGGAGGAGTGTATCACCCAGCT
GATGGCTCCCAACCAGATGGACCCTATGATGCGGTACCTGGACGAGAATA
TCAAACTCGAACGGGAGCTGCAGAAATTCGTGGATACGGAGCAGCAAAAT
TTCCTGGACGACCAAGCCGAAAAGCTACTCAAACAGGCGGCCAACGAGGA
GATGGACATCGAGGCCATTGTGCGGGACACAGAGAGGCTGTACAAGGAGG
AACTACTGCAATTTGCCGATCGTGTGGGTCCCAGCGATGCTGACATATTC
GCCCAGAGCTTCCATCGCCTGGTGCACTCTTCGTCCCTGGAGGACATACT
CAAGCGAGAGCGTGCATATGCCAAGGTGGTGTCCGACATGACCGATCTTA
TGGACAGCGAGGTGGAGACGTTGAACAACTCTCAGCAGCAGGAAATGGAT
AGCCAGATAAATCAGTTGGACATCACCACCACCTCGGAGGATATCAACAA
TCTGCTGGCGCAGCAGTACACCACGCAGAATTATGTGCGGAAGCGATACG
AATCCGAACTAGAAGCAATGATGGGTCATCAGAAGAATGAGTATCGAAAT
TGGATCACCAGTCAGGTCAGTCAGATGTTTCAAGTGTCGCCGGTGGCCAC
GCCGCTGGGTAACCGCTCCTCCATGTTCGTCTCGCAACAGCCCTCCATGG
AGGAGAGCTTCACCATTCACCTGGGCTCCCAGCTGAAGCACATGCACAAC
ATACGCATCCTGAGTGCCAATGTCACGGAGCTCTGCAGTCCGCTGCACGC
CGAGGAGAGTCTTAATGGCCTTAACATGGCTCTGGGATTGTACTCCAGTT
CCCTCTGCGGCGTCGTCGTGCTGACCCCATCGATTCAGGCCCAGGCCAAC
AAGAATATCATTAAAAATGCCAACAAGTCCACCGAGTTTCATTTTGAGCA
AATAGACGTTCAGATGGAAAAGATCGAGAAGCAGATTAAGAATTTGACCA
CTGAAGATTCCAGTGGCAGTAGTACTAGCAACAGCAGTGCCGAGGGCAGT
GGCACACCCTCGCCGACCAAGAAGAGCGTGCCCAGACTGAAAACAGGCGA
CTTCTTCATCACCAAGCACTCGAATCTCTCGCAAACGCATGTTATTTTTC
ACCTGATTTCGGACGAACCCATCAACAGTCCCAGTGAGATCAACTCGCGG
CATCCAGTGATCTTGGGTTTGCGAAACATCCTAAAGACAGCCAGCAGGCA
CGACATCACCACGCTGACCATTCCGGCTCTGCTGCGTCACGAGATGAGCG
AGGACATGACCGTCCAGTGGTGCATCAGAAGAGCAGAGCTGGTGTTTAAG
TGCGCCAAGGGGTTTATGATAGAATCTGCATCTTGGGGCGGAGCTGAGTT
AAGCACCTTGCAACTGCTACTGCCTGATGACATATCGGAAAGTTTGTTCA
CCACTCTGGCGGGAATGGTTCCCAGCGTTTTTCACGTGGCCAATCCCAAG
ATACTTGTGGACACCAGCAAGTAGAAGCTTTCTAGACCAT
BS09671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-RA | 1608 | CG9986-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-RA | 2179 | CG9986-RA | 90..1697 | 17..1624 | 8040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28606411..28607710 | 204..1503 | 6500 | 100 | Plus |
| 3R | 32079331 | 3R | 28606168..28606354 | 17..203 | 935 | 100 | Plus |
| 3R | 32079331 | 3R | 28607768..28607890 | 1502..1624 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:39:16 has no hits.
BS09671.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:43 Download gff for
BS09671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 1..1608 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:47 Download gff for
BS09671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 26..1641 | 8..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:17 Download gff for
BS09671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 90..1697 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:44 Download gff for
BS09671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 26..1641 | 8..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:11 Download gff for
BS09671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9986-RA | 90..1697 | 17..1624 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:11 Download gff for
BS09671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28606168..28606354 | 17..203 | 100 | -> | Plus |
| 3R | 28606411..28607710 | 204..1503 | 100 | -> | Plus |
| 3R | 28607770..28607890 | 1504..1624 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:17 Download gff for
BS09671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24431890..24432076 | 17..203 | 100 | -> | Plus |
| arm_3R | 24432133..24433432 | 204..1503 | 100 | -> | Plus |
| arm_3R | 24433492..24433612 | 1504..1624 | 100 | | Plus |
BS09671.pep Sequence
Translation from 16 to 1623
> BS09671.pep
MDSTATRTLPFVYKYKNHKGQDCESRLDITFPFDQENLEECITQLMAPNQ
MDPMMRYLDENIKLERELQKFVDTEQQNFLDDQAEKLLKQAANEEMDIEA
IVRDTERLYKEELLQFADRVGPSDADIFAQSFHRLVHSSSLEDILKRERA
YAKVVSDMTDLMDSEVETLNNSQQQEMDSQINQLDITTTSEDINNLLAQQ
YTTQNYVRKRYESELEAMMGHQKNEYRNWITSQVSQMFQVSPVATPLGNR
SSMFVSQQPSMEESFTIHLGSQLKHMHNIRILSANVTELCSPLHAEESLN
GLNMALGLYSSSLCGVVVLTPSIQAQANKNIIKNANKSTEFHFEQIDVQM
EKIEKQIKNLTTEDSSGSSTSNSSAEGSGTPSPTKKSVPRLKTGDFFITK
HSNLSQTHVIFHLISDEPINSPSEINSRHPVILGLRNILKTASRHDITTL
TIPALLRHEMSEDMTVQWCIRRAELVFKCAKGFMIESASWGGAELSTLQL
LLPDDISESLFTTLAGMVPSVFHVANPKILVDTSK*
BS09671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9986-PA | 535 | CG9986-PA | 1..535 | 1..535 | 2725 | 100 | Plus |
