Clone BS09676 Report

Search the DGRC for BS09676

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptlok-RB
Protein status:BS09676.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09676.3prime Sequence

914 bp (813 high quality bases) assembled on 2006-04-19

> BS09676.3prime
ATGGTCTAGAAAGCTTCTAGCGTCGCGATCGCTTGGTGGGTGGCTCAAGG
AAGTTCTCCTCCTCGATTTCCATGCCATCGAGCTTCATCAGCCTCTTCGC
CTTCTGCAGCATGGGCGCATCGCGCAGCCAGCTGCTCTGCAAAACGTCGT
CGATTGAGGGTCGCCTCTCGGGATCCACAATGAGCATTTGGTTGATCAGC
AGCTTGGCGCGCTGCGAGACACTCTTCCAAGAAGGGTGTCCATACGCGAA
TCTGCCCTTCTTTATTTGCTGGGCCGCCGGGGTGCCGTACTCGTCCGAAA
AGGGCAGAGTGCCACTCAGGCAAGTAAATAGCACCACTCCCAAGCTCCAA
ATGTCCACTTTCTTGGTGTAGGCTTCTCGGCCGCCGGTAATCAGCACCTC
AGGGGCCACGTAGAGAGGTGTGCCACAGAGCGTGCGCATAACCGAGTCCT
TCTGCACAAACTTACTCAGCCCGAAATCGGAGACCTTCAGTAGGGTCTCC
TCGTCATTGGTCTCCAGCAAAACATTGTCAGGCTTAAGGTCACGATGGGT
GATGCCCCGATCGTGTAGGTACTTGACGGCATGGCACATTTGGTAAAAGT
AAAGCTTCGAGATGTCCTCGCTAAGTAGTTTGTTGCTGATGATCCGGTTA
AGCAGGTCGCCGCCGCGCATAAACTCCAGCACCATATACACAGAATCCGG
CTTGTCCACGATGTCGTGCATGCGAACCACGCACGGATGTGAAAGATTCT
TCATAATCTTGGCTTCGTTCAGCACCCGGTCGGGATCACTGAAATTGGTA
CTGGGTCGCGCCCCAGAGAGCATATTCTTCTTAACGATTTTCATCGCAAA
CTGCTGGCAGGTGCGGGTGTCATAGACCAAACGCACCAGTCCGTACGCTC
CAGATCCCAGCTTG

BS09676.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10895-PA 1431 lok-RA 534..1431 914..17 4490 100 Minus
CG10895-PB 1380 lok-RB 483..1380 914..17 4490 100 Minus
CG10895-PC 1380 lok-RC 483..1380 914..17 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
lok-RC 2163 CG10895-RC 863..1760 914..17 4490 100 Minus
lok-RB 2105 CG10895-RB 802..1699 914..17 4490 100 Minus
lok-RA 2231 CG10895-RA 928..1825 914..17 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20062813..20063172 914..555 1800 100 Minus
2L 23513712 2L 20063671..20063975 321..17 1525 100 Minus
2L 23513712 2L 20063377..20063612 556..321 1180 100 Minus
Blast to na_te.dros performed on 2015-02-03 15:08:59 has no hits.

BS09676.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:53 Download gff for BS09676.3prime
Subject Subject Range Query Range Percent Splice Strand
lok-PB 483..1380 17..914 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:25 Download gff for BS09676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10895-PC 483..1380 17..914 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:17:11 Download gff for BS09676.3prime
Subject Subject Range Query Range Percent Splice Strand
lok-RA 928..1830 9..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:44:58 Download gff for BS09676.3prime
Subject Subject Range Query Range Percent Splice Strand
lok-RA 928..1830 9..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:44:58 Download gff for BS09676.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20062813..20063171 556..914 100 -> Minus
2L 20063378..20063612 321..555 100 -> Minus
2L 20063672..20063980 9..320 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:17:11 Download gff for BS09676.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20062813..20063171 556..914 100 -> Minus
arm_2L 20063378..20063612 321..555 100 -> Minus
arm_2L 20063672..20063980 9..320 99   Minus

BS09676.5prime Sequence

875 bp (836 high quality bases) assembled on 2006-04-19

> BS09676.5prime
GAAGTTATCAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCC
AGAGTCAGGCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAG
AAGATAGTCTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCT
GGATCTCAACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACT
TGATCCTCACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCC
AAAGTGCATTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGT
TTATATTCAGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAA
TTGGCACAAACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTG
TCCCACCCAACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGA
GTCGATCGGGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCA
AGCTGGGATCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGC
ACCTGCCAGCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGG
GGCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAG
CCAAGATTATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGAC
ATCGTGGACAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGG
CGGCGACCTGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACA
TCTCGAAGCTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACAC
GATCGGGGCATCACCCATCGTGACC

BS09676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10895-PB 1380 lok-RB 1..859 17..875 4295 100 Plus
CG10895-PC 1380 lok-RC 1..859 17..875 4295 100 Plus
CG10895-PA 1431 lok-RA 187..910 152..875 3620 100 Plus
CG10895-PA 1431 lok-RA 1..136 17..152 680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
lok-RC 2163 CG10895-RC 381..1239 17..875 4295 100 Plus
lok-RB 2105 CG10895-RB 320..1178 17..875 4295 100 Plus
lok-RD 2310 CG10895-RD 381..1222 17..858 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20062732..20063172 418..858 2205 100 Plus
2L 23513712 2L 20062147..20062306 152..311 800 100 Plus
2L 23513712 2L 20061877..20062012 17..152 680 100 Plus
2L 23513712 2L 20062542..20062653 308..419 560 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:25:14 has no hits.

BS09676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:54 Download gff for BS09676.5prime
Subject Subject Range Query Range Percent Splice Strand
lok-PB 1..859 17..875 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:27 Download gff for BS09676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10895-PC 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:40 Download gff for BS09676.5prime
Subject Subject Range Query Range Percent Splice Strand
lok-RB 315..1178 12..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:03 Download gff for BS09676.5prime
Subject Subject Range Query Range Percent Splice Strand
lok-RB 315..1178 12..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:03 Download gff for BS09676.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20062545..20062653 311..419 100 -> Plus
2L 20061872..20062012 12..152 98 -> Plus
2L 20062148..20062305 153..310 100 -> Plus
2L 20062734..20063171 420..857 100 -> Plus
2L 20063378..20063395 858..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:40 Download gff for BS09676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20061872..20062012 12..152 98 -> Plus
arm_2L 20062148..20062305 153..310 100 -> Plus
arm_2L 20062545..20062653 311..419 100 -> Plus
arm_2L 20062734..20063171 420..857 100 -> Plus
arm_2L 20063378..20063395 858..875 100   Plus

BS09676.complete Sequence

1412 bp (1412 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636463

> BS09676.complete
GAAGTTATCAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCC
AGAGTCAGGCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAG
AAGATAGTCTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCT
GGATCTCAACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACT
TGATCCTCACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCC
AAAGTGCATTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGT
TTATATTCAGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAA
TTGGCACAAACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTG
TCCCACCCAACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGA
GTCGATCGGGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCA
AGCTGGGATCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGC
ACCTGCCAGCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGG
GGCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAG
CCAAGATTATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGAC
ATCGTGGACAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGG
CGGCGACCTGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACA
TCTCGAAGCTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACAC
GATCGGGGCATCACCCATCGTGACCTTAAGCCTGACAATGTTTTGCTGGA
GACCAATGACGAGGAGACCCTACTGAAGGTCTCCGATTTCGGGCTGAGTA
AGTTTGTGCAGAAGGACTCGGTTATGCGCACGCTCTGTGGCACACCTCTC
TACGTGGCCCCTGAGGTGCTGATTACCGGCGGCCGAGAAGCCTACACCAA
GAAAGTGGACATTTGGAGCTTGGGAGTGGTGCTATTTACTTGCCTGAGTG
GCACTCTGCCCTTTTCGGACGAGTACGGCACCCCGGCGGCCCAGCAAATA
AAGAAGGGCAGATTCGCGTATGGACACCCTTCTTGGAAGAGTGTCTCGCA
GCGCGCCAAGCTGCTGATCAACCAAATGCTCATTGTGGATCCCGAGAGGC
GACCCTCAATCGACGACGTTTTGCAGAGCAGCTGGCTGCGCGATGCGCCC
ATGCTGCAGAAGGCGAAGAGGCTGATGAAGCTCGATGGCATGGAAATCGA
GGAGGAGAACTTCCTTGAGCCACCCACCAAGCGATCGCGACGCTAGAAGC
TTTCTAGACCAT

BS09676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
lok-RC 1380 CG10895-PC 1..1380 17..1396 6900 100 Plus
lok-RB 1380 CG10895-PB 1..1380 17..1396 6900 100 Plus
lok-RA 1431 CG10895-PA 187..1431 152..1396 6225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
lok-RC 2163 CG10895-RC 381..1760 17..1396 6900 100 Plus
lok-RB 2105 CG10895-RB 320..1699 17..1396 6900 100 Plus
lok-RA 2231 CG10895-RA 581..1825 152..1396 6225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20062732..20063172 418..858 2205 100 Plus
2L 23513712 2L 20063671..20063975 1092..1396 1525 100 Plus
2L 23513712 2L 20063377..20063612 857..1092 1180 100 Plus
2L 23513712 2L 20062147..20062306 152..311 800 100 Plus
2L 23513712 2L 20061877..20062012 17..152 680 100 Plus
2L 23513712 2L 20062542..20062653 308..419 560 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:04:47 has no hits.

BS09676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:33 Download gff for BS09676.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RC 1..1380 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:32 Download gff for BS09676.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RC 396..1785 12..1404 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:29 Download gff for BS09676.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RB 320..1699 17..1396 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:33 Download gff for BS09676.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RC 396..1785 12..1404 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:17 Download gff for BS09676.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RB 320..1699 17..1396 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:17 Download gff for BS09676.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20061877..20062012 17..152 100 -> Plus
2L 20062148..20062305 153..310 100 -> Plus
2L 20062545..20062653 311..419 100 -> Plus
2L 20062734..20063171 420..857 100 -> Plus
2L 20063378..20063612 858..1092 100 -> Plus
2L 20063672..20063975 1093..1396 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:29 Download gff for BS09676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20061877..20062012 17..152 100 -> Plus
arm_2L 20062148..20062305 153..310 100 -> Plus
arm_2L 20062545..20062653 311..419 100 -> Plus
arm_2L 20062734..20063171 420..857 100 -> Plus
arm_2L 20063378..20063612 858..1092 100 -> Plus
arm_2L 20063672..20063975 1093..1396 100   Plus

BS09676.pep Sequence

Translation from 16 to 1395

> BS09676.pep
MARDTQGTQGTQSQASNIWTQVESQPMEKIVWGRLYGKNIKIKSLDLNND
EFTAGRGEANDLILTLNDLPEKILTRISKVHFIIKRANCELTNPVYIQDL
SRNGTFVNNEKIGTNRMRILKNDDVISLSHPTYKAFVFKDLSPNESIGLP
EEINKTYYVNRKLGSGAYGLVRLVYDTRTCQQFAMKIVKKNMLSGARPST
NFSDPDRVLNEAKIMKNLSHPCVVRMHDIVDKPDSVYMVLEFMRGGDLLN
RIISNKLLSEDISKLYFYQMCHAVKYLHDRGITHRDLKPDNVLLETNDEE
TLLKVSDFGLSKFVQKDSVMRTLCGTPLYVAPEVLITGGREAYTKKVDIW
SLGVVLFTCLSGTLPFSDEYGTPAAQQIKKGRFAYGHPSWKSVSQRAKLL
INQMLIVDPERRPSIDDVLQSSWLRDAPMLQKAKRLMKLDGMEIEEENFL
EPPTKRSRR*

BS09676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
lok-PC 459 CG10895-PC 1..459 1..459 2383 100 Plus
lok-PB 459 CG10895-PB 1..459 1..459 2383 100 Plus
lok-PA 476 CG10895-PA 1..476 1..459 2355 96.4 Plus
lok-PD 284 CG10895-PD 1..284 1..284 1465 99.3 Plus
CaMKI-PI 390 CG1495-PI 27..287 153..424 461 35.9 Plus