Clone Sequence Records
BS09676.3prime Sequence
914 bp (813 high quality bases) assembled on 2006-04-19
> BS09676.3prime
ATGGTCTAGAAAGCTTCTAGCGTCGCGATCGCTTGGTGGGTGGCTCAAGG
AAGTTCTCCTCCTCGATTTCCATGCCATCGAGCTTCATCAGCCTCTTCGC
CTTCTGCAGCATGGGCGCATCGCGCAGCCAGCTGCTCTGCAAAACGTCGT
CGATTGAGGGTCGCCTCTCGGGATCCACAATGAGCATTTGGTTGATCAGC
AGCTTGGCGCGCTGCGAGACACTCTTCCAAGAAGGGTGTCCATACGCGAA
TCTGCCCTTCTTTATTTGCTGGGCCGCCGGGGTGCCGTACTCGTCCGAAA
AGGGCAGAGTGCCACTCAGGCAAGTAAATAGCACCACTCCCAAGCTCCAA
ATGTCCACTTTCTTGGTGTAGGCTTCTCGGCCGCCGGTAATCAGCACCTC
AGGGGCCACGTAGAGAGGTGTGCCACAGAGCGTGCGCATAACCGAGTCCT
TCTGCACAAACTTACTCAGCCCGAAATCGGAGACCTTCAGTAGGGTCTCC
TCGTCATTGGTCTCCAGCAAAACATTGTCAGGCTTAAGGTCACGATGGGT
GATGCCCCGATCGTGTAGGTACTTGACGGCATGGCACATTTGGTAAAAGT
AAAGCTTCGAGATGTCCTCGCTAAGTAGTTTGTTGCTGATGATCCGGTTA
AGCAGGTCGCCGCCGCGCATAAACTCCAGCACCATATACACAGAATCCGG
CTTGTCCACGATGTCGTGCATGCGAACCACGCACGGATGTGAAAGATTCT
TCATAATCTTGGCTTCGTTCAGCACCCGGTCGGGATCACTGAAATTGGTA
CTGGGTCGCGCCCCAGAGAGCATATTCTTCTTAACGATTTTCATCGCAAA
CTGCTGGCAGGTGCGGGTGTCATAGACCAAACGCACCAGTCCGTACGCTC
CAGATCCCAGCTTG
BS09676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10895-PA | 1431 | lok-RA | 534..1431 | 914..17 | 4490 | 100 | Minus |
CG10895-PB | 1380 | lok-RB | 483..1380 | 914..17 | 4490 | 100 | Minus |
CG10895-PC | 1380 | lok-RC | 483..1380 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-RC | 2163 | CG10895-RC | 863..1760 | 914..17 | 4490 | 100 | Minus |
lok-RB | 2105 | CG10895-RB | 802..1699 | 914..17 | 4490 | 100 | Minus |
lok-RA | 2231 | CG10895-RA | 928..1825 | 914..17 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20062813..20063172 | 914..555 | 1800 | 100 | Minus |
2L | 23513712 | 2L | 20063671..20063975 | 321..17 | 1525 | 100 | Minus |
2L | 23513712 | 2L | 20063377..20063612 | 556..321 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 15:08:59 has no hits.
BS09676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:53 Download gff for
BS09676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-PB | 483..1380 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:25 Download gff for
BS09676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10895-PC | 483..1380 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:17:11 Download gff for
BS09676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RA | 928..1830 | 9..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:44:58 Download gff for
BS09676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RA | 928..1830 | 9..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:44:58 Download gff for
BS09676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20062813..20063171 | 556..914 | 100 | -> | Minus |
2L | 20063378..20063612 | 321..555 | 100 | -> | Minus |
2L | 20063672..20063980 | 9..320 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:17:11 Download gff for
BS09676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20062813..20063171 | 556..914 | 100 | -> | Minus |
arm_2L | 20063378..20063612 | 321..555 | 100 | -> | Minus |
arm_2L | 20063672..20063980 | 9..320 | 99 | | Minus |
BS09676.5prime Sequence
875 bp (836 high quality bases) assembled on 2006-04-19
> BS09676.5prime
GAAGTTATCAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCC
AGAGTCAGGCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAG
AAGATAGTCTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCT
GGATCTCAACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACT
TGATCCTCACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCC
AAAGTGCATTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGT
TTATATTCAGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAA
TTGGCACAAACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTG
TCCCACCCAACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGA
GTCGATCGGGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCA
AGCTGGGATCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGC
ACCTGCCAGCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGG
GGCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAG
CCAAGATTATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGAC
ATCGTGGACAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGG
CGGCGACCTGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACA
TCTCGAAGCTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACAC
GATCGGGGCATCACCCATCGTGACC
BS09676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10895-PB | 1380 | lok-RB | 1..859 | 17..875 | 4295 | 100 | Plus |
CG10895-PC | 1380 | lok-RC | 1..859 | 17..875 | 4295 | 100 | Plus |
CG10895-PA | 1431 | lok-RA | 187..910 | 152..875 | 3620 | 100 | Plus |
CG10895-PA | 1431 | lok-RA | 1..136 | 17..152 | 680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-RC | 2163 | CG10895-RC | 381..1239 | 17..875 | 4295 | 100 | Plus |
lok-RB | 2105 | CG10895-RB | 320..1178 | 17..875 | 4295 | 100 | Plus |
lok-RD | 2310 | CG10895-RD | 381..1222 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20062732..20063172 | 418..858 | 2205 | 100 | Plus |
2L | 23513712 | 2L | 20062147..20062306 | 152..311 | 800 | 100 | Plus |
2L | 23513712 | 2L | 20061877..20062012 | 17..152 | 680 | 100 | Plus |
2L | 23513712 | 2L | 20062542..20062653 | 308..419 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:25:14 has no hits.
BS09676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:54 Download gff for
BS09676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-PB | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:27 Download gff for
BS09676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10895-PC | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:47:40 Download gff for
BS09676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RB | 315..1178 | 12..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:03 Download gff for
BS09676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RB | 315..1178 | 12..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:03 Download gff for
BS09676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
2L | 20061872..20062012 | 12..152 | 98 | -> | Plus |
2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
2L | 20062734..20063171 | 420..857 | 100 | -> | Plus |
2L | 20063378..20063395 | 858..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:47:40 Download gff for
BS09676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20061872..20062012 | 12..152 | 98 | -> | Plus |
arm_2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
arm_2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
arm_2L | 20062734..20063171 | 420..857 | 100 | -> | Plus |
arm_2L | 20063378..20063395 | 858..875 | 100 | | Plus |
BS09676.complete Sequence
1412 bp (1412 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636463
> BS09676.complete
GAAGTTATCAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCC
AGAGTCAGGCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAG
AAGATAGTCTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCT
GGATCTCAACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACT
TGATCCTCACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCC
AAAGTGCATTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGT
TTATATTCAGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAA
TTGGCACAAACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTG
TCCCACCCAACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGA
GTCGATCGGGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCA
AGCTGGGATCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGC
ACCTGCCAGCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGG
GGCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAG
CCAAGATTATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGAC
ATCGTGGACAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGG
CGGCGACCTGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACA
TCTCGAAGCTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACAC
GATCGGGGCATCACCCATCGTGACCTTAAGCCTGACAATGTTTTGCTGGA
GACCAATGACGAGGAGACCCTACTGAAGGTCTCCGATTTCGGGCTGAGTA
AGTTTGTGCAGAAGGACTCGGTTATGCGCACGCTCTGTGGCACACCTCTC
TACGTGGCCCCTGAGGTGCTGATTACCGGCGGCCGAGAAGCCTACACCAA
GAAAGTGGACATTTGGAGCTTGGGAGTGGTGCTATTTACTTGCCTGAGTG
GCACTCTGCCCTTTTCGGACGAGTACGGCACCCCGGCGGCCCAGCAAATA
AAGAAGGGCAGATTCGCGTATGGACACCCTTCTTGGAAGAGTGTCTCGCA
GCGCGCCAAGCTGCTGATCAACCAAATGCTCATTGTGGATCCCGAGAGGC
GACCCTCAATCGACGACGTTTTGCAGAGCAGCTGGCTGCGCGATGCGCCC
ATGCTGCAGAAGGCGAAGAGGCTGATGAAGCTCGATGGCATGGAAATCGA
GGAGGAGAACTTCCTTGAGCCACCCACCAAGCGATCGCGACGCTAGAAGC
TTTCTAGACCAT
BS09676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-RC | 1380 | CG10895-PC | 1..1380 | 17..1396 | 6900 | 100 | Plus |
lok-RB | 1380 | CG10895-PB | 1..1380 | 17..1396 | 6900 | 100 | Plus |
lok-RA | 1431 | CG10895-PA | 187..1431 | 152..1396 | 6225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-RC | 2163 | CG10895-RC | 381..1760 | 17..1396 | 6900 | 100 | Plus |
lok-RB | 2105 | CG10895-RB | 320..1699 | 17..1396 | 6900 | 100 | Plus |
lok-RA | 2231 | CG10895-RA | 581..1825 | 152..1396 | 6225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20062732..20063172 | 418..858 | 2205 | 100 | Plus |
2L | 23513712 | 2L | 20063671..20063975 | 1092..1396 | 1525 | 100 | Plus |
2L | 23513712 | 2L | 20063377..20063612 | 857..1092 | 1180 | 100 | Plus |
2L | 23513712 | 2L | 20062147..20062306 | 152..311 | 800 | 100 | Plus |
2L | 23513712 | 2L | 20061877..20062012 | 17..152 | 680 | 100 | Plus |
2L | 23513712 | 2L | 20062542..20062653 | 308..419 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:04:47 has no hits.
BS09676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:33 Download gff for
BS09676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RC | 1..1380 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:32 Download gff for
BS09676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RC | 396..1785 | 12..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:29 Download gff for
BS09676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RB | 320..1699 | 17..1396 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:33 Download gff for
BS09676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RC | 396..1785 | 12..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:17 Download gff for
BS09676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RB | 320..1699 | 17..1396 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:17 Download gff for
BS09676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20061877..20062012 | 17..152 | 100 | -> | Plus |
2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
2L | 20062734..20063171 | 420..857 | 100 | -> | Plus |
2L | 20063378..20063612 | 858..1092 | 100 | -> | Plus |
2L | 20063672..20063975 | 1093..1396 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:29 Download gff for
BS09676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20061877..20062012 | 17..152 | 100 | -> | Plus |
arm_2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
arm_2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
arm_2L | 20062734..20063171 | 420..857 | 100 | -> | Plus |
arm_2L | 20063378..20063612 | 858..1092 | 100 | -> | Plus |
arm_2L | 20063672..20063975 | 1093..1396 | 100 | | Plus |
BS09676.pep Sequence
Translation from 16 to 1395
> BS09676.pep
MARDTQGTQGTQSQASNIWTQVESQPMEKIVWGRLYGKNIKIKSLDLNND
EFTAGRGEANDLILTLNDLPEKILTRISKVHFIIKRANCELTNPVYIQDL
SRNGTFVNNEKIGTNRMRILKNDDVISLSHPTYKAFVFKDLSPNESIGLP
EEINKTYYVNRKLGSGAYGLVRLVYDTRTCQQFAMKIVKKNMLSGARPST
NFSDPDRVLNEAKIMKNLSHPCVVRMHDIVDKPDSVYMVLEFMRGGDLLN
RIISNKLLSEDISKLYFYQMCHAVKYLHDRGITHRDLKPDNVLLETNDEE
TLLKVSDFGLSKFVQKDSVMRTLCGTPLYVAPEVLITGGREAYTKKVDIW
SLGVVLFTCLSGTLPFSDEYGTPAAQQIKKGRFAYGHPSWKSVSQRAKLL
INQMLIVDPERRPSIDDVLQSSWLRDAPMLQKAKRLMKLDGMEIEEENFL
EPPTKRSRR*
BS09676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-PC | 459 | CG10895-PC | 1..459 | 1..459 | 2383 | 100 | Plus |
lok-PB | 459 | CG10895-PB | 1..459 | 1..459 | 2383 | 100 | Plus |
lok-PA | 476 | CG10895-PA | 1..476 | 1..459 | 2355 | 96.4 | Plus |
lok-PD | 284 | CG10895-PD | 1..284 | 1..284 | 1465 | 99.3 | Plus |
CaMKI-PI | 390 | CG1495-PI | 27..287 | 153..424 | 461 | 35.9 | Plus |