Clone Sequence Records
BS09678.3prime Sequence
936 bp (803 high quality bases) assembled on 2006-04-19
> BS09678.3prime
ATGGTCTAGAAAGCTTTTACAGCTCGTCCTTATCCAGATCGATGTCGCTC
AGATCGATGTCCTCCTCGGTGGGCAGTTGGCCATCTTTGCCGTCCCAAGG
ATCCACGGACACAATCGCCGGCTTTTTGGCTCCGCGAACAGGCGCCGTGT
GGCCACGTCCGTAGGAGATGTCGCGCAGGAACTCGTTGATGCCGTCCTTG
GAGAAGGAGCCCTTGAGCACGGAGAATTTCATCTTCTTGAAGTTGACCAC
AGCCATGGCCGGATAGCCGAATCCGCCCACTTCGAGCGACTCTTCCAGGG
CCAACTGCTGGCCACCTTCTGCCCAGGCCCAGCCCCATTGCTTCTGCTTG
AACTTCTCGCCCAGGGTGCGCAATGTGTCGAGGAACTTGTTGCGGCACTT
GGCATCGCAGTCGAGAATGTGTGGCAGAACGGACACGACGCACAATGGCT
TTCCTTCGCAGGCAGTTTCAAAAGTCGATTCATTGATAATCTCGATGAGT
TCGGGTGCTGGCACATTGGCCACATGCTTGTCACTGGCCCAGGATACAAT
ATCCGAGGCAGTGCGTCCGCCATCATACTCCTGGGCATCACTGGCTCGCT
TGGAGCCCGCAGGGAAGAACTTAATGGTAGGATACCCACGCACATTGTAT
TCGGCGGCCTTGCTCTGATGCGCGGTGGCATCCAGGGCGCCCAACTTAAC
CTTGCCCTTCAATTCTTTGGCGGCCTTGGCCCATTCGGGTGCCAGGTTCT
TGCAGTGACCACACCAGGGGGCGAAGAATTCCACCAGCCATATGTCGTCG
GAGTTCAGGACCAGTTTGTCAAAGTTGTCCTCGGTGAGTTCGATGACATC
ATCGCCGGACGAGCTGCCGGAACCGCCGGAAGACGATCCACCCGCCGCGC
CCAGGACACCTTGCACCTTCTTCTTTGACTCCGCCA
BS09678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5809-PA | 1302 | CaBP1-RA | 427..1302 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1781 | CG5809-RB | 566..1485 | 936..17 | 4495 | 99.5 | Minus |
| CaBP1-RA | 1723 | CG5809-RA | 566..1485 | 936..17 | 4495 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16355182..16356101 | 17..936 | 4480 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:21:10 has no hits.
BS09678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:58 Download gff for
BS09678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-PA | 384..1302 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:31 Download gff for
BS09678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5809-PA | 384..1302 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:07:50 Download gff for
BS09678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 567..1494 | 6..935 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:11 Download gff for
BS09678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 567..1494 | 6..935 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:11 Download gff for
BS09678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16355173..16356100 | 6..935 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:07:50 Download gff for
BS09678.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16355173..16356100 | 6..935 | 98 | | Plus |
BS09678.5prime Sequence
936 bp (846 high quality bases) assembled on 2006-04-19
> BS09678.5prime
GAAGTTATCAGTCGACATGAGGCAACTGGCGAGCATTTTGTTGCTGGCAT
TTGTCGTGGGCAGCGTTAGTGCCTTCTATTCGCCCAGCGATGGCGTTGTG
GAGCTGACGCCCTCGAATTTCGACCGGGAGGTGCTGAAAGACGACGCCAT
CTGGGTCGTGGAGTTCTATGCTCCATGGTGCGGCCATTGTCAGAGCCTGG
TGCCCGAGTACAAGAAGCTGGCCAAGGCATTGAAGGGAGTCGTGAAAGTG
GGCTCCGTGAATGCCGATGCGGACAGCACGCTGAGTGGCCAGTTCGGTGT
ACGTGGCTTTCCCACCATCAAGATCTTTGGCGCCAACAAGAAGTCGCCCA
CGGACTACAATGGTCAGCGAACCGCTAAGGCCATCGCTGAAGCCGCTCTG
GCGGAGGTCAAGAAGAAGGTGCAGGGTGTCCTGGGCGGCGGCGGTGGATC
GTCTTCCGGCGGTTCCGGCAGCTCGTCCGGCGATGATGTCATCGAACTCA
CCGAGGACAACTTTGACAAACTGGTCCTGAACTCCGACGACATATGGCTG
GTGGAATTCTTCGCCCCCTGGTGTGGTCACTGCAAGAACCTGGCACCCGA
ATGGGCCAAGGCCGCCAAAGAATTGAAGGGCAAGGTTAAGTTGGGCGCCC
TGGATGCCACCGCGCATCAGAGCAAGGCCGCCGAATACAATGTGCGTGGG
TATCCTACCATTAAGTTCTTCCCTGCGGGCTCCAAGCGAGCCAGTGATGC
CCAGGAGTATGATGGCGGACGCACTGCCTCGGATATTGTATCCTGNGCCA
GTGACAAGCATGTGGCCAATGTGCCAGCACCCGAACTCATCGAGATTATC
AATGAATCGACTTTTGAAACTGCCTGCGAAGGAAAGCCATTGTGCGTCGT
GTCCGTTCTGCCACACATTCTCGACTGCGATGCCAA
BS09678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5809-PA | 1302 | CaBP1-RA | 1..920 | 17..936 | 4581 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1781 | CG5809-RB | 184..1103 | 17..936 | 4589 | 99.9 | Plus |
| CaBP1-RA | 1723 | CG5809-RA | 184..1103 | 17..936 | 4589 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16355564..16356471 | 936..29 | 4529 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:12:46 has no hits.
BS09678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:16:59 Download gff for
BS09678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:33 Download gff for
BS09678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5809-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:56:37 Download gff for
BS09678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..1101 | 10..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:36 Download gff for
BS09678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..1101 | 10..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:36 Download gff for
BS09678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16355566..16356470 | 30..934 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:56:37 Download gff for
BS09678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16355566..16356470 | 30..934 | 99 | <- | Minus |
BS09678.complete Sequence
1334 bp (1334 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636464
> BS09678.complete
GAAGTTATCAGTCGACATGAGGCAACTGGCGAGCATTTTGTTGCTGGCAT
TTGTCGTGGGCAGCGTTAGTGCCTTCTATTCGCCCAGCGATGGCGTTGTG
GAGCTGACGCCCTCGAATTTCGACCGGGAGGTGCTGAAAGACGACGCCAT
CTGGGTCGTGGAGTTCTATGCTCCATGGTGCGGCCATTGTCAGAGCCTGG
TGCCCGAGTACAAGAAGCTGGCCAAGGCATTGAAGGGAGTCGTGAAAGTG
GGCTCCGTGAATGCCGATGCGGACAGCACGCTGAGTGGCCAGTTCGGTGT
ACGTGGCTTTCCCACCATCAAGATCTTTGGCGCCAACAAGAAGTCGCCCA
CGGACTACAATGGTCAGCGAACCGCTAAGGCCATCGCTGAAGCCGCTCTG
GCGGAGGTCAAGAAGAAGGTGCAGGGTGTCCTGGGCGGCGGCGGTGGATC
GTCTTCCGGCGGTTCCGGCAGCTCGTCCGGCGATGATGTCATCGAACTCA
CCGAGGACAACTTTGACAAACTGGTCCTGAACTCCGACGACATATGGCTG
GTGGAATTCTTCGCCCCCTGGTGTGGTCACTGCAAGAACCTGGCACCCGA
ATGGGCCAAGGCCGCCAAAGAATTGAAGGGCAAGGTTAAGTTGGGCGCCC
TGGATGCCACCGCGCATCAGAGCAAGGCCGCCGAATACAATGTGCGTGGG
TATCCTACCATTAAGTTCTTCCCTGCGGGCTCCAAGCGAGCCAGTGATGC
CCAGGAGTATGATGGCGGACGCACTGCCTCGGATATTGTATCCTGGGCCA
GTGACAAGCATGTGGCCAATGTGCCAGCACCCGAACTCATCGAGATTATC
AATGAATCGACTTTTGAAACTGCCTGCGAAGGAAAGCCATTGTGCGTCGT
GTCCGTTCTGCCACACATTCTCGACTGCGATGCCAAGTGCCGCAACAAGT
TCCTCGACACATTGCGCACCCTGGGCGAGAAGTTCAAGCAGAAGCAATGG
GGCTGGGCCTGGGCAGAAGGTGGCCAGCAGTTGGCCCTGGAAGAGTCGCT
CGAAGTGGGCGGATTCGGCTATCCGGCCATGGCTGTGGTCAACTTCAAGA
AGATGAAATTCTCCGTGCTCAAGGGCTCCTTCTCCAAGGACGGCATCAAC
GAGTTCCTGCGCGACATCTCCTACGGACGTGGCCACACGGCGCCTGTTCG
CGGAGCCAAAAAGCCGGCGATTGTGTCCGTGGATCCTTGGGACGGCAAAG
ATGGCCAACTGCCCACCGAGGAGGACATCGATCTGAGCGACATCGATCTG
GATAAGGACGAGCTGTAAAAGCTTTCTAGACCAT
BS09678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1302 | CG5809-PB | 1..1302 | 17..1318 | 6510 | 100 | Plus |
| CaBP1-RA | 1302 | CG5809-PA | 1..1302 | 17..1318 | 6510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1781 | CG5809-RB | 184..1485 | 17..1318 | 6510 | 100 | Plus |
| CaBP1-RA | 1723 | CG5809-RA | 184..1485 | 17..1318 | 6510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16355182..16356471 | 1318..29 | 6450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:52:07 has no hits.
BS09678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:34 Download gff for
BS09678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 1..1302 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:34 Download gff for
BS09678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 204..1520 | 10..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:13 Download gff for
BS09678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 184..1483 | 17..1316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:34 Download gff for
BS09678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 204..1520 | 10..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:49 Download gff for
BS09678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 184..1483 | 17..1316 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:49 Download gff for
BS09678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16355184..16356470 | 30..1316 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:13 Download gff for
BS09678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16355184..16356470 | 30..1316 | 100 | <- | Minus |
BS09678.pep Sequence
Translation from 16 to 1317
> BS09678.pep
MRQLASILLLAFVVGSVSAFYSPSDGVVELTPSNFDREVLKDDAIWVVEF
YAPWCGHCQSLVPEYKKLAKALKGVVKVGSVNADADSTLSGQFGVRGFPT
IKIFGANKKSPTDYNGQRTAKAIAEAALAEVKKKVQGVLGGGGGSSSGGS
GSSSGDDVIELTEDNFDKLVLNSDDIWLVEFFAPWCGHCKNLAPEWAKAA
KELKGKVKLGALDATAHQSKAAEYNVRGYPTIKFFPAGSKRASDAQEYDG
GRTASDIVSWASDKHVANVPAPELIEIINESTFETACEGKPLCVVSVLPH
ILDCDAKCRNKFLDTLRTLGEKFKQKQWGWAWAEGGQQLALEESLEVGGF
GYPAMAVVNFKKMKFSVLKGSFSKDGINEFLRDISYGRGHTAPVRGAKKP
AIVSVDPWDGKDGQLPTEEDIDLSDIDLDKDEL*
BS09678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-PB | 433 | CG5809-PB | 1..433 | 1..433 | 2272 | 100 | Plus |
| CaBP1-PA | 433 | CG5809-PA | 1..433 | 1..433 | 2272 | 100 | Plus |
| prtp-PC | 416 | CG1837-PC | 40..266 | 28..260 | 304 | 31.7 | Plus |
| prtp-PB | 416 | CG1837-PB | 40..266 | 28..260 | 304 | 31.7 | Plus |
| prtp-PA | 416 | CG1837-PA | 40..266 | 28..260 | 304 | 31.7 | Plus |
| prtp-PC | 416 | CG1837-PC | 168..406 | 27..260 | 274 | 29.8 | Plus |
| prtp-PB | 416 | CG1837-PB | 168..406 | 27..260 | 274 | 29.8 | Plus |
