Clone Sequence Records
BS09679.3prime Sequence
861 bp (804 high quality bases) assembled on 2006-04-19
> BS09679.3prime
ATGGTCTAGAAAGCTTTTACTTTGTTTCCTCCTTCTCTTTGTTCTCCTCG
GTCGACTCCTTCTCGTTTGACTTGTCCTTCTCCAACTCCTTCTCGATCTT
GTCGCCCTCAGTGCCCTCCTGTTCGTTTGATTTCTCCTGCTCGCCACCCT
CCTTGCCCTCCTTGGTCTCGGGCTCTGGCTTGGGAATGTGCGCATTGAGG
TCCAGCTTCGTGCAGATCTCGTCCCAGTCGGGGAAGCACTTGTCCTTCAT
GCGAGATACGTGGCCAATCAAGTTGGGGCACTTCTCGGTCATGTAGTCGC
GCAGCGGATACGCAATGTCCTTGGACAGATAGTGGAGCTGCGAGAGGACA
GCGAAGGCCACCACATCCAGGGTGGTGGGCTCGTCGCCGAAGAAGAAAGG
CTTGCAGTCGAGCATCTCGCTGAGCACCTTCAGGTCGTCCTTGCCGAACT
CCTCGATCTCCTCGGCGCTGTGGACACCGATGCCGTGCGCCTTCAGCTTC
TTCGTGCCCTGGAACCACTTGCGACCAAAGGTGATCTTAAAGAAGAAGTT
CAGAATCGAGTTGGGCAGCCGCAGGCCGAGGGCGTGCTGCAAGTTGACCT
TGTAGCCCTTGAGCACATTGTCCGGATACTTGGCGCGCCAGTAGAAGATG
ATCCAGATGAGATGGTTCTCCAGCATGGCAATCGTGGCGTACGAGACATT
CCTTTGCTCGGCGGTGAGTCCCGAGTCCAGGTACTTCTCGTATTTGGACG
ACAGTTCCTTGATGATGATGGCCGAATCGGCGATTTCCTCCCCATTCAGC
TCGATGAACGGCAGCTGACCCTTCTTGGAGCGGAAACGCATCTTATGATC
GACATTCTCGT
BS09679.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4609-PA | 1257 | fax-RA | 413..1257 | 861..17 | 4225 | 100 | Minus |
CG4609-PB | 849 | fax-RB | 10..849 | 856..17 | 4200 | 100 | Minus |
CG4609-PC | 1248 | fax-RC | 755..1248 | 510..17 | 2470 | 100 | Minus |
CG4609-PD | 840 | fax-RD | 347..840 | 510..17 | 2470 | 100 | Minus |
CG4609-PC | 1248 | fax-RC | 413..756 | 861..518 | 1720 | 100 | Minus |
CG4609-PD | 840 | fax-RD | 10..348 | 856..518 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-RA | 3988 | CG4609-RA | 823..1668 | 861..16 | 4230 | 100 | Minus |
fax-RF | 3218 | CG4609-RF | 58..898 | 856..16 | 4205 | 100 | Minus |
fax-RB | 3283 | CG4609-RB | 123..963 | 856..16 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16405501..16405849 | 173..521 | 1745 | 100 | Plus |
3L | 28110227 | 3L | 16407021..16407361 | 518..858 | 1705 | 100 | Plus |
3L | 28110227 | 3L | 16405326..16405428 | 71..173 | 515 | 100 | Plus |
3L | 28110227 | 3L | 16405116..16405172 | 16..72 | 285 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 694..632 | 114 | 66.7 | Minus |
BS09679.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:00 Download gff for
BS09679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4609-PA | 413..1257 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:34 Download gff for
BS09679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4609-PA | 413..1257 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:39:00 Download gff for
BS09679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 834..1679 | 16..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:27 Download gff for
BS09679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 823..1668 | 16..861 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:27 Download gff for
BS09679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16405116..16405170 | 16..70 | 100 | <- | Plus |
3L | 16405326..16405428 | 71..173 | 100 | <- | Plus |
3L | 16405502..16405845 | 174..517 | 100 | <- | Plus |
3L | 16407021..16407362 | 518..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:00 Download gff for
BS09679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16398216..16398270 | 16..70 | 100 | <- | Plus |
arm_3L | 16398426..16398528 | 71..173 | 100 | <- | Plus |
arm_3L | 16398602..16398945 | 174..517 | 100 | <- | Plus |
arm_3L | 16400121..16400462 | 518..861 | 99 | | Plus |
BS09679.5prime Sequence
899 bp (787 high quality bases) assembled on 2006-04-19
> BS09679.5prime
GAAGTTATCAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGG
AAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCA
GCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGT
GGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAA
AGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTG
GCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAA
TGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCT
CGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAG
ACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGAT
GCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGG
AGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATAC
GAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTA
CGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACT
GGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTG
CAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTT
TAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGG
CGCACGGCATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCGGCAAG
GACGACCTGAAAGTGCTCAGCGAGATGCTCGACTGCAAGCCTTTCTTCT
BS09679.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4609-PA | 1257 | fax-RA | 1..883 | 17..899 | 4390 | 99.8 | Plus |
CG4609-PC | 1248 | fax-RC | 1..756 | 17..772 | 3780 | 100 | Plus |
CG4609-PB | 849 | fax-RB | 10..475 | 434..899 | 2305 | 99.7 | Plus |
CG4609-PD | 840 | fax-RD | 10..348 | 434..772 | 1695 | 100 | Plus |
CG4609-PC | 1248 | fax-RC | 755..874 | 780..899 | 575 | 99.1 | Plus |
CG4609-PD | 840 | fax-RD | 347..466 | 780..899 | 575 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-RA | 3988 | CG4609-RA | 406..1293 | 12..899 | 4410 | 99.8 | Plus |
fax-RC | 3153 | CG4609-RC | 362..1240 | 12..899 | 4265 | 98.8 | Plus |
fax-RF | 3218 | CG4609-RF | 58..523 | 434..899 | 2315 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16411002..16411423 | 433..12 | 2095 | 99.8 | Minus |
3L | 28110227 | 3L | 16407021..16407361 | 772..432 | 1705 | 100 | Minus |
3L | 28110227 | 3L | 16405719..16405849 | 899..769 | 640 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-12 06:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 596..658 | 114 | 66.7 | Plus |
BS09679.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:01 Download gff for
BS09679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4609-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:36 Download gff for
BS09679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4609-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:35:18 Download gff for
BS09679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 417..1304 | 12..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:29 Download gff for
BS09679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 406..1293 | 12..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:29 Download gff for
BS09679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16405719..16405845 | 773..899 | 99 | <- | Minus |
3L | 16407021..16407359 | 434..772 | 100 | <- | Minus |
3L | 16411002..16411423 | 12..433 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:35:18 Download gff for
BS09679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16398819..16398945 | 773..899 | 99 | <- | Minus |
arm_3L | 16400121..16400459 | 434..772 | 100 | <- | Minus |
arm_3L | 16404102..16404523 | 12..433 | 99 | | Minus |
BS09679.complete Sequence
1289 bp (1289 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ638828
> BS09679.complete
GAAGTTATCAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGG
AAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCA
GCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGT
GGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAA
AGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTG
GCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAA
TGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCT
CGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAG
ACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGAT
GCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGG
AGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATAC
GAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTA
CGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACT
GGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTG
CAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTT
TAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGG
CGCACGGCATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCGGCAAG
GACGACCTGAAGGTGCTCAGCGAGATGCTCGACTGCAAGCCTTTCTTCTT
CGGCGACGAGCCCACCACCCTGGATGTGGTGGCCTTCGCTGTCCTCTCGC
AGCTCCACTATCTGTCCAAGGACATTGCGTATCCGCTGCGCGACTACATG
ACCGAGAAGTGCCCCAACTTGATTGGCCACGTATCTCGCATGAAGGACAA
GTGCTTCCCCGACTGGGACGAGATCTGCACGAAGCTGGACCTCAATGCGC
ACATTCCCAAGCCAGAGCCCGAGACCAAGGAGGGCAAGGAGGGTGGCGAG
CAGGAGAAATCAAACGAACAGGAGGGCACTGAGGGCGACAAGATCGAGAA
GGAGTTGGAGAAGGACAAGTCAAACGAGAAGGAGTCGACCGAGGAGAACA
AAGAGAAGGAGGAAACAAAGTAAAAGCTTTCTAGACCAT
BS09679.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-RA | 1257 | CG4609-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
fax-RC | 1248 | CG4609-PC | 1..1248 | 17..1273 | 6115 | 99.3 | Plus |
fax-RB | 849 | CG4609-PB | 10..849 | 434..1273 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-RA | 3988 | CG4609-RA | 406..1668 | 12..1274 | 6300 | 99.9 | Plus |
fax-RC | 3153 | CG4609-RC | 362..1615 | 12..1274 | 6130 | 99.2 | Plus |
fax-RF | 3218 | CG4609-RF | 58..898 | 434..1274 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16411002..16411423 | 433..12 | 2095 | 99.8 | Minus |
3L | 28110227 | 3L | 16405501..16405849 | 1117..769 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 16407021..16407361 | 772..432 | 1705 | 100 | Minus |
3L | 28110227 | 3L | 16405326..16405428 | 1219..1117 | 515 | 100 | Minus |
3L | 28110227 | 3L | 16405116..16405172 | 1274..1218 | 285 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 596..658 | 114 | 66.7 | Plus |
BS09679.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:35 Download gff for
BS09679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 1..1257 | 17..1273 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:35 Download gff for
BS09679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 417..1679 | 12..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:29 Download gff for
BS09679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 422..1676 | 17..1271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:35 Download gff for
BS09679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 417..1679 | 12..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:48 Download gff for
BS09679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 411..1665 | 17..1271 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:48 Download gff for
BS09679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16405119..16405170 | 1220..1271 | 100 | <- | Minus |
3L | 16405326..16405428 | 1117..1219 | 100 | <- | Minus |
3L | 16405502..16405845 | 773..1116 | 100 | <- | Minus |
3L | 16407021..16407359 | 434..772 | 100 | <- | Minus |
3L | 16411002..16411418 | 17..433 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:29 Download gff for
BS09679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16398219..16398270 | 1220..1271 | 100 | <- | Minus |
arm_3L | 16398426..16398528 | 1117..1219 | 100 | <- | Minus |
arm_3L | 16398602..16398945 | 773..1116 | 100 | <- | Minus |
arm_3L | 16400121..16400459 | 434..772 | 100 | <- | Minus |
arm_3L | 16404102..16404518 | 17..433 | 100 | | Minus |
BS09679.pep Sequence
Translation from 16 to 1272
> BS09679.pep
MASEVAQIPAEETPAVAAAEKSEEPEKSAAPPADSAAAPAAAPAVEKAED
ADGEKKDGEAGKQDKQQDGEEPKKDEAVAAPVATKSEAPPAQKFNVHKTN
FEKDIIYLYQFSRTPLLPSLSPYCLKVETWLRLVGLKYENVDHKMRFRSK
KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM
LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG
RKWFQGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPT
TLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDW
DEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKD
KSNEKESTEENKEKEETK*
BS09679.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-PA | 418 | CG4609-PA | 1..418 | 1..418 | 2187 | 100 | Plus |
fax-PC | 415 | CG4609-PC | 1..415 | 1..418 | 2151 | 99.3 | Plus |
fax-PB | 282 | CG4609-PB | 4..282 | 140..418 | 1478 | 100 | Plus |
fax-PF | 274 | CG4609-PF | 1..274 | 145..418 | 1449 | 100 | Plus |
fax-PD | 279 | CG4609-PD | 4..279 | 140..418 | 1442 | 98.9 | Plus |