Clone BS09679 Report

Search the DGRC for BS09679

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptfax-RA
Protein status:BS09679.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09679.3prime Sequence

861 bp (804 high quality bases) assembled on 2006-04-19

> BS09679.3prime
ATGGTCTAGAAAGCTTTTACTTTGTTTCCTCCTTCTCTTTGTTCTCCTCG
GTCGACTCCTTCTCGTTTGACTTGTCCTTCTCCAACTCCTTCTCGATCTT
GTCGCCCTCAGTGCCCTCCTGTTCGTTTGATTTCTCCTGCTCGCCACCCT
CCTTGCCCTCCTTGGTCTCGGGCTCTGGCTTGGGAATGTGCGCATTGAGG
TCCAGCTTCGTGCAGATCTCGTCCCAGTCGGGGAAGCACTTGTCCTTCAT
GCGAGATACGTGGCCAATCAAGTTGGGGCACTTCTCGGTCATGTAGTCGC
GCAGCGGATACGCAATGTCCTTGGACAGATAGTGGAGCTGCGAGAGGACA
GCGAAGGCCACCACATCCAGGGTGGTGGGCTCGTCGCCGAAGAAGAAAGG
CTTGCAGTCGAGCATCTCGCTGAGCACCTTCAGGTCGTCCTTGCCGAACT
CCTCGATCTCCTCGGCGCTGTGGACACCGATGCCGTGCGCCTTCAGCTTC
TTCGTGCCCTGGAACCACTTGCGACCAAAGGTGATCTTAAAGAAGAAGTT
CAGAATCGAGTTGGGCAGCCGCAGGCCGAGGGCGTGCTGCAAGTTGACCT
TGTAGCCCTTGAGCACATTGTCCGGATACTTGGCGCGCCAGTAGAAGATG
ATCCAGATGAGATGGTTCTCCAGCATGGCAATCGTGGCGTACGAGACATT
CCTTTGCTCGGCGGTGAGTCCCGAGTCCAGGTACTTCTCGTATTTGGACG
ACAGTTCCTTGATGATGATGGCCGAATCGGCGATTTCCTCCCCATTCAGC
TCGATGAACGGCAGCTGACCCTTCTTGGAGCGGAAACGCATCTTATGATC
GACATTCTCGT

BS09679.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4609-PA 1257 fax-RA 413..1257 861..17 4225 100 Minus
CG4609-PB 849 fax-RB 10..849 856..17 4200 100 Minus
CG4609-PC 1248 fax-RC 755..1248 510..17 2470 100 Minus
CG4609-PD 840 fax-RD 347..840 510..17 2470 100 Minus
CG4609-PC 1248 fax-RC 413..756 861..518 1720 100 Minus
CG4609-PD 840 fax-RD 10..348 856..518 1695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
fax-RA 3988 CG4609-RA 823..1668 861..16 4230 100 Minus
fax-RF 3218 CG4609-RF 58..898 856..16 4205 100 Minus
fax-RB 3283 CG4609-RB 123..963 856..16 4205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16405501..16405849 173..521 1745 100 Plus
3L 28110227 3L 16407021..16407361 518..858 1705 100 Plus
3L 28110227 3L 16405326..16405428 71..173 515 100 Plus
3L 28110227 3L 16405116..16405172 16..72 285 100 Plus
Blast to na_te.dros performed 2015-02-10 20:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4503..4564 694..632 114 66.7 Minus

BS09679.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:00 Download gff for BS09679.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4609-PA 413..1257 17..861 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:34 Download gff for BS09679.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4609-PA 413..1257 17..861 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:39:00 Download gff for BS09679.3prime
Subject Subject Range Query Range Percent Splice Strand
fax-RA 834..1679 16..861 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:27 Download gff for BS09679.3prime
Subject Subject Range Query Range Percent Splice Strand
fax-RA 823..1668 16..861 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:27 Download gff for BS09679.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16405116..16405170 16..70 100 <- Plus
3L 16405326..16405428 71..173 100 <- Plus
3L 16405502..16405845 174..517 100 <- Plus
3L 16407021..16407362 518..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:00 Download gff for BS09679.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16398216..16398270 16..70 100 <- Plus
arm_3L 16398426..16398528 71..173 100 <- Plus
arm_3L 16398602..16398945 174..517 100 <- Plus
arm_3L 16400121..16400462 518..861 99   Plus

BS09679.5prime Sequence

899 bp (787 high quality bases) assembled on 2006-04-19

> BS09679.5prime
GAAGTTATCAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGG
AAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCA
GCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGT
GGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAA
AGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTG
GCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAA
TGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCT
CGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAG
ACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGAT
GCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGG
AGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATAC
GAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTA
CGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACT
GGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTG
CAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTT
TAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGG
CGCACGGCATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCGGCAAG
GACGACCTGAAAGTGCTCAGCGAGATGCTCGACTGCAAGCCTTTCTTCT

BS09679.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4609-PA 1257 fax-RA 1..883 17..899 4390 99.8 Plus
CG4609-PC 1248 fax-RC 1..756 17..772 3780 100 Plus
CG4609-PB 849 fax-RB 10..475 434..899 2305 99.7 Plus
CG4609-PD 840 fax-RD 10..348 434..772 1695 100 Plus
CG4609-PC 1248 fax-RC 755..874 780..899 575 99.1 Plus
CG4609-PD 840 fax-RD 347..466 780..899 575 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
fax-RA 3988 CG4609-RA 406..1293 12..899 4410 99.8 Plus
fax-RC 3153 CG4609-RC 362..1240 12..899 4265 98.8 Plus
fax-RF 3218 CG4609-RF 58..523 434..899 2315 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16411002..16411423 433..12 2095 99.8 Minus
3L 28110227 3L 16407021..16407361 772..432 1705 100 Minus
3L 28110227 3L 16405719..16405849 899..769 640 99.2 Minus
Blast to na_te.dros performed 2015-02-12 06:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4503..4564 596..658 114 66.7 Plus

BS09679.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:01 Download gff for BS09679.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4609-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:36 Download gff for BS09679.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4609-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:35:18 Download gff for BS09679.5prime
Subject Subject Range Query Range Percent Splice Strand
fax-RA 417..1304 12..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:29 Download gff for BS09679.5prime
Subject Subject Range Query Range Percent Splice Strand
fax-RA 406..1293 12..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:29 Download gff for BS09679.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16405719..16405845 773..899 99 <- Minus
3L 16407021..16407359 434..772 100 <- Minus
3L 16411002..16411423 12..433 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:35:18 Download gff for BS09679.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16398819..16398945 773..899 99 <- Minus
arm_3L 16400121..16400459 434..772 100 <- Minus
arm_3L 16404102..16404523 12..433 99   Minus

BS09679.complete Sequence

1289 bp (1289 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ638828

> BS09679.complete
GAAGTTATCAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGG
AAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCA
GCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGT
GGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAA
AGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTG
GCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAA
TGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCT
CGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAG
ACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGAT
GCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGG
AGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATAC
GAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTA
CGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACT
GGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTG
CAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTT
TAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGG
CGCACGGCATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCGGCAAG
GACGACCTGAAGGTGCTCAGCGAGATGCTCGACTGCAAGCCTTTCTTCTT
CGGCGACGAGCCCACCACCCTGGATGTGGTGGCCTTCGCTGTCCTCTCGC
AGCTCCACTATCTGTCCAAGGACATTGCGTATCCGCTGCGCGACTACATG
ACCGAGAAGTGCCCCAACTTGATTGGCCACGTATCTCGCATGAAGGACAA
GTGCTTCCCCGACTGGGACGAGATCTGCACGAAGCTGGACCTCAATGCGC
ACATTCCCAAGCCAGAGCCCGAGACCAAGGAGGGCAAGGAGGGTGGCGAG
CAGGAGAAATCAAACGAACAGGAGGGCACTGAGGGCGACAAGATCGAGAA
GGAGTTGGAGAAGGACAAGTCAAACGAGAAGGAGTCGACCGAGGAGAACA
AAGAGAAGGAGGAAACAAAGTAAAAGCTTTCTAGACCAT

BS09679.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
fax-RA 1257 CG4609-PA 1..1257 17..1273 6285 100 Plus
fax-RC 1248 CG4609-PC 1..1248 17..1273 6115 99.3 Plus
fax-RB 849 CG4609-PB 10..849 434..1273 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
fax-RA 3988 CG4609-RA 406..1668 12..1274 6300 99.9 Plus
fax-RC 3153 CG4609-RC 362..1615 12..1274 6130 99.2 Plus
fax-RF 3218 CG4609-RF 58..898 434..1274 4205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16411002..16411423 433..12 2095 99.8 Minus
3L 28110227 3L 16405501..16405849 1117..769 1745 100 Minus
3L 28110227 3L 16407021..16407361 772..432 1705 100 Minus
3L 28110227 3L 16405326..16405428 1219..1117 515 100 Minus
3L 28110227 3L 16405116..16405172 1274..1218 285 100 Minus
Blast to na_te.dros performed 2014-11-28 00:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4503..4564 596..658 114 66.7 Plus

BS09679.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:35 Download gff for BS09679.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1257 17..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:35 Download gff for BS09679.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 417..1679 12..1274 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:29 Download gff for BS09679.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 422..1676 17..1271 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:35 Download gff for BS09679.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 417..1679 12..1274 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:48 Download gff for BS09679.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 411..1665 17..1271 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:48 Download gff for BS09679.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16405119..16405170 1220..1271 100 <- Minus
3L 16405326..16405428 1117..1219 100 <- Minus
3L 16405502..16405845 773..1116 100 <- Minus
3L 16407021..16407359 434..772 100 <- Minus
3L 16411002..16411418 17..433 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:29 Download gff for BS09679.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16398219..16398270 1220..1271 100 <- Minus
arm_3L 16398426..16398528 1117..1219 100 <- Minus
arm_3L 16398602..16398945 773..1116 100 <- Minus
arm_3L 16400121..16400459 434..772 100 <- Minus
arm_3L 16404102..16404518 17..433 100   Minus

BS09679.pep Sequence

Translation from 16 to 1272

> BS09679.pep
MASEVAQIPAEETPAVAAAEKSEEPEKSAAPPADSAAAPAAAPAVEKAED
ADGEKKDGEAGKQDKQQDGEEPKKDEAVAAPVATKSEAPPAQKFNVHKTN
FEKDIIYLYQFSRTPLLPSLSPYCLKVETWLRLVGLKYENVDHKMRFRSK
KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM
LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG
RKWFQGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPT
TLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDW
DEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKD
KSNEKESTEENKEKEETK*

BS09679.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
fax-PA 418 CG4609-PA 1..418 1..418 2187 100 Plus
fax-PC 415 CG4609-PC 1..415 1..418 2151 99.3 Plus
fax-PB 282 CG4609-PB 4..282 140..418 1478 100 Plus
fax-PF 274 CG4609-PF 1..274 145..418 1449 100 Plus
fax-PD 279 CG4609-PD 4..279 140..418 1442 98.9 Plus