Clone Sequence Records
BS09685.3prime Sequence
841 bp (760 high quality bases) assembled on 2006-04-19
> BS09685.3prime
ATGGTCTAGAAAGCTTCTACTTAAGTACATCAAAAATGCTGAGGTTGTCC
TCCCGACTACGTTGCTCCATGTGCGCCTTGGCGATGGCTATGAACTGTGG
ACGGGAAAGCATTGAATAGGCGGGTACCAGCAACGATGAGGCAAGCATGT
GCAGCTCCTTGTGCCCACTGCAGAACATATCGATGCCTAGTTCCAGGGCG
CTTCCAAAGTCCGATTCATCAACTGCTATGTTGGCTGCGTTGGCCACCGG
CTGCAGCTTCTCCAGAACCGCCTGCTTGGCGGCTCCATTATCGACGTCCT
TCCGCTCAAGCATTGCCAGCATCTTCTTGAGTTCGGAATCGCTGACAGCC
AGCGGGCGGTATCCCACTTCTGTCTTCTGGTCAAAGGGCACAACAATGCC
GGCTCGGTGGAATGTCTTGGCCACAACACGCTTGTTGCGCTCCCGCTGCA
GTCGGTCCAGCTGGGCCAGTTCTAGGGAATTGTCACTCAGGTATTTTGCC
ACCGCCTTTTTGGTCCCCGCCAACTGCCCGCATGAGAACGGAGTGGCCGC
AAAATCGTGCTCCAGGTAGTAGAGGAAAGCATCGAAGGCATTTCCAGCGA
CGAATTGGAACTGGCAGCCTTTCGCAGAGTCGTTGCGGGCTATTAAGAGA
TTTTCCTTGTCCTGCGGCACATCGCGCCAGTAACCGTAGTGAATCCCAGT
GCCTCGGCGCACGAAGATCGTCTGAAATTCTGGTGGATCGTAGTAAAAAC
GCCAGTGGCGCAGGTAGTCTCCCGGTTCGCCTAGTTTGGCGCCGTGAAAT
TTACCGGCTAGGAACTCAAAAGGACCCACCAACTGCAGTTG
BS09685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1218-PA | 1350 | CG1218-RA | 526..1350 | 841..17 | 4100 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1218-RA | 1505 | CG1218-RA | 620..1444 | 841..17 | 4110 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5792498..5793322 | 841..17 | 4110 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:54:17 has no hits.
BS09685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:06 Download gff for
BS09685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-PA | 526..1350 | 17..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:43 Download gff for
BS09685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-PA | 526..1350 | 17..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:16:39 Download gff for
BS09685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-RA | 620..1452 | 10..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:37 Download gff for
BS09685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-RA | 620..1452 | 10..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:37 Download gff for
BS09685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5792498..5793330 | 10..841 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:16:39 Download gff for
BS09685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1618220..1619052 | 10..841 | 99 | | Minus |
BS09685.5prime Sequence
878 bp (787 high quality bases) assembled on 2006-04-19
> BS09685.5prime
GAAGTTATCAGTCGACATGCCAAAAGAAGATTGCAAATACTGGGATAAGT
GCTATCAGCAGAATCCCGCACATTTGTCCAAATACAATCATCCGAAAAAG
CAACAAGAACACGAAGTGGACGGCGCAGAAGGCAAAAAAGTGGCGCCAAA
AAGAAGTGCATCCTCGCAGTCTGGTGAACAGAAAAAGGAAGAACAAACGG
AGCCGGTGAACAAGGATAAGTCCAATACGAGTGCTTCAAGTACGGAGATG
GTGAACAAGGATACAGCCAAGGGCAGTTATGAAGCCGAAACCGAGGAGCT
TCACAAAGAGGCCATGAGCAACATATCCGGAAAGAACTACATGGAGATCT
TGGAGAAGCGCATCCGCCTGTCCGTGCAGAAGGAGTACGACAATCTCTGC
GAGTCCAACGAGTTCATTCGACACAAGTTCCTTGTCGAAATGCCGCCGGA
CTTCTACGAATTTTGGAAGTTTGTGGGAAGCTTAAAAATTGATCCTGCGA
AGCCCAAGGATGCTGGCTTGGAGCACCTAGACAAAGTATTTCAACTGCAG
TTGGTGGGTCCCTTTGAGTTCCTAGCCGGTAAATTTCACGGCGCCAAACT
AGGCGAACCGGGAGACTACCTGCGCCACTGGCGTTTTTACTACGATCCAC
CAGAATTTCAGACGATCTTCGTGCGCCGAGGCACTGGGATTCACTACGGT
TACTGGCGCGATGTGCCGCAGGACAAGGAAAATCTCTTAATAGCCCGCAA
CGACTCTGCGAAAGGCTGCCAGTTCCAATTCGTCGCTGGAAATGCCTTCG
ATGCTTTCCTCTACTACCTGGAGCACGATTTTGCGGCCACTCCGTTCTCA
TGCGGGCAGTTGGCGGGGACCAAAAAGG
BS09685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1218-PA | 1350 | CG1218-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1218-RA | 1505 | CG1218-RA | 95..956 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5791973..5792834 | 17..878 | 4310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:39:02 has no hits.
BS09685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:07 Download gff for
BS09685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:44 Download gff for
BS09685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:01:41 Download gff for
BS09685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-RA | 93..956 | 14..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:28 Download gff for
BS09685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-RA | 93..956 | 14..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:28 Download gff for
BS09685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5791971..5792834 | 14..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:01:41 Download gff for
BS09685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1617693..1618556 | 14..878 | 99 | | Plus |
BS09685.complete Sequence
1382 bp (1382 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636465
> BS09685.complete
GAAGTTATCAGTCGACATGCCAAAAGAAGATTGCAAATACTGGGATAAGT
GCTATCAGCAGAATCCCGCACATTTGTCCAAATACAATCATCCGAAAAAG
CAACAAGAACACGAAGTGGACGGCGCAGAAGGCAAAAAAGTGGCGCCAAA
AAGAAGTGCATCCTCGCAGTCTGGTGAACAGAAAAAGGAAGAACAAACGG
AGCCGGTGAACAAGGATAAGTCCAATACGAGTGCTTCAAGTACGGAGATG
GTGAACAAGGATACAGCCAAGGGCAGTTATGAAGCCGAAACCGAGGAGCT
TCACAAAGAGGCCATGAGCAACATATCCGGAAAGAACTACATGGAGATCT
TGGAGAAGCGCATCCGCCTGTCCGTGCAGAAGGAGTACGACAATCTCTGC
GAGTCCAACGAGTTCATTCGACACAAGTTCCTTGTCGAAATGCCGCCGGA
CTTCTACGAATTTTGGAAGTTTGTGGGAAGCTTAAAAATTGATCCTGCGA
AGCCCAAGGATGCTGGCTTGGAGCACCTAGACAAAGTATTTCAACTGCAG
TTGGTGGGTCCCTTTGAGTTCCTAGCCGGTAAATTTCACGGCGCCAAACT
AGGCGAACCGGGAGACTACCTGCGCCACTGGCGTTTTTACTACGATCCAC
CAGAATTTCAGACGATCTTCGTGCGCCGAGGCACTGGGATTCACTACGGT
TACTGGCGCGATGTGCCGCAGGACAAGGAAAATCTCTTAATAGCCCGCAA
CGACTCTGCGAAAGGCTGCCAGTTCCAATTCGTCGCTGGAAATGCCTTCG
ATGCTTTCCTCTACTACCTGGAGCACGATTTTGCGGCCACTCCGTTCTCA
TGCGGGCAGTTGGCGGGGACCAAAAAGGCGGTGGCAAAATACCTGAGTGA
CAATTCCCTAGAACTGGCCCAGCTGGACCGACTGCAGCGGGAGCGCAACA
AGCGTGTTGTGGCCAAGACATTCCACCGAGCCGGCATTGTTGTGCCCTTT
GACCAGAAGACAGAAGTGGGATACCGCCCGCTGGCTGTCAGCGATTCCGA
ACTCAAGAAGATGCTGGCAATGCTTGAGCGGAAGGACGTCGATAATGGAG
CCGCCAAGCAGGCGGTTCTGGAGAAGCTGCAGCCGGTGGCCAACGCAGCC
AACATAGCAGTTGATGAATCGGACTTTGGAAGCGCCCTGGAACTAGGCAT
CGATATGTTCTGCAGTGGGCACAAGGAGCTGCACATGCTTGCCTCATCGT
TGCTGGTACCCGCCTATTCAATGCTTTCCCGTCCACAGTTCATAGCCATC
GCCAAGGCGCACATGGAGCAACGTAGTCGGGAGGACAACCTCAGCATTTT
TGATGTACTTAAGTAGAAGCTTTCTAGACCAT
BS09685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1218-RA | 1350 | CG1218-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1218-RA | 1505 | CG1218-RA | 95..1444 | 17..1366 | 6750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5791973..5793322 | 17..1366 | 6750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:00:33 has no hits.
BS09685.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:36 Download gff for
BS09685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:37 Download gff for
BS09685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-RA | 86..1445 | 14..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:26 Download gff for
BS09685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-RA | 95..1444 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:36 Download gff for
BS09685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-RA | 86..1445 | 14..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:55 Download gff for
BS09685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1218-RA | 95..1444 | 17..1366 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:55 Download gff for
BS09685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5791973..5793322 | 17..1366 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:26 Download gff for
BS09685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1617695..1619044 | 17..1366 | 100 | | Plus |
BS09685.pep Sequence
Translation from 16 to 1365
> BS09685.pep
MPKEDCKYWDKCYQQNPAHLSKYNHPKKQQEHEVDGAEGKKVAPKRSASS
QSGEQKKEEQTEPVNKDKSNTSASSTEMVNKDTAKGSYEAETEELHKEAM
SNISGKNYMEILEKRIRLSVQKEYDNLCESNEFIRHKFLVEMPPDFYEFW
KFVGSLKIDPAKPKDAGLEHLDKVFQLQLVGPFEFLAGKFHGAKLGEPGD
YLRHWRFYYDPPEFQTIFVRRGTGIHYGYWRDVPQDKENLLIARNDSAKG
CQFQFVAGNAFDAFLYYLEHDFAATPFSCGQLAGTKKAVAKYLSDNSLEL
AQLDRLQRERNKRVVAKTFHRAGIVVPFDQKTEVGYRPLAVSDSELKKML
AMLERKDVDNGAAKQAVLEKLQPVANAANIAVDESDFGSALELGIDMFCS
GHKELHMLASSLLVPAYSMLSRPQFIAIAKAHMEQRSREDNLSIFDVLK*
BS09685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1218-PA | 449 | CG1218-PA | 1..449 | 1..449 | 2356 | 100 | Plus |
