Clone Sequence Records
BS09686.3prime Sequence
907 bp (845 high quality bases) assembled on 2006-04-19
> BS09686.3prime
ATGGTCTAGAAAGCTTCTAGGACCAGCCGCCGGTAAGTTTGTGGAAAAGC
TCCTCGTTCAGGGTCTGGTTGGTGTCCTTGGATCGCATGGACATGAAAAT
GTAACCACCGATGAACTCGTGCACCACTTTACAGTCGGCTGAGTGGCAGG
AGAAGACCACATTCTCGTCTTCAAACTGAATCATCATGCACTTTATGTTC
CAGTTGACGTTCCACGCCTTCATGGTGTTATATCGCCAGGTCTTGATGTG
ATCTCCCGAACTCAGATCCATGCGCATAATGCGGTTGTGGGCCACGCCGA
GCAGCTCCTCCTTCCGATGCCCGTCGAACTTAATGATGAACAGGCTTACT
CCAAAGTCAGGTAACGAACGCCATGCCTGGATGTACTTCAGTTTTGAATC
TAAAGCATTCAGCTCCCGAACGTTGGCATGTGCTTCGAGGATCCGCTGGA
CTGCCTTGTTCGACAACTTGCGGATGATCTTGGGCGACAGATAATCAACT
GCTTCCACAGAGCGAGGATCGATGTTTACATGAACTCCGTGTGCGGGTCG
CTGCATCTGCAGTAGCGAGAGTATGCTGTCCACTTCACTCTCGTACGAGC
TATCCGCCAGGGATCTTCCCTTGGCCGCCAAACGACAAGCAGCCATCCAC
TTGGCGTACTGCTGCTCGTTCTCGCAGCGCACCCACACCTCACTGTTGAT
ACCGTGGCCACCATCAGGAGAGACCTCCAGCCGGATAGCATACTTTCCCT
GGGACAGGTTTACATCCGGAGTTACTTCGCAGCCCTTCAGGTTAATGCTT
ATGGCANGCGCAACACGTCGCGAATCTTCGGCGTTCTTGAACAGATGCAA
ATGCAGATCCCGATAGGTGAAGTAGTAGCGCTTATAGCCGCGCAGCGTGA
ATCTTTG
BS09686.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7729-PA | 2148 | Fit2-RA | 1258..2148 | 907..17 | 4436 | 99.8 | Minus |
| CG14991-PA | 2127 | Fit1-RA | 2005..2123 | 139..21 | 295 | 89.9 | Minus |
| CG14991-PB | 2127 | Fit1-RB | 2005..2123 | 139..21 | 295 | 89.9 | Minus |
| CG14991-PA | 2127 | Fit1-RA | 1447..1526 | 697..618 | 150 | 87.5 | Minus |
| CG14991-PB | 2127 | Fit1-RB | 1447..1526 | 697..618 | 150 | 87.5 | Minus |
| CG14991-PA | 2127 | Fit1-RA | 1891..1968 | 253..176 | 140 | 87.1 | Minus |
| CG14991-PB | 2127 | Fit1-RB | 1891..1968 | 253..176 | 140 | 87.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2790 | CG7729-RA | 1588..2478 | 907..17 | 4444 | 99.9 | Minus |
| Fit1-RB | 3469 | CG14991-RB | 1873..2735 | 883..21 | 1339 | 77.5 | Minus |
| Fit1-RA | 3119 | CG14991-RA | 1957..2819 | 883..21 | 1339 | 77.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17025915..17026805 | 907..17 | 4444 | 99.9 | Minus |
| 3L | 28110227 | 3L | 4105520..4106382 | 883..21 | 1289 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:32:10 has no hits.
BS09686.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:08 Download gff for
BS09686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-PA | 1258..2148 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:46 Download gff for
BS09686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7729-PA | 1258..2148 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:12:33 Download gff for
BS09686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 1588..2487 | 7..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:06:41 Download gff for
BS09686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 1588..2487 | 7..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:06:41 Download gff for
BS09686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17025915..17026814 | 7..907 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:12:33 Download gff for
BS09686.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17019015..17019914 | 7..907 | 99 | | Minus |
BS09686.5prime Sequence
866 bp (839 high quality bases) assembled on 2006-04-19
> BS09686.5prime
GAAGTTATCAGTCGACATGATCCACGTCGGCGAGAACTCGTGGAATCTGC
GGATCTTCATCACGGATCTGGCGCTGGAGAAGACGATGCGCGTGCGCGGT
GACCAGCACATTGGGGGCATTATGCTGCAACTGGTGGATCCGGAGAATCC
CAAGGACTGGTCGGATCATGCTCTGTGGTGGCCAGCGCGGAATGTTTGGC
TCAGCCGAACCAAACTTACCCTGGATCAGTGCGGTGTCCAGGCGGATAGC
CTTCTGCACTTCACGCCCATGCACAAGATACTGCGGGTGCAGCTGCCGGA
TTTGAGGTACCTGGACTCCCGGGTGGATTACTCCGTAAAGACGTTCTCGG
CGGTGGTTAATCTATGCAAGCAGTTGGATATCCGCTATCCGGAGGAGTTG
TCCCTGTGCAAACCACTGGAAGCGGAGCACCTGAAGCGTAACTTCGCCCA
GGTGCCGCATCAGAAGCGAGTGCCAATCGCTGAACCAGATGGCACCACTT
ACCTGCAGCCTGCTGCGGACACCAACTCATTTGTGCCCATCAGCACGTCG
TTTCATGGAGAAGGCGGAAGCACGGGCAGTCTGGACAAGCCCTCTGCACC
GGGATCCTTCTTCTGTGCTCCTCTGTCGCCGCACAATCACCGAGCGCGCT
CGCCAGTGCGCACCGTATCACCTTTTCCAGGCACCTGGAAACAGAGCCAG
CTTGGCTATGCCACGTACGATTCGAGCTCCTCAAGTCTTGGCGATTTCCA
GGAGAATTTGGCCAGCTCTCCGCCCACCCCATGCGCGGATGTGCGAGCTC
TTCAGCTGCGCCCCAAGTCGCTGGTGGAGAAGGCTCGTCTGAATGTGGGC
TGGCTAGATTCCTCGC
BS09686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7729-PA | 2148 | Fit2-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
| CG14991-PA | 2127 | Fit1-RA | 236..276 | 252..292 | 155 | 95.1 | Plus |
| CG14991-PB | 2127 | Fit1-RB | 236..276 | 252..292 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2790 | CG7729-RA | 330..1180 | 16..866 | 4255 | 100 | Plus |
| Fit1-RB | 3469 | CG14991-RB | 613..1135 | 17..542 | 620 | 75.4 | Plus |
| Fit1-RA | 3119 | CG14991-RA | 697..1219 | 17..542 | 620 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17024657..17025507 | 16..866 | 4255 | 100 | Plus |
| 3L | 28110227 | 3L | 4104260..4104702 | 17..459 | 610 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:52:56 has no hits.
BS09686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:09 Download gff for
BS09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:47 Download gff for
BS09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7729-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:41:08 Download gff for
BS09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 324..1180 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:10 Download gff for
BS09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 324..1180 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:10 Download gff for
BS09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17024651..17025507 | 9..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:41:08 Download gff for
BS09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17017751..17018607 | 9..866 | 99 | | Plus |
BS09686.complete Sequence
2180 bp assembled on 2008-01-16
GenBank Submission: FJ636466
> BS09686.complete
GAAGTTATCAGTCGACATGATCCACGTCGGCGAGAACTCGTGGAATCTGC
GGATCTTCATCACGGATCTGGCGCTGGAGAAGACGATGCGCGTGCGCGGT
GACCAGCACATTGGGGGCATTATGCTGCAACTGGTGGATCCGGAGAATCC
CAAGGACTGGTCGGATCATGCTCTGTGGTGGCCAGCGCGGAATGTTTGGC
TCAGCCGAACCAAACTTACCCTGGATCAGTGCGGTGTCCAGGCGGATAGC
CTTCTGCACTTCACGCCCATGCACAAGATACTGCGGGTGCAGCTGCCGGA
TTTGAGGTACCTGGACTCCCGGGTGGATTACTCCGTAAAGACGTTCTCGG
CGGTGGTTAATCTATGCAAGCAGTTGGATATCCGCTATCCGGAGGAGTTG
TCCCTGTGCAAACCACTGGAAGCGGAGCACCTGAAGCGTAACTTCGCCCA
GGTGCCGCATCAGAAGCGAGTGCCAATCGCTGAACCAGATGGCACCACTT
ACCTGCAGCCTGCTGCGGACACCAACTCATTTGTGCCCATCAGCACGTCG
TTTCATGGAGAAGGCGGAAGCACGGGCAGTCTGGACAAGCCCTCTGCACC
GGGATCCTTCTTCTGTGCTCCTCTGTCGCCGCACAATCACCGAGCGCGCT
CGCCAGTGCGCACCGTATCACCTTTTCCAGGCACCTGGAAACAGAGCCAG
CTTGGCTATGCCACGTACGATTCGAGCTCCTCAAGTCTTGGCGATTTCCA
GGAGAATTTGGCCAGCTCTCCGCCCACCCCATGCGCGGATGTGCGAGCTC
TTCAGCTGCGCCCCAAGTCGCTGGTGGAGAAGGCTCGTCTGAATGTGGGC
TGGCTAGATTCCTCGCTGTCCATCATGGAACAGGGCATACGCGAGTACGA
CACGCTGTGCCTGCGCTTCAAGTATTTCACTTTTTTCGATCTAAATCCCA
AGTGCGACCAGGTGCGCATCAATCAGCTGTACGAGCAGGCCAAGTGGAGT
GTTCTGAACGAGGAGTTGGATTGCACAGAGGAGGAGAGCCTTATGTTTGC
CGCCCTCCAGTTCCAGGTGAACCATCACGTAGATCATACACCCCAGGGTG
CAGCAGTGGACTCGGGCATTGAAACTTCCAGTCAGGAGAATGACAACGAA
GACGAGATTGATTCGGCACTGAAAGAGCTACAGATTACGCTGGAGGGACC
GGACTACGGCGGAGACTCGCGGAATATTACACGCATACCAGAGCTCTCTG
ACTATTTGCGTTACTTGAAGCCGCAAAGATTCACGCTGCGCGGCTATAAG
CGCTACTACTTCACCTATCGGGATCTGCATTTGCATCTGTTCAAGAACGC
CGAAGATTCGCGACGTGTTGCGCCTGCCATAAGCATTAACCTGAAGGGCT
GCGAAGTAACTCCGGATGTAAACCTGTCCCAGGGAAAGTATGCTATCCGG
CTGGAGGTCTCTCCTGATGGTGGCCACGGTATCAACAGTGAGGTGTGGGT
GCGCTGCGAGAACGAGCAGCAGTACGCCAAGTGGATGGCTGCTTGTCGTT
TGGCGGCCAAGGGAAGATCCCTGGCGGATAGCTCGTACGAGAGTGAAGTG
GACAGCATACTCTCGCTACTGCAGATGCAGCGACCCGCACACGGAGTTCA
TGTAAACATCGATCCTCGCTCTGTGGAAGCAGTTGATTATCTGTCGCCCA
AGATCATCCGCAAGTTGTCGAACAAGGCAGTCCAGCGGATCCTCGAAGCA
CATGCCAACGTTCGGGAGCTGAATGCTTTAGATTCAAAACTGAAGTACAT
CCAGGCATGGCGTTCGTTACCTGACTTTGGAGTAAGCCTGTTCATCATTA
AGTTCGACGGGCATCGGAAGGAGGAGCTGCTCGGCGTGGCCCACAACCGC
ATTATGCGCATGGATCTGAGTTCGGGAGATCACATCAAGACCTGGCGATA
TAACACCATGAAGGCGTGGAACGTCAACTGGAACATAAAGTGCATGATGA
TTCAGTTTGAAGACGAGAATGTGGTCTTCTCCTGCCACTCAGCCGACTGT
AAAGTGGTGCACGAGTTCATCGGTGGTTACATTTTCATGTCCATGCGATC
CAAGGACACCAACCAGACCCTGAACGAGGAGCTTTTCCACAAACTTACCG
GCGGCTGGTCCTAGAAGCTTTCTAGACCAT
BS09686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2148 | CG7729-PA | 1..2148 | 17..2164 | 10740 | 100 | Plus |
| Fit1-RB | 2127 | CG14991-PB | 781..2123 | 812..2160 | 1850 | 76 | Plus |
| Fit1-RA | 2127 | CG14991-PA | 781..2123 | 812..2160 | 1850 | 76 | Plus |
| Fit1-RB | 2127 | CG14991-PB | 1..443 | 17..459 | 610 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-RA | 2790 | CG7729-RA | 330..2478 | 16..2164 | 10745 | 100 | Plus |
| Fit1-RB | 3469 | CG14991-RB | 1393..2735 | 812..2160 | 1850 | 76 | Plus |
| Fit1-RA | 3119 | CG14991-RA | 1477..2819 | 812..2160 | 1850 | 76 | Plus |
| Fit1-RB | 3469 | CG14991-RB | 613..1055 | 17..459 | 610 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17024657..17026805 | 16..2164 | 10745 | 100 | Plus |
| 3L | 28110227 | 3L | 4105040..4106382 | 812..2160 | 1850 | 76 | Plus |
| 3L | 28110227 | 3L | 4104260..4104702 | 17..459 | 610 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:27:23 has no hits.
BS09686.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:28 Download gff for
BS09686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 1..2148 | 17..2164 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:54 Download gff for
BS09686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 329..2476 | 17..2164 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:37 Download gff for
BS09686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 331..2478 | 17..2164 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:28 Download gff for
BS09686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 322..2485 | 9..2174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:59 Download gff for
BS09686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit2-RA | 331..2478 | 17..2164 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:59 Download gff for
BS09686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17024658..17026805 | 17..2164 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:37 Download gff for
BS09686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17017758..17019905 | 17..2164 | 100 | | Plus |
BS09686.pep Sequence
Translation from 16 to 2163
> BS09686.pep
MIHVGENSWNLRIFITDLALEKTMRVRGDQHIGGIMLQLVDPENPKDWSD
HALWWPARNVWLSRTKLTLDQCGVQADSLLHFTPMHKILRVQLPDLRYLD
SRVDYSVKTFSAVVNLCKQLDIRYPEELSLCKPLEAEHLKRNFAQVPHQK
RVPIAEPDGTTYLQPAADTNSFVPISTSFHGEGGSTGSLDKPSAPGSFFC
APLSPHNHRARSPVRTVSPFPGTWKQSQLGYATYDSSSSSLGDFQENLAS
SPPTPCADVRALQLRPKSLVEKARLNVGWLDSSLSIMEQGIREYDTLCLR
FKYFTFFDLNPKCDQVRINQLYEQAKWSVLNEELDCTEEESLMFAALQFQ
VNHHVDHTPQGAAVDSGIETSSQENDNEDEIDSALKELQITLEGPDYGGD
SRNITRIPELSDYLRYLKPQRFTLRGYKRYYFTYRDLHLHLFKNAEDSRR
VAPAISINLKGCEVTPDVNLSQGKYAIRLEVSPDGGHGINSEVWVRCENE
QQYAKWMAACRLAAKGRSLADSSYESEVDSILSLLQMQRPAHGVHVNIDP
RSVEAVDYLSPKIIRKLSNKAVQRILEAHANVRELNALDSKLKYIQAWRS
LPDFGVSLFIIKFDGHRKEELLGVAHNRIMRMDLSSGDHIKTWRYNTMKA
WNVNWNIKCMMIQFEDENVVFSCHSADCKVVHEFIGGYIFMSMRSKDTNQ
TLNEELFHKLTGGWS*
BS09686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit2-PA | 715 | CG7729-PA | 1..715 | 1..715 | 3799 | 100 | Plus |
| Fit1-PB | 708 | CG14991-PB | 1..708 | 1..715 | 2873 | 75.6 | Plus |
| Fit1-PA | 708 | CG14991-PA | 1..708 | 1..715 | 2873 | 75.6 | Plus |
