Clone BS09687 Report

Search the DGRC for BS09687

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptEloA-RB
Protein status:BS09687.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09687.3prime Sequence

941 bp (806 high quality bases) assembled on 2006-04-19

> BS09687.3prime
ATGGTCTAGAAAGCTTCTATCGTTTGAGACGTCCGCGCATAAACTGCAAG
GTCTTCGCCATTAGAGGTGCCTTCTTCGATCGCGCTGGTCCAGCCCCCAC
TTGGGCCGTGTCCCTGGCAGCGGCCAGCACACGTAGTCGGGCATCGCCCA
CCTTGGCTGCATTTGGAGTCACGCTGGACAAGGCGGCCACTCGGGCGGCT
GGAGTGGCAATTAGCTTGCCCTTGGTGCCATATTGCTCTTGCTTGCGCTG
CACACTACGCGGCGGCTTCACCATTGAGTCCACAAAGGCCAATTGCGTCT
TGCGCACAGGCGCCTCGCTTATCTTTTGCGATGCCTTGATGCTCTCGGCC
AGAATGCTAAGTTTGCGATCCTTTTCCTCTTGGCAGCGCAAAAACATTTC
GCGCCACGTTTCCATCTCTTCACGCCGCTGACTGCGACAGTGACGTTGGA
CATGCTGTTGCCATAGGACATCACTGTCATCCATTAAATAAGGATTGTAC
TCCTCAAAGTTAAGCAGCTGCTGGGGGGTAGCTCGCTCCAAAACGGGACG
TAGGACCTCAAACGGAACGCCACCCGTATACTCCAATGCATCAATATTCT
TTTGCAGCACGCGGGTGCAGAGATCAAAAAGGGAAGGGACCTGCAGGATT
TGACCAGTTCTCACACCCGAATAGATCTTGGTGCGCATAGTTTTGGAAGA
GATGCCCTGCGCTAGAGCTTCTGACTCATTAAAGTATCGTGATGCTTGCG
CCTTGTGTGAGCCACCCTGGTTAAAGACGACGTCCATAACTGTCTGATTT
AATGGCATGGGCTTGTAGTTATTGGATATGGTGGGAAAGTCTAGTGCAAT
GTTTGGATCCAAGGGCTCCAGCTTAGCTGTGGATGCCAACAGTTCGGGTT
TTTTTGGAGGTCGGTCGACTGCTAGTTGAGAGTGCCTCTTT

BS09687.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6755-PA 1932 EloA-RA 1045..1932 904..17 4390 99.7 Minus
CG6755-PB 1701 EloA-RB 814..1701 904..17 4390 99.7 Minus
CG6755-PA 1932 EloA-RA 1009..1050 941..900 210 100 Minus
CG6755-PB 1701 EloA-RB 778..819 941..900 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-RB 2697 CG6755-RB 1151..2075 941..16 4575 99.7 Minus
EloA-RA 2869 CG6755-RA 1323..2247 941..16 4575 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23254017..23254310 389..96 1470 100 Minus
3R 32079331 3R 23253325..23253542 901..684 1060 99.1 Minus
3R 32079331 3R 23253752..23253952 589..389 1005 100 Minus
3R 32079331 3R 23253600..23253695 684..589 480 100 Minus
3R 32079331 3R 23254368..23254449 97..16 410 100 Minus
3R 32079331 3R 23253231..23253269 941..903 195 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:32:04 has no hits.

BS09687.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:10 Download gff for BS09687.3prime
Subject Subject Range Query Range Percent Splice Strand
EloA-PA 1009..1932 17..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:49 Download gff for BS09687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6755-PB 778..1701 17..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:12:31 Download gff for BS09687.3prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 1323..2255 7..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:06:26 Download gff for BS09687.3prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 1323..2255 7..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:06:26 Download gff for BS09687.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23254018..23254309 97..388 100 -> Minus
3R 23254369..23254457 7..96 95   Minus
3R 23253231..23253269 902..941 97 -> Minus
3R 23253325..23253542 684..901 99 -> Minus
3R 23253601..23253695 589..683 100 -> Minus
3R 23253753..23253952 389..588 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:12:31 Download gff for BS09687.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19078953..19078991 902..941 97 -> Minus
arm_3R 19079047..19079264 684..901 99 -> Minus
arm_3R 19079323..19079417 589..683 100 -> Minus
arm_3R 19079475..19079674 389..588 100 -> Minus
arm_3R 19079740..19080031 97..388 100 -> Minus
arm_3R 19080091..19080179 7..96 95   Minus

BS09687.5prime Sequence

874 bp (825 high quality bases) assembled on 2006-04-19

> BS09687.5prime
GAAGTTATCAGTCGACATGGTGGCGAAGGAGGACCCTTCGATCGCATCTA
CGCCTACAGCCATACATAACGAAGAGGACTCGGGCAAGACCAAGTCCAGC
GACGAGGATCCCGACCAGGAGAACAAGGGCGGCAACTCATCCAGCGGCGA
GGACTTGAACACCAGCAAGCACAAGTCAAAGCATGCCAAGAGCACCAAGC
ATGAGCGTAGCAGCAGCAGCCGATCTCACTCCAAGAGTAGGTCTGACTCG
GATAAGAAGCACAAGAGCTCTCGCCACGATAAATCCAAGGATAGAGATAA
AGATCGGGAGGGTCAGAAGGAAGCTAAGGAGCACAAAGAAAAGAAGTCAA
ATGGCGAGCACAAGTCAAAGGATTCCAGCAAATCCAGCAGCAGTCACAAG
AGCAGCAAATCCGAGAGCCACAAGAGCGAACACACCAAAAGCAAGCACGA
AAAGGACAAAACTTCTCACAGTGAATTAAAGGAAGTCAAAGACAAGTCGA
GCAAACACAAATCATCGTCCTCCAAGTCATCAAAGCGCTCCCATAGTCCC
CCACGCCACGAGGAGGAGTCCCAAAAAGCAAAGATACCAAAAGTTAAATC
GAAATCTGAGGAAGATTCCGCTGATGGTTTTGACTCCAGCATGGGCGCAA
ATTTTGACGATGTTCTTGGTCTGCTAAACATACCCATAAGTAGCAAGAAG
AGCAGCAGCAACAGCAAGAGCAAGTTTGTCGCCAAGCCAACTGCAGCCCC
TTCCTCGTCAGCTCTATCAGCACCTACGACTGCTGGGTCATCTAAAGAGG
CACTCTCAACTAGCAGTCGACCGACCTCCAAAAAACCCGAACTGTTGGCA
TCCACAGCTAAGCTGGAGCCCTTG

BS09687.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6755-PA 1932 EloA-RA 232..1089 17..874 4290 100 Plus
CG6755-PB 1701 EloA-RB 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-RB 2697 CG6755-RB 374..1231 17..874 4290 100 Plus
EloA-RA 2869 CG6755-RA 546..1403 17..874 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23252399..23252837 17..455 2195 100 Plus
3R 32079331 3R 23252890..23253269 453..832 1900 100 Plus
3R 32079331 3R 23253325..23253366 833..874 210 100 Plus
Blast to na_te.dros performed 2015-02-12 11:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2386..2544 677..837 169 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6707..6850 673..816 161 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2448 685..780 160 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6970 677..834 158 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2429 668..812 145 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6866 677..817 141 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2911 685..802 139 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6904 677..812 137 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6786..6878 677..774 136 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2576..2712 687..821 130 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6798 677..722 122 73.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6825..6948 677..796 116 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2611..2657 677..723 109 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6860..6897 685..722 109 76.3 Plus

BS09687.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:11 Download gff for BS09687.5prime
Subject Subject Range Query Range Percent Splice Strand
EloA-PA 227..1089 10..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:29:50 Download gff for BS09687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6755-PB 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:43 Download gff for BS09687.5prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 541..1403 10..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:48 Download gff for BS09687.5prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 541..1403 10..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:48 Download gff for BS09687.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23252394..23252836 10..454 99 -> Plus
3R 23252892..23253269 455..832 100 -> Plus
3R 23253325..23253366 833..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:43 Download gff for BS09687.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19078116..19078558 10..454 99 -> Plus
arm_3R 19078614..19078991 455..832 100 -> Plus
arm_3R 19079047..19079088 833..874 100   Plus

BS09687.complete Sequence

1733 bp assembled on 2008-01-16

GenBank Submission: FJ636467

> BS09687.complete
GAAGTTATCAGTCGACATGGTGGCGAAGGAGGACCCTTCGATCGCATCTA
CGCCTACAGCCATACATAACGAAGAGGACTCGGGCAAGACCAAGTCCAGC
GACGAGGATCCCGACCAGGAGAACAAGGGCGGCAACTCATCCAGCGGCGA
GGACTTGAACACCAGCAAGCACAAGTCAAAGCATGCCAAGAGCACCAAGC
ATGAGCGTAGCAGCAGCAGCCGATCTCACTCCAAGAGTAGGTCTGACTCG
GATAAGAAGCACAAGAGCTCTCGCCACGATAAATCCAAGGATAGAGATAA
AGATCGGGAGGGTCAGAAGGAAGCTAAGGAGCACAAAGAAAAGAAGTCAA
ATGGCGAGCACAAGTCAAAGGATTCCAGCAAATCCAGCAGCAGTCACAAG
AGCAGCAAATCCGAGAGCCACAAGAGCGAACACACCAAAAGCAAGCACGA
AAAGGACAAAACTTCTCACAGTGAATTAAAGGAAGTCAAAGACAAGTCGA
GCAAACACAAATCATCGTCCTCCAAGTCATCAAAGCGCTCCCATAGTCCC
CCACGCCACGAGGAGGAGTCCCAAAAAGCAAAGATACCAAAAGTTAAATC
GAAATCTGAGGAAGATTCCGCTGATGGTTTTGACTCCAGCATGGGCGCAA
ATTTTGACGATGTTCTTGGTCTGCTAAACATACCCATAAGTAGCAAGAAG
AGCAGCAGCAACAGCAAGAGCAAGTTTGTCGCCAAGCCAACTGCAGCCCC
TTCCTCGTCAGCTCTATCAGCACCTACGACTGCTGGGTCATCTAAAGAGG
CACTCTCAACTAGCAGTCGACCGACCTCCAAAAAACCCGAACTGTTGGCA
TCCACAGCTAAGCTGGAGCCCTTGGATCCAAACATTGCACTAGAACTTCC
CACCATATCCAATAACTACAAGCCCATGCCATTAAATCAGACAGTTATGG
ACGTCGTCTTTAACCAGGGTGGCTCACACAAGGCGCAAGCATCACGATAC
TTTAATGAGTCAGAAGCTCTAGCGCAGGGCATCTCTTCCAAAACTATGCG
CACCAAGATCTATTCGGGTGTGAGAACTGGTCAAATCCTGCAGGTCCCTT
CCCTTTTTGATCTCTGCACCCGCGTGCTGCAAAAGAATATTGATGCATTG
GAGTATACGGGTGGCGTTCCGTTTGAGGTCCTACGTCCCGTTTTGGAGCG
AGCTACCCCCCAGCAGCTGCTTAACTTTGAGGAGTACAATCCTTATTTAA
TGGATGACAGTGATGTCCTATGGCAACAGCATGTCCAACGTCACTGTCGC
AGTCAGCGGCGTGAAGAGATGGAAACGTGGCGCGAAATGTTTTTGCGCTG
CCAAGAGGAAAAGGATCGCAAACTTAGCATTCTGGCCGAGAGCATCAAGG
CATCGCAAAAGATAAGCGAGGCGCCTGTGCGCAAGACGCAATTGGCCTTT
GTGGACTCAATGGTGAAGCCGCCGCGTAGTGTGCAGCGCAAGCAAGAGCA
ATATGGCACCAAGGGCAAGCTAATTGCCACTCCAGCCGCCCGAGTGGCCG
CCTTGTCCAGCGTGACTCCAAATGCAGCCAAGGTGGGCGATGCCCGACTA
CGTGTGCTGGCCGCTGCCAGGGACACGGCCCAAGTGGGGGCTGGACCAGC
GCGATCGAAGAAGGCACCTCTAATGGCGAAGACCTTGCAGTTTATGCGCG
GACGTCTCAAACGATAGAAGCTTTCTAGACCAT

BS09687.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-RB 1701 CG6755-PB 1..1701 17..1717 8505 100 Plus
EloA-RA 1932 CG6755-PA 232..1932 17..1717 8505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-RB 2697 CG6755-RB 374..2075 17..1718 8510 100 Plus
EloA-RA 2869 CG6755-RA 546..2247 17..1718 8510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23252399..23252837 17..455 2195 100 Plus
3R 32079331 3R 23252890..23253269 453..832 1900 100 Plus
3R 32079331 3R 23254017..23254310 1345..1638 1470 100 Plus
3R 32079331 3R 23253325..23253542 833..1050 1090 100 Plus
3R 32079331 3R 23253752..23253952 1145..1345 1005 100 Plus
3R 32079331 3R 23253600..23253695 1050..1145 480 100 Plus
3R 32079331 3R 23254368..23254449 1637..1718 410 100 Plus
Blast to na_te.dros performed 2014-11-26 14:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2386..2544 677..837 169 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6707..6850 673..816 161 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2448 685..780 160 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6970 677..834 158 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2554 668..935 152 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6866 677..817 141 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2911 685..802 139 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6904 677..812 137 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6786..6878 677..774 136 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2576..2712 687..821 130 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6798 677..722 122 73.9 Plus

BS09687.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:29 Download gff for BS09687.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RB 1..1701 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:37:04 Download gff for BS09687.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RB 393..2093 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:09 Download gff for BS09687.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 546..2246 17..1717 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:29 Download gff for BS09687.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RB 388..2102 10..1727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:55 Download gff for BS09687.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 546..2246 17..1717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:55 Download gff for BS09687.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23253753..23253952 1146..1345 100 -> Plus
3R 23252399..23252836 17..454 100 -> Plus
3R 23252892..23253269 455..832 100 -> Plus
3R 23253325..23253542 833..1050 100 -> Plus
3R 23253601..23253695 1051..1145 100 -> Plus
3R 23254018..23254309 1346..1637 100 -> Plus
3R 23254369..23254448 1638..1717 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:09 Download gff for BS09687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19078121..19078558 17..454 100 -> Plus
arm_3R 19078614..19078991 455..832 100 -> Plus
arm_3R 19079047..19079264 833..1050 100 -> Plus
arm_3R 19079323..19079417 1051..1145 100 -> Plus
arm_3R 19079475..19079674 1146..1345 100 -> Plus
arm_3R 19079740..19080031 1346..1637 100 -> Plus
arm_3R 19080091..19080170 1638..1717 100   Plus

BS09687.pep Sequence

Translation from 16 to 1716

> BS09687.pep
MVAKEDPSIASTPTAIHNEEDSGKTKSSDEDPDQENKGGNSSSGEDLNTS
KHKSKHAKSTKHERSSSSRSHSKSRSDSDKKHKSSRHDKSKDRDKDREGQ
KEAKEHKEKKSNGEHKSKDSSKSSSSHKSSKSESHKSEHTKSKHEKDKTS
HSELKEVKDKSSKHKSSSSKSSKRSHSPPRHEEESQKAKIPKVKSKSEED
SADGFDSSMGANFDDVLGLLNIPISSKKSSSNSKSKFVAKPTAAPSSSAL
SAPTTAGSSKEALSTSSRPTSKKPELLASTAKLEPLDPNIALELPTISNN
YKPMPLNQTVMDVVFNQGGSHKAQASRYFNESEALAQGISSKTMRTKIYS
GVRTGQILQVPSLFDLCTRVLQKNIDALEYTGGVPFEVLRPVLERATPQQ
LLNFEEYNPYLMDDSDVLWQQHVQRHCRSQRREEMETWREMFLRCQEEKD
RKLSILAESIKASQKISEAPVRKTQLAFVDSMVKPPRSVQRKQEQYGTKG
KLIATPAARVAALSSVTPNAAKVGDARLRVLAAARDTAQVGAGPARSKKA
PLMAKTLQFMRGRLKR*

BS09687.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-PB 566 CG6755-PB 1..566 1..566 2856 100 Plus
EloA-PA 643 CG6755-PA 78..643 1..566 2856 100 Plus
PNUTS-PA 628 CG33526-PA 225..461 18..269 239 31 Plus
PNUTS-PB 628 CG33526-PB 225..461 18..269 239 31 Plus
PNUTS-PE 1135 CG33526-PE 225..461 18..269 239 31 Plus
PNUTS-PA 628 CG33526-PA 282..518 17..281 223 30.9 Plus
PNUTS-PB 628 CG33526-PB 282..518 17..281 223 30.9 Plus
PNUTS-PA 628 CG33526-PA 171..415 38..271 173 28 Plus
PNUTS-PB 628 CG33526-PB 171..415 38..271 173 28 Plus