Clone Sequence Records
BS09704.3prime Sequence
432 bp (431 high quality bases) assembled on 2006-04-19
> BS09704.3prime
ATGGTCTAGAAAGCTTTCAGATATGCTTCTGTGCAGTTGCTCTGCCTCTT
GGGGTGGTACATTGGAACTTTGCCGGGGGGCAGGAGCCCGCGCCCACGCA
AACAGCCTTGACATTTGGTTTCGTATTCCTCAACTGCAATCTGCACTGCA
GCGCCAACTTTCGGGATGATGAAAGTTTCGAAGCCGAATGAAATTCCAAT
AGGAGCGCTTCGTCTCTTTCGCGTGAGTCAACAAGGCTGAGTGCGAGCGA
GAGGGGGTAGCGGGCAGGATGCAGCTGCCGAGTCAGGCGGATAGAAACGT
TAATGTTTTGCTGCGACGCAATTTCGGCAACGGCGGAAGAAGAATGTTGT
TTGGTTTTCCCAATTTTCCCCTTTGTTTTCTTGCTTTTACCCCGCACCGC
GCGCGAACACACACACATGTCGACTGATAACT
BS09704.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31535-PA | 402 | CG31535-RA | 1..402 | 418..17 | 2010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 21:01:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4951663..4952068 | 13..418 | 2015 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-10 21:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 5081..5123 | 390..347 | 109 | 75 | Minus |
BS09704.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:32 Download gff for
BS09704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31535-PA | 1..402 | 17..418 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:19 Download gff for
BS09704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31535-PA | 1..402 | 17..418 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:10 Download gff for
BS09704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951663..4952074 | 13..428 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:10 Download gff for
BS09704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951663..4952074 | 13..428 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:42 Download gff for
BS09704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777385..777796 | 13..428 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:42 Download gff for
BS09704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777385..777796 | 13..428 | 98 | | Plus |
BS09704.5prime Sequence
432 bp (431 high quality bases) assembled on 2006-04-19
> BS09704.5prime
GAAGTTATCAGTCGACATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAA
GCAAGAAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCC
GCCGTTGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCT
GACTCGGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCC
TTGTTGACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCG
GCTTCGAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCA
GTTGAGGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCT
CCTGCCCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACT
GCACAGAAGCATATCTGAAAGCTTTCTAGACC
BS09704.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31535-PA | 402 | CG31535-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 15:58:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4951663..4952068 | 422..17 | 2015 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-10 15:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 5081..5123 | 45..88 | 109 | 75 | Plus |
BS09704.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:33 Download gff for
BS09704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31535-PA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:20 Download gff for
BS09704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31535-PA | 1..402 | 17..418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:46 Download gff for
BS09704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951663..4952074 | 7..422 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:46 Download gff for
BS09704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951663..4952074 | 7..422 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 15:00:28 Download gff for
BS09704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777385..777796 | 7..422 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 15:00:28 Download gff for
BS09704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777385..777796 | 7..422 | 98 | | Minus |
BS09704.complete Sequence
434 bp (434 high quality bases) assembled on 2006-03-25
> BS09704.complete
GAAGTTATCAGTCGACATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAA
GCAAGAAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCC
GCCGTTGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCT
GACTCGGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCC
TTGTTGACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCG
GCTTCGAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCA
GTTGAGGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCT
CCTGCCCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACT
GCACAGAAGCATATCTGAAAGCTTTCTAGACCAT
BS09704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:02:07 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:02:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4951663..4952068 | 422..17 | 2015 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-28 00:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 5081..5123 | 45..88 | 109 | 75 | Plus |
BS09704.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:24:46 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:24:46 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:01 Download gff for
BS09704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951668..4952068 | 17..417 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:01 Download gff for
BS09704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951668..4952068 | 17..417 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:27 Download gff for
BS09704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777390..777790 | 17..417 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:27 Download gff for
BS09704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777390..777790 | 17..417 | 100 | | Minus |
BS09704.pep Sequence
Translation from 16 to 417
> BS09704.pep
MCVCSRAVRGKSKKTKGKIGKTKQHSSSAVAEIASQQNINVSIRLTRQLH
PARYPLSLALSLVDSRERDEALLLEFHSASKLSSSRKLALQCRLQLRNTK
PNVKAVCVGAGSCPPAKFQCTTPRGRATAQKHI*
Sequence BS09704.pep has no blast hits.