Clone BS09704 Report

Search the DGRC for BS09704

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS09704.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS09704.3prime Sequence

432 bp (431 high quality bases) assembled on 2006-04-19

> BS09704.3prime
ATGGTCTAGAAAGCTTTCAGATATGCTTCTGTGCAGTTGCTCTGCCTCTT
GGGGTGGTACATTGGAACTTTGCCGGGGGGCAGGAGCCCGCGCCCACGCA
AACAGCCTTGACATTTGGTTTCGTATTCCTCAACTGCAATCTGCACTGCA
GCGCCAACTTTCGGGATGATGAAAGTTTCGAAGCCGAATGAAATTCCAAT
AGGAGCGCTTCGTCTCTTTCGCGTGAGTCAACAAGGCTGAGTGCGAGCGA
GAGGGGGTAGCGGGCAGGATGCAGCTGCCGAGTCAGGCGGATAGAAACGT
TAATGTTTTGCTGCGACGCAATTTCGGCAACGGCGGAAGAAGAATGTTGT
TTGGTTTTCCCAATTTTCCCCTTTGTTTTCTTGCTTTTACCCCGCACCGC
GCGCGAACACACACACATGTCGACTGATAACT

BS09704.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31535-PA 402 CG31535-RA 1..402 418..17 2010 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 21:01:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4951663..4952068 13..418 2015 99.8 Plus
Blast to na_te.dros performed 2015-02-10 21:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5081..5123 390..347 109 75 Minus

BS09704.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:32 Download gff for BS09704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31535-PA 1..402 17..418 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:19 Download gff for BS09704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31535-PA 1..402 17..418 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:10 Download gff for BS09704.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4951663..4952074 13..428 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:10 Download gff for BS09704.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4951663..4952074 13..428 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:42 Download gff for BS09704.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777385..777796 13..428 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:42 Download gff for BS09704.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777385..777796 13..428 98   Plus

BS09704.5prime Sequence

432 bp (431 high quality bases) assembled on 2006-04-19

> BS09704.5prime
GAAGTTATCAGTCGACATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAA
GCAAGAAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCC
GCCGTTGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCT
GACTCGGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCC
TTGTTGACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCG
GCTTCGAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCA
GTTGAGGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCT
CCTGCCCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACT
GCACAGAAGCATATCTGAAAGCTTTCTAGACC

BS09704.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31535-PA 402 CG31535-RA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 15:58:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4951663..4952068 422..17 2015 99.8 Minus
Blast to na_te.dros performed 2015-02-10 15:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5081..5123 45..88 109 75 Plus

BS09704.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:33 Download gff for BS09704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31535-PA 1..402 17..418 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:20 Download gff for BS09704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31535-PA 1..402 17..418 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:46 Download gff for BS09704.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4951663..4952074 7..422 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:46 Download gff for BS09704.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4951663..4952074 7..422 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 15:00:28 Download gff for BS09704.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777385..777796 7..422 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 15:00:28 Download gff for BS09704.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777385..777796 7..422 98   Minus

BS09704.complete Sequence

434 bp (434 high quality bases) assembled on 2006-03-25

> BS09704.complete
GAAGTTATCAGTCGACATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAA
GCAAGAAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCC
GCCGTTGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCT
GACTCGGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCC
TTGTTGACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCG
GCTTCGAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCA
GTTGAGGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCT
CCTGCCCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACT
GCACAGAAGCATATCTGAAAGCTTTCTAGACCAT

BS09704.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:02:07 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:02:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4951663..4952068 422..17 2015 99.8 Minus
Blast to na_te.dros performed 2014-11-28 00:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5081..5123 45..88 109 75 Plus

BS09704.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:24:46 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:24:46 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:01 Download gff for BS09704.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4951668..4952068 17..417 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:01 Download gff for BS09704.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4951668..4952068 17..417 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:27 Download gff for BS09704.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777390..777790 17..417 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:27 Download gff for BS09704.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777390..777790 17..417 100   Minus

BS09704.pep Sequence

Translation from 16 to 417

> BS09704.pep
MCVCSRAVRGKSKKTKGKIGKTKQHSSSAVAEIASQQNINVSIRLTRQLH
PARYPLSLALSLVDSRERDEALLLEFHSASKLSSSRKLALQCRLQLRNTK
PNVKAVCVGAGSCPPAKFQCTTPRGRATAQKHI*
Sequence BS09704.pep has no blast hits.