Clone Sequence Records
BS09711.3prime Sequence
882 bp (843 high quality bases) assembled on 2006-04-19
> BS09711.3prime
ATGGTCTAGAAAGCTTTTACAAGACCTTCTTGATCTCATCGTACAACACA
AGCACGAAAGCGCCACCAGTTCCTCTGAGAATGTTGGAGAAGGCGCCCTT
GAAGAAGGCACCGGTGCCCTCCTGCTTGGCGATGGTGGCCCAGCAGTGCA
GTGTGTTCTTGTAGATGACCTCGGTGGCCTTGCGACCAGACTGCATCATC
ATGCGACGACGCACGGTATCGAAGGGATAGGACACGATGCCAGCGACGGT
TGTCACAACCTGGGCGATGGCCCAGCTGATGTAGATGGGTGTGTTCTTGG
GGTCGGGCAGCATACCGCGAGCGGTATCGTAGAAGCCGAAGTAGGCGGCA
CGGTAGATGATGATGCCCTGCACGGACACTCCGAAACCACGGTACAATCC
AACGATGCCGTCGCTCTTGAAGATCTTGGTCAAGCAGTTGCCCAGACCGG
TGAATTCACGCTGACCACCCTTGCCAGTATCAGCAGCCAAGCGAGTACGG
GCAAAGTCCAAGGGGTAGACAAAGCACAGAGAGGTAGCACCAGCGGCACC
ACCGGAGGCCAAGTTGCCGGCGAAGTAGCGCCAGAACTGGGTGTTCTTGT
CCACGCCACCCAGGAAGACCTGCTTGTACTTGTCCTTGAAGGCAAAGTTC
AGAGCCTGGGTTGGGAAGTATCTGATGACGTTGGCCAAGTTGCCGCGCCA
GAAGGACGAGAATCCCTGCTCCTTTGGAATGCGGATAAAGCAATCAACCA
TGCCCTTGTACTGCTTGTCGGGGCTGATTTGTTTCGAGATGTGCTGAACC
TGCAGGAGCAGTTTCACACGCTCAATGGGGGCGACGGCAGTCTTGGAGAC
AGCTGCGGAGATGCCTCCGGCAGCGAAATCCT
BS09711.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16944-PA | 900 | sesB-RA | 35..900 | 882..17 | 4330 | 100 | Minus |
| CG16944-PC | 939 | sesB-RC | 74..939 | 882..17 | 4330 | 100 | Minus |
| CG16944-PB | 900 | sesB-RB | 35..900 | 882..17 | 4330 | 100 | Minus |
| CG16944-PD | 939 | sesB-RD | 74..939 | 882..17 | 4330 | 100 | Minus |
| CG1683-PA | 924 | Ant2-RA | 181..308 | 760..633 | 315 | 89.8 | Minus |
| CG1683-PB | 924 | Ant2-RB | 181..308 | 760..633 | 315 | 89.8 | Minus |
| CG1683-PA | 924 | Ant2-RA | 709..755 | 232..186 | 185 | 95.7 | Minus |
| CG1683-PB | 924 | Ant2-RB | 709..755 | 232..186 | 185 | 95.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-RE | 1685 | CG16944-RE | 192..1058 | 882..16 | 4335 | 100 | Minus |
| sesB-RD | 1853 | CG16944-RD | 260..1126 | 882..16 | 4335 | 100 | Minus |
| sesB-RB | 1640 | CG16944-RB | 147..1013 | 882..16 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10781620..10782096 | 16..492 | 2385 | 100 | Plus |
| X | 23542271 | X | 10782378..10782642 | 618..882 | 1325 | 100 | Plus |
| X | 23542271 | X | 10782173..10782302 | 492..621 | 650 | 100 | Plus |
| X | 23542271 | X | 10779285..10779600 | 81..396 | 500 | 77.2 | Plus |
| X | 23542271 | X | 10780210..10780337 | 633..760 | 445 | 89.8 | Plus |
| X | 23542271 | X | 10780001..10780123 | 500..622 | 300 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:35:37 has no hits.
BS09711.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:42 Download gff for
BS09711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-PA | 35..900 | 17..882 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:33 Download gff for
BS09711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16944-PB | 35..900 | 17..882 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:13:15 Download gff for
BS09711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RC | 254..1122 | 11..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:25 Download gff for
BS09711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RB | 147..1015 | 11..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:25 Download gff for
BS09711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10781618..10782095 | 11..491 | 99 | <- | Plus |
| X | 10782173..10782300 | 492..619 | 100 | <- | Plus |
| X | 10782380..10782642 | 620..882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:13:15 Download gff for
BS09711.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10675651..10676128 | 11..491 | 99 | <- | Plus |
| arm_X | 10676206..10676333 | 492..619 | 100 | <- | Plus |
| arm_X | 10676413..10676675 | 620..882 | 100 | | Plus |
BS09711.5prime Sequence
897 bp (790 high quality bases) assembled on 2006-04-19
> BS09711.5prime
GAAGTTATCAGTCGACATGGGCAAGGATTTCGATGCTGTTGGATTCGTCA
AGGATTTCGCTGCCGGAGGCATCTCCGCAGCTGTCTCCAAGACTGCCGTC
GCCCCCATTGAGCGTGTGAAACTGCTCCTGCAGGTTCAGCACATCTCGAA
ACAAATCAGCCCCGACAAGCAGTACAAGGGCATGGTTGATTGCTTTATCC
GCATTCCAAAGGAGCAGGGATTCTCGTCCTTCTGGCGCGGCAACTTGGCC
AACGTCATCAGATACTTCCCAACCCAGGCTCTGAACTTTGCCTTCAAGGA
CAAGTACAAGCAGGTCTTCCTGGGTGGCGTGGACAAGAACACCCAGTTCT
GGCGCTACTTCGCCGGCAACTTGGCCTCCGGTGGTGCCGCTGGTGCTACC
TCTCTGTGCTTTGTCTACCCCTTGGACTTTGCCCGTACTCGCTTGGCTGC
TGATACTGGCAAGGGTGGTCAGCGTGAATTCACCGGTCTGGGCAACTGCT
TGACCAAGATCTTCAAGAGCGACGGCATCGTTGGATTGTACCGTGGTTTC
GGAGTGTCCGTGCAGGGCATCATCATCTACCGTGCCGCCTACTTCGGCTT
CTACGATACCGCTCGCGGTATGCTGCCCGACCCCAAGAACACACCCATCT
ACATCAGCTGGGCCATCGCCCAGGTTGTGACAACCGTCGCTGGCATCGTG
TCCTATCCCTTCGATACCGTGCGTCGTCGCATGATGATGCAGTCTGGTCG
CAAGGCCACCGAGGTCATCTACAAGAACACACTGCACTGCTGGGCCACCA
TCGCCAAGCAGGAGGGCACCGGGTGCTTCTTCAAGGGCGCCTTCTCAACA
TTCTCAGAGGAACTGGTGGCGCTTTCGTGCTTGTGTTGTACGATGAG
BS09711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16944-PA | 900 | sesB-RA | 1..806 | 17..822 | 4030 | 100 | Plus |
| CG16944-PC | 939 | sesB-RC | 40..845 | 17..822 | 4030 | 100 | Plus |
| CG16944-PB | 900 | sesB-RB | 1..806 | 17..822 | 4030 | 100 | Plus |
| CG16944-PD | 939 | sesB-RD | 40..845 | 17..822 | 4030 | 100 | Plus |
| CG1683-PA | 924 | Ant2-RA | 181..308 | 173..300 | 315 | 89.8 | Plus |
| CG1683-PB | 924 | Ant2-RB | 181..308 | 173..300 | 315 | 89.8 | Plus |
| CG16944-PA | 900 | sesB-RA | 831..882 | 846..897 | 260 | 100 | Plus |
| CG16944-PC | 939 | sesB-RC | 870..921 | 846..897 | 260 | 100 | Plus |
| CG16944-PB | 900 | sesB-RB | 831..882 | 846..897 | 260 | 100 | Plus |
| CG16944-PD | 939 | sesB-RD | 870..921 | 846..897 | 260 | 100 | Plus |
| CG1683-PA | 924 | Ant2-RA | 709..755 | 701..747 | 185 | 95.7 | Plus |
| CG1683-PB | 924 | Ant2-RB | 709..755 | 701..747 | 185 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-RE | 1685 | CG16944-RE | 158..1039 | 17..897 | 4340 | 99.7 | Plus |
| sesB-RD | 1853 | CG16944-RD | 226..1107 | 17..897 | 4340 | 99.7 | Plus |
| sesB-RB | 1640 | CG16944-RB | 113..994 | 17..897 | 4340 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10781639..10782096 | 897..441 | 2195 | 99.1 | Minus |
| X | 23542271 | X | 10782378..10782676 | 315..17 | 1495 | 100 | Minus |
| X | 23542271 | X | 10782173..10782302 | 441..312 | 650 | 100 | Minus |
| X | 23542271 | X | 10779296..10779600 | 841..537 | 460 | 76.7 | Minus |
| X | 23542271 | X | 10780210..10780337 | 300..173 | 445 | 89.8 | Minus |
| X | 23542271 | X | 10780001..10780123 | 433..311 | 300 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:27:49 has no hits.
BS09711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:43 Download gff for
BS09711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-PD | 34..921 | 10..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:34 Download gff for
BS09711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16944-PC | 34..921 | 10..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:48:18 Download gff for
BS09711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RC | 214..1101 | 10..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:30 Download gff for
BS09711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RB | 108..994 | 12..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:30 Download gff for
BS09711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10781639..10782095 | 442..897 | 99 | <- | Minus |
| X | 10782173..10782300 | 314..441 | 100 | <- | Minus |
| X | 10782380..10782686 | 5..313 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:48:18 Download gff for
BS09711.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10675672..10676128 | 442..897 | 99 | <- | Minus |
| arm_X | 10676206..10676333 | 314..441 | 100 | <- | Minus |
| arm_X | 10676413..10676719 | 5..313 | 98 | | Minus |
BS09711.complete Sequence
932 bp (932 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636468
> BS09711.complete
GAAGTTATCAGTCGACATGGGCAAGGATTTCGATGCTGTTGGATTCGTCA
AGGATTTCGCTGCCGGAGGCATCTCCGCAGCTGTCTCCAAGACTGCCGTC
GCCCCCATTGAGCGTGTGAAACTGCTCCTGCAGGTTCAGCACATCTCGAA
ACAAATCAGCCCCGACAAGCAGTACAAGGGCATGGTTGATTGCTTTATCC
GCATTCCAAAGGAGCAGGGATTCTCGTCCTTCTGGCGCGGCAACTTGGCC
AACGTCATCAGATACTTCCCAACCCAGGCTCTGAACTTTGCCTTCAAGGA
CAAGTACAAGCAGGTCTTCCTGGGTGGCGTGGACAAGAACACCCAGTTCT
GGCGCTACTTCGCCGGCAACTTGGCCTCCGGTGGTGCCGCTGGTGCTACC
TCTCTGTGCTTTGTCTACCCCTTGGACTTTGCCCGTACTCGCTTGGCTGC
TGATACTGGCAAGGGTGGTCAGCGTGAATTCACCGGTCTGGGCAACTGCT
TGACCAAGATCTTCAAGAGCGACGGCATCGTTGGATTGTACCGTGGTTTC
GGAGTGTCCGTGCAGGGCATCATCATCTACCGTGCCGCCTACTTCGGCTT
CTACGATACCGCTCGCGGTATGCTGCCCGACCCCAAGAACACACCCATCT
ACATCAGCTGGGCCATCGCCCAGGTTGTGACAACCGTCGCTGGCATCGTG
TCCTATCCCTTCGATACCGTGCGTCGTCGCATGATGATGCAGTCTGGTCG
CAAGGCCACCGAGGTCATCTACAAGAACACACTGCACTGCTGGGCCACCA
TCGCCAAGCAGGAGGGCACCGGTGCCTTCTTCAAGGGCGCCTTCTCCAAC
ATTCTCAGAGGAACTGGTGGCGCTTTCGTGCTTGTGTTGTACGATGAGAT
CAAGAAGGTCTTGTAAAAGCTTTCTAGACCAT
BS09711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-RE | 900 | CG16944-PE | 1..900 | 17..916 | 4500 | 100 | Plus |
| sesB-RD | 939 | CG16944-PD | 40..939 | 17..916 | 4500 | 100 | Plus |
| sesB-RB | 900 | CG16944-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-RE | 1685 | CG16944-RE | 158..1058 | 17..917 | 4505 | 100 | Plus |
| sesB-RD | 1853 | CG16944-RD | 226..1126 | 17..917 | 4505 | 100 | Plus |
| sesB-RB | 1640 | CG16944-RB | 113..1013 | 17..917 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10781620..10782096 | 917..441 | 2385 | 100 | Minus |
| X | 23542271 | X | 10782378..10782676 | 315..17 | 1495 | 100 | Minus |
| X | 23542271 | X | 10782173..10782302 | 441..312 | 650 | 100 | Minus |
| X | 23542271 | X | 10779285..10779600 | 852..537 | 500 | 77.2 | Minus |
| X | 23542271 | X | 10780210..10780337 | 300..173 | 445 | 89.8 | Minus |
| X | 23542271 | X | 10780001..10780123 | 433..311 | 300 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:48:25 has no hits.
BS09711.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:31 Download gff for
BS09711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:55 Download gff for
BS09711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RB | 104..1011 | 12..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:22 Download gff for
BS09711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RC | 220..1117 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:31 Download gff for
BS09711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RB | 104..1011 | 12..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:26 Download gff for
BS09711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RB | 113..1010 | 17..914 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:26 Download gff for
BS09711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10782380..10782676 | 17..313 | 100 | | Minus |
| X | 10781623..10782095 | 442..914 | 100 | <- | Minus |
| X | 10782173..10782300 | 314..441 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:22 Download gff for
BS09711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10675656..10676128 | 442..914 | 100 | <- | Minus |
| arm_X | 10676206..10676333 | 314..441 | 100 | <- | Minus |
| arm_X | 10676413..10676709 | 17..313 | 100 | | Minus |
BS09711.pep Sequence
Translation from 16 to 915
> BS09711.pep
MGKDFDAVGFVKDFAAGGISAAVSKTAVAPIERVKLLLQVQHISKQISPD
KQYKGMVDCFIRIPKEQGFSSFWRGNLANVIRYFPTQALNFAFKDKYKQV
FLGGVDKNTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADTGKG
GQREFTGLGNCLTKIFKSDGIVGLYRGFGVSVQGIIIYRAAYFGFYDTAR
GMLPDPKNTPIYISWAIAQVVTTVAGIVSYPFDTVRRRMMMQSGRKATEV
IYKNTLHCWATIAKQEGTGAFFKGAFSNILRGTGGAFVLVLYDEIKKVL*
BS09711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-PE | 299 | CG16944-PE | 1..299 | 1..299 | 1559 | 100 | Plus |
| sesB-PB | 299 | CG16944-PB | 1..299 | 1..299 | 1559 | 100 | Plus |
| sesB-PA | 299 | CG16944-PA | 1..299 | 1..299 | 1559 | 100 | Plus |
| sesB-PD | 312 | CG16944-PD | 14..312 | 1..299 | 1559 | 100 | Plus |
| sesB-PC | 312 | CG16944-PC | 14..312 | 1..299 | 1559 | 100 | Plus |
