Clone BS09716 Report

Search the DGRC for BS09716

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG3831-RA
Protein status:BS09716.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09716.3prime Sequence

894 bp (819 high quality bases) assembled on 2006-04-19

> BS09716.3prime
ATGGTCTAGAAAGCTTTTATATTTTCCCCAGTGCTGTGAGATTTAGGCAC
ATGCCCAGCGTGAGAATCACAATGACCACCACAAGGATGGCGAAGCACAA
GTAGTTTGGCTGGATGGGCATTCGAAAGAGTTTGGCGGACATGTCCAGCG
AGGCGGCGAACAGCAACGTCGAGTTGAGATCTTCCGCTGAGGTATTGTGG
TAAACAAATGGACGAACCCGTATCTGGTGTCCATTAGCTTGAGCATTCTG
GCACACTCGAGTCACCGATGATGCCACGAAAAAGGGCAGCAATCCCAAAA
ATAGCCACAGCATCACGTTCGCAATATTTAGCAGGACGAGCTTCAGGGCG
CAGTAGTGGAAATCAAAGTCCTTAAATAGGTACACCAATCCCGCGAAGGC
GTACGCCAGATTCATTACAATCAGGAAGCACACTGGAATAGACACGTGCT
GATTCAAGCGCTCCAGCAGCTTGCGGAATTCGAGGACTTCCCTCATCCAA
TCGAGCGAGTCGATGGAGTGCATAAGCAGCTTGTGCGACAGCGTTTCCAG
ATGCATCCTTAGCAAATAACACTCGATGTAGTAGTTGCTCAGTATGATAA
TCTCCACCAGATCCTGCAGCAGTATGGTGAACAAGAGACCCACTCGCAGC
CACATCTCCCAGTCGCTTAGGATTTCCGCTAGCCAGGACACCTTGACGAT
CTGGCTGGGCTGCATCATCACCACACAACAGGCGTAGCCGAATAGCAAAA
TCAGCAGGGCCAGTGCAATGGCCAGAAAAAGCCACAGCATTCGGCAGAGC
CTCTTCGGCTTGGCGGACATCAGGAAAACCCTCTCGATGAGGTTTTGCAG
CTGCTCGTGGTCGATCACCTTGCATACCAACACTGCCGACACGA

BS09716.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-PA 1302 CG3831-RA 425..1302 894..17 4365 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-RC 1492 CG3831-RC 558..1435 894..17 4375 99.9 Minus
CG3831-RA 1562 CG3831-RA 628..1505 894..17 4375 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22939044..22939921 17..894 4375 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 12:40:38 has no hits.

BS09716.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:51 Download gff for BS09716.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3831-PA 426..1302 17..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:46 Download gff for BS09716.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3831-PA 426..1302 17..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:46:06 Download gff for BS09716.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 629..1505 17..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:28:46 Download gff for BS09716.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 629..1505 17..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:28:46 Download gff for BS09716.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22939044..22939920 17..893 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:46:06 Download gff for BS09716.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18826567..18827443 17..893 99   Plus

BS09716.5prime Sequence

946 bp (832 high quality bases) assembled on 2006-04-19

> BS09716.5prime
GAAGTTATCAGTCGACATGCATCGACATAATGCGGAGAGTTCTTTTTGTT
TCATCAATCGCATCAACGGGAATACCAATGATGAACTGCAGCAGCCGGGA
GAACATGAGCCCACTTCCGCTCTGCTGGACTACTGTAAACGGAAGTTCCT
CCGTCCATATGTGGCCATCCTGACCCTGGTGGGCCTCAATCCCATCTCCA
CGGACATGACCAGCATCCGTGCCTGCTGCAGCTACGTCCAGGCGCTGATG
GTGCTCTTCGTCCTGCTTGTAGGATACCTCTTGCGGTATATTTGCGGATA
CAGGGGCGATCGCGGCTTCACCAGCTATCGGGATATTAGACCCATAACCA
ATGGTACAGATGGCGGAGCTACGACCCCGAACACCATAGGAGAACTTCTG
TTTGGGTTCATAGTGCCCAGTGGCTTTAACCTCTTGGCCTTCGTGTCGGC
AGTGTTGGTATGCAAGGTGATCGACCACGAGCAGCTGCAAAACCTCATCG
AGAGGGTTTTCCTGATGTCCGCCAAGCCGAAGAGGCTCTGCCGAATGCTG
TGGCTTTTTCTGGCCATTGCACTGGCCCTGCTGATTTTGCTATTCGGCTA
CGCCTGTTGTGTGGTGATGATGCAGCCCAGCCAGATCGTCAAGGTGTCCT
GGCTAGCGGAAATCCTAAGCGACTGGGAGATGTGGCTGCGAGTGGGTCTC
TTGTTCACCATACTGCTGCAGGATCTGGTGGAGATTATCATACTGAGCAA
CTACTACATCGAGTGTTATTTGCTAAGGATGCATCTGGAAACGCTGTCGC
ACAAGCTGCTTATGCACTCCATCGACTCGCTCGATTGGATGAGGGGAGTC
CTCGAATTCCGCAAGCTGCTGGAGCGCTTGAATCAACACGTGTCTATTCC
AGTGTGCTTCCTGATTGTATGAATCTGGCGTACGCCTCGCGGGGAT

BS09716.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-PA 1302 CG3831-RA 1..903 17..919 4440 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-RA 1562 CG3831-RA 203..1132 16..943 4555 99.5 Plus
CG3831-RC 1492 CG3831-RC 209..1062 92..943 4175 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22939424..22940061 937..301 3095 99.4 Minus
2R 25286936 2R 22940367..22940531 308..144 810 99.4 Minus
2R 25286936 2R 22940615..22940744 145..16 650 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:17:18 has no hits.

BS09716.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:52 Download gff for BS09716.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3831-PA 1..931 17..946 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:47 Download gff for BS09716.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3831-PA 1..931 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:42:54 Download gff for BS09716.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 197..1134 11..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:33 Download gff for BS09716.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 197..1134 11..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:33 Download gff for BS09716.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22939415..22940058 304..946 99 <- Minus
2R 22940372..22940529 146..303 100 <- Minus
2R 22940615..22940750 11..145 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:42:54 Download gff for BS09716.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18826938..18827581 304..946 99 <- Minus
arm_2R 18827895..18828052 146..303 100 <- Minus
arm_2R 18828138..18828273 11..145 98   Minus

BS09716.complete Sequence

1334 bp (1334 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636469

> BS09716.complete
GAAGTTATCAGTCGACATGCATCGACATAATGCGGAGAGTTCTTTTTGTT
TCATCAATCGCATCAACGGGAATACCAATGATGAACTGCAGCAGCCGGGA
GAACATGAGCCCACTTCCGCTCTGCTGGACTACTGTAAACGGAAGTTCCT
CCGTCCATATGTGGCCATCCTGACCCTGGTGGGCCTCAATCCCATCTCCA
CGGACATGACCAGCATCCGTGCCTGCTGCAGCTACGTCCAGGCGCTGATG
GTGCTCTTCGTCCTGCTTGTAGGATACCTCTTGCGGTATATTTGCGGATA
CAGGGGCGATCGCGGCTTCACCAGCTATCGGGATATTAGACCCATAACCA
ATGGTACAGATGGCGGAGCTACGACCCCGAACACCATAGGAGAACTTCTG
TTTGGGTTCATAGTGCCCAGTGGCTTTAACCTCTTGGCCTTCGTGTCGGC
AGTGTTGGTATGCAAGGTGATCGACCACGAGCAGCTGCAAAACCTCATCG
AGAGGGTTTTCCTGATGTCCGCCAAGCCGAAGAGGCTCTGCCGAATGCTG
TGGCTTTTTCTGGCCATTGCACTGGCCCTGCTGATTTTGCTATTCGGCTA
CGCCTGTTGTGTGGTGATGATGCAGCCCAGCCAGATCGTCAAGGTGTCCT
GGCTAGCGGAAATCCTAAGCGACTGGGAGATGTGGCTGCGAGTGGGTCTC
TTGTTCACCATACTGCTGCAGGATCTGGTGGAGATTATCATACTGAGCAA
CTACTACATCGAGTGTTATTTGCTAAGGATGCATCTGGAAACGCTGTCGC
ACAAGCTGCTTATGCACTCCATCGACTCGCTCGATTGGATGAGGGAAGTC
CTCGAATTCCGCAAGCTGCTGGAGCGCTTGAATCAGCACGTGTCTATTCC
AGTGTGCTTCCTGATTGTAATGAATCTGGCGTACGCCTTCGCGGGATTGG
TGTACCTATTTAAGGACTTTGATTTCCACTACTGCGCCCTGAAGCTCGTC
CTGCTAAATATTGCGAACGTGATGCTGTGGCTATTTTTGGGATTGCTGCC
CTTTTTCGTGGCATCATCGGTGACTCGAGTGTGCCAGAATGCTCAAGCTA
ATGGACACCAGATACGGGTTCGTCCATTTGTTTACCACAATACCTCAGCG
GAAGATCTCAACTCGACGTTGCTGTTCGCCGCCTCGCTGGACATGTCCGC
CAAACTCTTTCGAATGCCCATCCAGCCAAACTACTTGTGCTTCGCCATCC
TTGTGGTGGTCATTGTGATTCTCACGCTGGGCATGTGCCTAAATCTCACA
GCACTGGGGAAAATATAAAAGCTTTCTAGACCAT

BS09716.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-RA 1302 CG3831-PA 1..1302 17..1318 6495 99.9 Plus
CG3831-RC 1356 CG3831-PC 130..1356 92..1318 6120 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-RA 1562 CG3831-RA 203..1505 16..1318 6500 99.9 Plus
CG3831-RC 1492 CG3831-RC 209..1435 92..1318 6120 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22939044..22940061 1318..301 5075 99.9 Minus
2R 25286936 2R 22940367..22940531 308..144 810 99.4 Minus
2R 25286936 2R 22940615..22940744 145..16 650 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:50:47 has no hits.

BS09716.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:37 Download gff for BS09716.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 1..1302 17..1318 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:38 Download gff for BS09716.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 195..1503 11..1318 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:48 Download gff for BS09716.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 204..1496 17..1309 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:38 Download gff for BS09716.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 195..1503 11..1318 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:29 Download gff for BS09716.complete
Subject Subject Range Query Range Percent Splice Strand
CG3831-RA 204..1496 17..1309 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:29 Download gff for BS09716.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22939053..22940058 304..1309 99 <- Minus
2R 22940372..22940529 146..303 100 <- Minus
2R 22940615..22940743 17..145 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:48 Download gff for BS09716.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18828138..18828266 17..145 100   Minus
arm_2R 18826576..18827581 304..1309 99 <- Minus
arm_2R 18827895..18828052 146..303 100 <- Minus

BS09716.pep Sequence

Translation from 16 to 1317

> BS09716.pep
MHRHNAESSFCFINRINGNTNDELQQPGEHEPTSALLDYCKRKFLRPYVA
ILTLVGLNPISTDMTSIRACCSYVQALMVLFVLLVGYLLRYICGYRGDRG
FTSYRDIRPITNGTDGGATTPNTIGELLFGFIVPSGFNLLAFVSAVLVCK
VIDHEQLQNLIERVFLMSAKPKRLCRMLWLFLAIALALLILLFGYACCVV
MMQPSQIVKVSWLAEILSDWEMWLRVGLLFTILLQDLVEIIILSNYYIEC
YLLRMHLETLSHKLLMHSIDSLDWMREVLEFRKLLERLNQHVSIPVCFLI
VMNLAYAFAGLVYLFKDFDFHYCALKLVLLNIANVMLWLFLGLLPFFVAS
SVTRVCQNAQANGHQIRVRPFVYHNTSAEDLNSTLLFAASLDMSAKLFRM
PIQPNYLCFAILVVVIVILTLGMCLNLTALGKI*

BS09716.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3831-PA 433 CG3831-PA 1..433 1..433 2244 100 Plus
CG3831-PC 451 CG3831-PC 40..451 21..433 2110 99.5 Plus