Clone Sequence Records
BS09716.3prime Sequence
894 bp (819 high quality bases) assembled on 2006-04-19
> BS09716.3prime
ATGGTCTAGAAAGCTTTTATATTTTCCCCAGTGCTGTGAGATTTAGGCAC
ATGCCCAGCGTGAGAATCACAATGACCACCACAAGGATGGCGAAGCACAA
GTAGTTTGGCTGGATGGGCATTCGAAAGAGTTTGGCGGACATGTCCAGCG
AGGCGGCGAACAGCAACGTCGAGTTGAGATCTTCCGCTGAGGTATTGTGG
TAAACAAATGGACGAACCCGTATCTGGTGTCCATTAGCTTGAGCATTCTG
GCACACTCGAGTCACCGATGATGCCACGAAAAAGGGCAGCAATCCCAAAA
ATAGCCACAGCATCACGTTCGCAATATTTAGCAGGACGAGCTTCAGGGCG
CAGTAGTGGAAATCAAAGTCCTTAAATAGGTACACCAATCCCGCGAAGGC
GTACGCCAGATTCATTACAATCAGGAAGCACACTGGAATAGACACGTGCT
GATTCAAGCGCTCCAGCAGCTTGCGGAATTCGAGGACTTCCCTCATCCAA
TCGAGCGAGTCGATGGAGTGCATAAGCAGCTTGTGCGACAGCGTTTCCAG
ATGCATCCTTAGCAAATAACACTCGATGTAGTAGTTGCTCAGTATGATAA
TCTCCACCAGATCCTGCAGCAGTATGGTGAACAAGAGACCCACTCGCAGC
CACATCTCCCAGTCGCTTAGGATTTCCGCTAGCCAGGACACCTTGACGAT
CTGGCTGGGCTGCATCATCACCACACAACAGGCGTAGCCGAATAGCAAAA
TCAGCAGGGCCAGTGCAATGGCCAGAAAAAGCCACAGCATTCGGCAGAGC
CTCTTCGGCTTGGCGGACATCAGGAAAACCCTCTCGATGAGGTTTTGCAG
CTGCTCGTGGTCGATCACCTTGCATACCAACACTGCCGACACGA
BS09716.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3831-PA | 1302 | CG3831-RA | 425..1302 | 894..17 | 4365 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3831-RC | 1492 | CG3831-RC | 558..1435 | 894..17 | 4375 | 99.9 | Minus |
CG3831-RA | 1562 | CG3831-RA | 628..1505 | 894..17 | 4375 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22939044..22939921 | 17..894 | 4375 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:40:38 has no hits.
BS09716.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:51 Download gff for
BS09716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-PA | 426..1302 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:46 Download gff for
BS09716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-PA | 426..1302 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:46:06 Download gff for
BS09716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-RA | 629..1505 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:28:46 Download gff for
BS09716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-RA | 629..1505 | 17..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:28:46 Download gff for
BS09716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22939044..22939920 | 17..893 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:46:06 Download gff for
BS09716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18826567..18827443 | 17..893 | 99 | | Plus |
BS09716.5prime Sequence
946 bp (832 high quality bases) assembled on 2006-04-19
> BS09716.5prime
GAAGTTATCAGTCGACATGCATCGACATAATGCGGAGAGTTCTTTTTGTT
TCATCAATCGCATCAACGGGAATACCAATGATGAACTGCAGCAGCCGGGA
GAACATGAGCCCACTTCCGCTCTGCTGGACTACTGTAAACGGAAGTTCCT
CCGTCCATATGTGGCCATCCTGACCCTGGTGGGCCTCAATCCCATCTCCA
CGGACATGACCAGCATCCGTGCCTGCTGCAGCTACGTCCAGGCGCTGATG
GTGCTCTTCGTCCTGCTTGTAGGATACCTCTTGCGGTATATTTGCGGATA
CAGGGGCGATCGCGGCTTCACCAGCTATCGGGATATTAGACCCATAACCA
ATGGTACAGATGGCGGAGCTACGACCCCGAACACCATAGGAGAACTTCTG
TTTGGGTTCATAGTGCCCAGTGGCTTTAACCTCTTGGCCTTCGTGTCGGC
AGTGTTGGTATGCAAGGTGATCGACCACGAGCAGCTGCAAAACCTCATCG
AGAGGGTTTTCCTGATGTCCGCCAAGCCGAAGAGGCTCTGCCGAATGCTG
TGGCTTTTTCTGGCCATTGCACTGGCCCTGCTGATTTTGCTATTCGGCTA
CGCCTGTTGTGTGGTGATGATGCAGCCCAGCCAGATCGTCAAGGTGTCCT
GGCTAGCGGAAATCCTAAGCGACTGGGAGATGTGGCTGCGAGTGGGTCTC
TTGTTCACCATACTGCTGCAGGATCTGGTGGAGATTATCATACTGAGCAA
CTACTACATCGAGTGTTATTTGCTAAGGATGCATCTGGAAACGCTGTCGC
ACAAGCTGCTTATGCACTCCATCGACTCGCTCGATTGGATGAGGGGAGTC
CTCGAATTCCGCAAGCTGCTGGAGCGCTTGAATCAACACGTGTCTATTCC
AGTGTGCTTCCTGATTGTATGAATCTGGCGTACGCCTCGCGGGGAT
BS09716.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3831-PA | 1302 | CG3831-RA | 1..903 | 17..919 | 4440 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3831-RA | 1562 | CG3831-RA | 203..1132 | 16..943 | 4555 | 99.5 | Plus |
CG3831-RC | 1492 | CG3831-RC | 209..1062 | 92..943 | 4175 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22939424..22940061 | 937..301 | 3095 | 99.4 | Minus |
2R | 25286936 | 2R | 22940367..22940531 | 308..144 | 810 | 99.4 | Minus |
2R | 25286936 | 2R | 22940615..22940744 | 145..16 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:17:18 has no hits.
BS09716.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:17:52 Download gff for
BS09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-PA | 1..931 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:30:47 Download gff for
BS09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-PA | 1..931 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:42:54 Download gff for
BS09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-RA | 197..1134 | 11..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:33 Download gff for
BS09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-RA | 197..1134 | 11..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:33 Download gff for
BS09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22939415..22940058 | 304..946 | 99 | <- | Minus |
2R | 22940372..22940529 | 146..303 | 100 | <- | Minus |
2R | 22940615..22940750 | 11..145 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:42:54 Download gff for
BS09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18826938..18827581 | 304..946 | 99 | <- | Minus |
arm_2R | 18827895..18828052 | 146..303 | 100 | <- | Minus |
arm_2R | 18828138..18828273 | 11..145 | 98 | | Minus |
BS09716.complete Sequence
1334 bp (1334 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636469
> BS09716.complete
GAAGTTATCAGTCGACATGCATCGACATAATGCGGAGAGTTCTTTTTGTT
TCATCAATCGCATCAACGGGAATACCAATGATGAACTGCAGCAGCCGGGA
GAACATGAGCCCACTTCCGCTCTGCTGGACTACTGTAAACGGAAGTTCCT
CCGTCCATATGTGGCCATCCTGACCCTGGTGGGCCTCAATCCCATCTCCA
CGGACATGACCAGCATCCGTGCCTGCTGCAGCTACGTCCAGGCGCTGATG
GTGCTCTTCGTCCTGCTTGTAGGATACCTCTTGCGGTATATTTGCGGATA
CAGGGGCGATCGCGGCTTCACCAGCTATCGGGATATTAGACCCATAACCA
ATGGTACAGATGGCGGAGCTACGACCCCGAACACCATAGGAGAACTTCTG
TTTGGGTTCATAGTGCCCAGTGGCTTTAACCTCTTGGCCTTCGTGTCGGC
AGTGTTGGTATGCAAGGTGATCGACCACGAGCAGCTGCAAAACCTCATCG
AGAGGGTTTTCCTGATGTCCGCCAAGCCGAAGAGGCTCTGCCGAATGCTG
TGGCTTTTTCTGGCCATTGCACTGGCCCTGCTGATTTTGCTATTCGGCTA
CGCCTGTTGTGTGGTGATGATGCAGCCCAGCCAGATCGTCAAGGTGTCCT
GGCTAGCGGAAATCCTAAGCGACTGGGAGATGTGGCTGCGAGTGGGTCTC
TTGTTCACCATACTGCTGCAGGATCTGGTGGAGATTATCATACTGAGCAA
CTACTACATCGAGTGTTATTTGCTAAGGATGCATCTGGAAACGCTGTCGC
ACAAGCTGCTTATGCACTCCATCGACTCGCTCGATTGGATGAGGGAAGTC
CTCGAATTCCGCAAGCTGCTGGAGCGCTTGAATCAGCACGTGTCTATTCC
AGTGTGCTTCCTGATTGTAATGAATCTGGCGTACGCCTTCGCGGGATTGG
TGTACCTATTTAAGGACTTTGATTTCCACTACTGCGCCCTGAAGCTCGTC
CTGCTAAATATTGCGAACGTGATGCTGTGGCTATTTTTGGGATTGCTGCC
CTTTTTCGTGGCATCATCGGTGACTCGAGTGTGCCAGAATGCTCAAGCTA
ATGGACACCAGATACGGGTTCGTCCATTTGTTTACCACAATACCTCAGCG
GAAGATCTCAACTCGACGTTGCTGTTCGCCGCCTCGCTGGACATGTCCGC
CAAACTCTTTCGAATGCCCATCCAGCCAAACTACTTGTGCTTCGCCATCC
TTGTGGTGGTCATTGTGATTCTCACGCTGGGCATGTGCCTAAATCTCACA
GCACTGGGGAAAATATAAAAGCTTTCTAGACCAT
BS09716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3831-RA | 1302 | CG3831-PA | 1..1302 | 17..1318 | 6495 | 99.9 | Plus |
CG3831-RC | 1356 | CG3831-PC | 130..1356 | 92..1318 | 6120 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3831-RA | 1562 | CG3831-RA | 203..1505 | 16..1318 | 6500 | 99.9 | Plus |
CG3831-RC | 1492 | CG3831-RC | 209..1435 | 92..1318 | 6120 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22939044..22940061 | 1318..301 | 5075 | 99.9 | Minus |
2R | 25286936 | 2R | 22940367..22940531 | 308..144 | 810 | 99.4 | Minus |
2R | 25286936 | 2R | 22940615..22940744 | 145..16 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:50:47 has no hits.
BS09716.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:37 Download gff for
BS09716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-RA | 1..1302 | 17..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:38 Download gff for
BS09716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-RA | 195..1503 | 11..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:48 Download gff for
BS09716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-RA | 204..1496 | 17..1309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:38 Download gff for
BS09716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-RA | 195..1503 | 11..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:29 Download gff for
BS09716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3831-RA | 204..1496 | 17..1309 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:29 Download gff for
BS09716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22939053..22940058 | 304..1309 | 99 | <- | Minus |
2R | 22940372..22940529 | 146..303 | 100 | <- | Minus |
2R | 22940615..22940743 | 17..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:48 Download gff for
BS09716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18828138..18828266 | 17..145 | 100 | | Minus |
arm_2R | 18826576..18827581 | 304..1309 | 99 | <- | Minus |
arm_2R | 18827895..18828052 | 146..303 | 100 | <- | Minus |
BS09716.pep Sequence
Translation from 16 to 1317
> BS09716.pep
MHRHNAESSFCFINRINGNTNDELQQPGEHEPTSALLDYCKRKFLRPYVA
ILTLVGLNPISTDMTSIRACCSYVQALMVLFVLLVGYLLRYICGYRGDRG
FTSYRDIRPITNGTDGGATTPNTIGELLFGFIVPSGFNLLAFVSAVLVCK
VIDHEQLQNLIERVFLMSAKPKRLCRMLWLFLAIALALLILLFGYACCVV
MMQPSQIVKVSWLAEILSDWEMWLRVGLLFTILLQDLVEIIILSNYYIEC
YLLRMHLETLSHKLLMHSIDSLDWMREVLEFRKLLERLNQHVSIPVCFLI
VMNLAYAFAGLVYLFKDFDFHYCALKLVLLNIANVMLWLFLGLLPFFVAS
SVTRVCQNAQANGHQIRVRPFVYHNTSAEDLNSTLLFAASLDMSAKLFRM
PIQPNYLCFAILVVVIVILTLGMCLNLTALGKI*
BS09716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3831-PA | 433 | CG3831-PA | 1..433 | 1..433 | 2244 | 100 | Plus |
CG3831-PC | 451 | CG3831-PC | 40..451 | 21..433 | 2110 | 99.5 | Plus |