Clone Sequence Records
BS09723.3prime Sequence
954 bp (765 high quality bases) assembled on 2006-04-19
> BS09723.3prime
ATGGTCTAGAAAGCTTTTAGAACTGAAACGGCGGCGTATCTCGGCAGGTG
TGGGAGCCCATCGGCGTGATGACCACGTGCAGGGTAAGCGTGTTGCGAGC
GGTGCCCGTCAGATGGGGACTCAAGTACAGTGATGTGTGCTCCAGCTCCT
CGTACGGCAGCAGGTTGTCCAGGTTGACGACGCGCGACGTATCGGAGAAG
TACTCCGTACGCTCTACAACTGTGCGGATGTGCATAATCTGGTTTTGCAT
GCCAACGATCAGCACGGCGATCTTAAATCGCTCCTCTCCGATGTTTTGAT
GCTTGCAGGTAACCCGTAGACGCACTGTGTTCAAAGAGCAGCCTGGTACG
TCCTCGCCCCATACCATTTTGGCCTTGTTATACCTAACGCCTCGCGGGAA
AAACTCGATTTCCCATGTCATGCAGGGATCGTCCTCCTCAGTCTCGGCAA
TGTGTCGCTGCGAAAAGAAGCAGGTCACATAGTTCTTATAATCCTCGATC
GCGGTAAAGTTGTGCACATCGATGTCGACGCTCCAGGTGTCGTTCCAATA
TAGCCGCGGCGTAAACTGCAGCTTACCCGATTCGGTGGCTCGCACCTCTC
GCACCCGATCCTCATGGCCCGATTGATAGCTCATGCCGATGGCAATGCGC
TCGACGAGGAACTCTTTGTGATACTCGACCAGCGGATCCATTAGCAGGTG
TGAGAGCTGGCGCGGCGTCATCATGCCGAAGCGTATGTGGGACACAGTCT
GTTCGATCAGTTCCATGAAACCGCCACTGCCAGTGGCCTCCATCTGTTCG
CGACGATGCAGCAGCCACGTCTGCAGGATGTCAAACAATTTGTACTCGCT
GGTGACAACCAGATCGTTCTGCTGCAACAGCAGTATCAGTATGGCCGGGT
CCATTTCACAAAGTCCCGCGACTCGGCAACCATCTCGAGGTTCCATTTGA
AAAA
BS09723.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1841-PB | 1764 | CG1841-RB | 873..1764 | 908..17 | 4460 | 100 | Minus |
CG1841-PA | 1764 | CG1841-RA | 873..1764 | 908..17 | 4460 | 100 | Minus |
CG1841-PB | 1764 | CG1841-RB | 830..872 | 950..908 | 215 | 100 | Minus |
CG1841-PA | 1764 | CG1841-RA | 830..872 | 950..908 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango10-RC | 3196 | CG1841-RC | 1192..2132 | 954..15 | 4665 | 99.8 | Minus |
Tango10-RA | 3008 | CG1841-RA | 1004..1944 | 954..15 | 4665 | 99.8 | Minus |
Tango10-RB | 3247 | CG1841-RB | 1243..2183 | 954..15 | 4665 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11721658..11722183 | 954..430 | 2565 | 99.6 | Minus |
X | 23542271 | X | 11722528..11722790 | 277..15 | 1300 | 99.6 | Minus |
X | 23542271 | X | 11722250..11722408 | 430..272 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:16:10 has no hits.
BS09723.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:05 Download gff for
BS09723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1841-PA | 831..1764 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:02 Download gff for
BS09723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1841-PA | 831..1764 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:34:22 Download gff for
BS09723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango10-RB | 1248..2183 | 15..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:21 Download gff for
BS09723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango10-RB | 1248..2183 | 15..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:21 Download gff for
BS09723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11721663..11722183 | 430..949 | 99 | -> | Minus |
X | 11722251..11722408 | 272..429 | 100 | -> | Minus |
X | 11722534..11722790 | 15..271 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:34:22 Download gff for
BS09723.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11615696..11616216 | 430..949 | 99 | -> | Minus |
arm_X | 11616284..11616441 | 272..429 | 100 | -> | Minus |
arm_X | 11616567..11616823 | 15..271 | 100 | | Minus |
BS09723.5prime Sequence
934 bp (810 high quality bases) assembled on 2006-04-19
> BS09723.5prime
GAAGTTATCAGTCGACATGAACGACAACGGTAACGGCGGAGCAGCGCCAG
TCTCCGGTGGAGTGTGCGGTGTTGGTGGTGCGCACGGAGCGGCTGGTGGC
GCTGATGGTGCTGGTGGTGCTGGCGGTGGCGGCGGATGCGGGGCTGGCGG
TGGAGGTGCTGGTGCAGGTCCGGGCGGGGGTCCCGGGGGCGGAGCAGCTG
CTGCGGACCTGGCTGGCGAGGCAGCTGGAGGAGCAGCAGGTGGTGATGCA
GCCATTAATAACCAAGCTAATGCCAATGGAACCAGCGAGAGCCCAGCGAA
AGGACTTAATTCTAGCGAGGATCTGGACGCCAAGCGGCGCAAGTGTCGCG
AAACGGAAGAAGGCCAGGATGAAGCCAGCACGATGATCGATGCGAATAGT
GTGCTCAATAAGATCGCCAACCTGTACGCCGAACAGCTGATGTCGGACAT
AGTGCTACTGGTGGACGGCAAGGAGTTTCCCGCCCACCGCGTCATCCTCT
GTGCCAGCAGCGACGTCTTTCAGGTGATGCTAATGAATCCGGAGTGGAAC
GAGTGCAGCAAGCACGTGATCGAATTGCACGAGGAAGCCTGCTGTTCGGC
GGTGTTTCCGCAGTTCATCAAGTACCTATACGTTGGCCAAATCGAGGTCA
CGCTGCAGACGGTGATGCCAATGCTGGCGCTGAGCGACAAGTACAATATA
CGCGACCTGATCGATCTCTGCGTGGACTACATGAACAAGCACGTGGCCAA
GGCGGCCACCAGCGGTTATCTTGTGTCCTGGCTGCAATATACGCTCTCCT
TCACGCCCACCCACAACGATCTCACCGAAACACTCAAGCGGTTTCTCAAA
TGGAACCTCGAGATGGTTGCCGAGTCGCGGGACTTTGTTGAATGGACCCG
GGCATACTGATACTGCTGTTGCAGCAAAACGATC
BS09723.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1841-PB | 1764 | CG1841-RB | 1..876 | 17..892 | 4380 | 100 | Plus |
CG1841-PA | 1764 | CG1841-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
CG1841-PB | 1764 | CG1841-RB | 876..919 | 891..934 | 170 | 95.4 | Plus |
CG1841-PA | 1764 | CG1841-RA | 876..919 | 891..934 | 170 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango10-RC | 3196 | CG1841-RC | 367..1285 | 17..934 | 4540 | 99.7 | Plus |
Tango10-RA | 3008 | CG1841-RA | 179..1097 | 17..934 | 4540 | 99.7 | Plus |
Tango10-RB | 3247 | CG1841-RB | 418..1336 | 17..934 | 4540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11721198..11721751 | 382..934 | 2690 | 99.5 | Plus |
X | 23542271 | X | 11720662..11721027 | 17..382 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:30:01 has no hits.
BS09723.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:06 Download gff for
BS09723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1841-PA | 1..919 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:03 Download gff for
BS09723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1841-PA | 1..919 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:21:43 Download gff for
BS09723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango10-RB | 416..1336 | 13..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:53:16 Download gff for
BS09723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango10-RB | 416..1336 | 13..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:53:16 Download gff for
BS09723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11720660..11721027 | 13..382 | 99 | -> | Plus |
X | 11721199..11721751 | 383..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:21:43 Download gff for
BS09723.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11614693..11615060 | 13..382 | 99 | -> | Plus |
arm_X | 11615232..11615784 | 383..934 | 99 | | Plus |
BS09723.complete Sequence
1796 bp assembled on 2009-08-26
GenBank Submission: KX801030
> BS09723.complete
GAAGTTATCAGTCGACATGAACGACAACGGTAACGGCGGAGCAGCGCCAG
TCTCCGGTGGAGTGTGCGGTGTTGGTGGTGCGCACGGAGCGGCTGGTGGC
GCTGATGGTGCTGGTGGTGCTGGCGGTGGCGGCGGATGCGGGGCTGGCGG
TGGAGGTGCTGGTGCAGGTCCGGGCGGGGGTCCCGGGGGCGGAGCAGCTG
CTGCGGACCTGGCTGGCGAGGCAGCTGGAGGAGCAGCAGGTGGTGATGCA
GCCATTAATAACCAAGCTAATGCCAATGGAACCAGCGAGAGCCCAGCGAA
AGGACTTAATTCTAGCGAGGATCTGGACGCCAAGCGGCGCAAGTGTCGCG
AAACGGAAGAAGGCCAGGATGAAGCCAGCACGATGATCGATGCGAATAGT
GTGCTCAATAAGATCGCCAACCTGTACGCCGAACAGCTGATGTCGGACAT
AGTGCTACTGGTGGACGGCAAGGAGTTTCCCGCCCACCGCGTCATCCTCT
GTGCCAGCAGCGACGTCTTTCAGGTGATGCTAATGAATCCGGAGTGGAAC
GAGTGCAGCAAGCACGTGATCGAATTGCACGAGGAAGCCTGCTGTTCGGC
GGTGTTTCCGCAGTTCATCAAGTACCTATACGTTGGCCAAATCGAGGTCA
CGCTGCAGACGGTGATGCCAATGCTGGCGCTGAGCGACAAGTACAATATA
CGCGACCTGATCGATCTCTGCGTGGACTACATGAACAAGCACGTGGCCAA
GGCGGCCACCAGCGGTTATCTTGTGTCCTGGCTGCAATATACGCTCTCCT
TCACGCCCACCCACAACGATCTCACCGAAACACTCAAGCGGTTTCTCAAA
TGGAACCTCGAGATGGTTGCCGAGTCGCGGGACTTTGTTGAAATGGACCC
GGCCATACTGATACTGCTGTTGCAGCAGAACGATCTGGTTGTCACCAGCG
AGTACAAATTGTTTGACATCCTGCAGACGTGGCTGCTGCATCGTCGCGAA
CAGATGGAGGCCACTGGCAGTGGCGGTTTCATGGAACTGATCGAACAGAC
TGTGTCCCACATACGCTTCGGCATGATGACGCCGCGCCAGCTCTCACACC
TGCTAATGGATCCGCTGGTCGAGTATCACAAAGAGTTCCTCGTCGAGCGC
ATTGCCATCGGCATGAGCTATCAATCGGGCCATGAGGATCGGGTGCGAGA
GGTGCGAGCCACCGAATCGGGTAAGCTGCAGTTTACGCCGCGGCTATATT
GGAACGACACCTGGAGCGTCGACATCGATGTGCACAACTTTACCGCGATC
GAGGATTATAAGAACTATGTGACCTGCTTCTTTTCGCAGCGACACATTGC
CGAGACTGAGGAGGACGATCCCTGCATGACATGGGAAATCGAGTTTTTCC
CGCGAGGCGTTAGGTATAACAAGGCCAAAATGGTATGGGGCGAGGACGTA
CCAGGCTGCTCTTTGAACACAGTGCGTCTACGGGTTACCTGCAAGCATCA
AAACATCGGAGAGGAGCGATTTAAGATCGCCGTGCTGATCGTTGGCATGC
AAAACCAGATTATGCACATCCGCACAGTTGTAGAGCGTACGGAGTACTTC
TCCGATACGTCGCGCGTCGTCAACCTGGACAACCTGCTGCCGTACGAGGA
GCTGGAGCACACATCACTGTACTTGAGTCCCCATCTGACGGGCACCGCTC
GCAACACGCTTACCCTGCACGTGGTCATCACGCCGATGGGCTCCCACACC
TGCCGAGATACGCCGCCGTTTCAGTTCTAAAAGCTTTCTAGACCAT
BS09723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango10-RC | 1764 | CG1841-PC | 1..1764 | 17..1780 | 8820 | 100 | Plus |
Tango10-RA | 1764 | CG1841-PA | 1..1764 | 17..1780 | 8820 | 100 | Plus |
Tango10-RB | 1764 | CG1841-PB | 1..1764 | 17..1780 | 8820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango10-RC | 3196 | CG1841-RC | 367..2132 | 17..1782 | 8830 | 100 | Plus |
Tango10-RA | 3008 | CG1841-RA | 179..1944 | 17..1782 | 8830 | 100 | Plus |
Tango10-RB | 3247 | CG1841-RB | 418..2183 | 17..1782 | 8830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11721198..11722183 | 382..1367 | 4930 | 100 | Plus |
X | 23542271 | X | 11720662..11721027 | 17..382 | 1830 | 100 | Plus |
X | 23542271 | X | 11722528..11722790 | 1520..1782 | 1300 | 99.6 | Plus |
X | 23542271 | X | 11722250..11722408 | 1367..1525 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:34:20 has no hits.
BS09723.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:16 Download gff for
BS09723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango10-RA | 179..1940 | 17..1778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:25 Download gff for
BS09723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango10-RB | 418..2179 | 17..1778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:43 Download gff for
BS09723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango10-RB | 418..2179 | 17..1778 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:43 Download gff for
BS09723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11720662..11721027 | 17..382 | 100 | -> | Plus |
X | 11721199..11722183 | 383..1367 | 100 | -> | Plus |
X | 11722251..11722408 | 1368..1525 | 100 | -> | Plus |
X | 11722534..11722786 | 1526..1778 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:25 Download gff for
BS09723.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11614695..11615060 | 17..382 | 100 | -> | Plus |
arm_X | 11615232..11616216 | 383..1367 | 100 | -> | Plus |
arm_X | 11616284..11616441 | 1368..1525 | 100 | -> | Plus |
arm_X | 11616567..11616819 | 1526..1778 | 100 | | Plus |
BS09723.pep Sequence
Translation from 16 to 1779
> BS09723.pep
MNDNGNGGAAPVSGGVCGVGGAHGAAGGADGAGGAGGGGGCGAGGGGAGA
GPGGGPGGGAAAADLAGEAAGGAAGGDAAINNQANANGTSESPAKGLNSS
EDLDAKRRKCRETEEGQDEASTMIDANSVLNKIANLYAEQLMSDIVLLVD
GKEFPAHRVILCASSDVFQVMLMNPEWNECSKHVIELHEEACCSAVFPQF
IKYLYVGQIEVTLQTVMPMLALSDKYNIRDLIDLCVDYMNKHVAKAATSG
YLVSWLQYTLSFTPTHNDLTETLKRFLKWNLEMVAESRDFVEMDPAILIL
LLQQNDLVVTSEYKLFDILQTWLLHRREQMEATGSGGFMELIEQTVSHIR
FGMMTPRQLSHLLMDPLVEYHKEFLVERIAIGMSYQSGHEDRVREVRATE
SGKLQFTPRLYWNDTWSVDIDVHNFTAIEDYKNYVTCFFSQRHIAETEED
DPCMTWEIEFFPRGVRYNKAKMVWGEDVPGCSLNTVRLRVTCKHQNIGEE
RFKIAVLIVGMQNQIMHIRTVVERTEYFSDTSRVVNLDNLLPYEELEHTS
LYLSPHLTGTARNTLTLHVVITPMGSHTCRDTPPFQF*
BS09723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango10-PC | 587 | CG1841-PC | 1..587 | 1..587 | 3104 | 100 | Plus |
Tango10-PA | 587 | CG1841-PA | 1..587 | 1..587 | 3104 | 100 | Plus |
Tango10-PB | 587 | CG1841-PB | 1..587 | 1..587 | 3104 | 100 | Plus |
lute-PA | 677 | CG5319-PA | 76..395 | 5..330 | 184 | 23.7 | Plus |
lute-PC | 727 | CG43226-PC | 126..445 | 5..330 | 184 | 23.7 | Plus |