Clone BS09723 Report

Search the DGRC for BS09723

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptTango10-RA
Protein status:BS09723.pep: full length peptide match
Sequenced Size:1796

Clone Sequence Records

BS09723.3prime Sequence

954 bp (765 high quality bases) assembled on 2006-04-19

> BS09723.3prime
ATGGTCTAGAAAGCTTTTAGAACTGAAACGGCGGCGTATCTCGGCAGGTG
TGGGAGCCCATCGGCGTGATGACCACGTGCAGGGTAAGCGTGTTGCGAGC
GGTGCCCGTCAGATGGGGACTCAAGTACAGTGATGTGTGCTCCAGCTCCT
CGTACGGCAGCAGGTTGTCCAGGTTGACGACGCGCGACGTATCGGAGAAG
TACTCCGTACGCTCTACAACTGTGCGGATGTGCATAATCTGGTTTTGCAT
GCCAACGATCAGCACGGCGATCTTAAATCGCTCCTCTCCGATGTTTTGAT
GCTTGCAGGTAACCCGTAGACGCACTGTGTTCAAAGAGCAGCCTGGTACG
TCCTCGCCCCATACCATTTTGGCCTTGTTATACCTAACGCCTCGCGGGAA
AAACTCGATTTCCCATGTCATGCAGGGATCGTCCTCCTCAGTCTCGGCAA
TGTGTCGCTGCGAAAAGAAGCAGGTCACATAGTTCTTATAATCCTCGATC
GCGGTAAAGTTGTGCACATCGATGTCGACGCTCCAGGTGTCGTTCCAATA
TAGCCGCGGCGTAAACTGCAGCTTACCCGATTCGGTGGCTCGCACCTCTC
GCACCCGATCCTCATGGCCCGATTGATAGCTCATGCCGATGGCAATGCGC
TCGACGAGGAACTCTTTGTGATACTCGACCAGCGGATCCATTAGCAGGTG
TGAGAGCTGGCGCGGCGTCATCATGCCGAAGCGTATGTGGGACACAGTCT
GTTCGATCAGTTCCATGAAACCGCCACTGCCAGTGGCCTCCATCTGTTCG
CGACGATGCAGCAGCCACGTCTGCAGGATGTCAAACAATTTGTACTCGCT
GGTGACAACCAGATCGTTCTGCTGCAACAGCAGTATCAGTATGGCCGGGT
CCATTTCACAAAGTCCCGCGACTCGGCAACCATCTCGAGGTTCCATTTGA
AAAA

BS09723.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1841-PB 1764 CG1841-RB 873..1764 908..17 4460 100 Minus
CG1841-PA 1764 CG1841-RA 873..1764 908..17 4460 100 Minus
CG1841-PB 1764 CG1841-RB 830..872 950..908 215 100 Minus
CG1841-PA 1764 CG1841-RA 830..872 950..908 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Tango10-RC 3196 CG1841-RC 1192..2132 954..15 4665 99.8 Minus
Tango10-RA 3008 CG1841-RA 1004..1944 954..15 4665 99.8 Minus
Tango10-RB 3247 CG1841-RB 1243..2183 954..15 4665 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11721658..11722183 954..430 2565 99.6 Minus
X 23542271 X 11722528..11722790 277..15 1300 99.6 Minus
X 23542271 X 11722250..11722408 430..272 795 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:16:10 has no hits.

BS09723.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:05 Download gff for BS09723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1841-PA 831..1764 17..949 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:02 Download gff for BS09723.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1841-PA 831..1764 17..949 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:34:22 Download gff for BS09723.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango10-RB 1248..2183 15..949 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:21 Download gff for BS09723.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango10-RB 1248..2183 15..949 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:21 Download gff for BS09723.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11721663..11722183 430..949 99 -> Minus
X 11722251..11722408 272..429 100 -> Minus
X 11722534..11722790 15..271 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:34:22 Download gff for BS09723.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11615696..11616216 430..949 99 -> Minus
arm_X 11616284..11616441 272..429 100 -> Minus
arm_X 11616567..11616823 15..271 100   Minus

BS09723.5prime Sequence

934 bp (810 high quality bases) assembled on 2006-04-19

> BS09723.5prime
GAAGTTATCAGTCGACATGAACGACAACGGTAACGGCGGAGCAGCGCCAG
TCTCCGGTGGAGTGTGCGGTGTTGGTGGTGCGCACGGAGCGGCTGGTGGC
GCTGATGGTGCTGGTGGTGCTGGCGGTGGCGGCGGATGCGGGGCTGGCGG
TGGAGGTGCTGGTGCAGGTCCGGGCGGGGGTCCCGGGGGCGGAGCAGCTG
CTGCGGACCTGGCTGGCGAGGCAGCTGGAGGAGCAGCAGGTGGTGATGCA
GCCATTAATAACCAAGCTAATGCCAATGGAACCAGCGAGAGCCCAGCGAA
AGGACTTAATTCTAGCGAGGATCTGGACGCCAAGCGGCGCAAGTGTCGCG
AAACGGAAGAAGGCCAGGATGAAGCCAGCACGATGATCGATGCGAATAGT
GTGCTCAATAAGATCGCCAACCTGTACGCCGAACAGCTGATGTCGGACAT
AGTGCTACTGGTGGACGGCAAGGAGTTTCCCGCCCACCGCGTCATCCTCT
GTGCCAGCAGCGACGTCTTTCAGGTGATGCTAATGAATCCGGAGTGGAAC
GAGTGCAGCAAGCACGTGATCGAATTGCACGAGGAAGCCTGCTGTTCGGC
GGTGTTTCCGCAGTTCATCAAGTACCTATACGTTGGCCAAATCGAGGTCA
CGCTGCAGACGGTGATGCCAATGCTGGCGCTGAGCGACAAGTACAATATA
CGCGACCTGATCGATCTCTGCGTGGACTACATGAACAAGCACGTGGCCAA
GGCGGCCACCAGCGGTTATCTTGTGTCCTGGCTGCAATATACGCTCTCCT
TCACGCCCACCCACAACGATCTCACCGAAACACTCAAGCGGTTTCTCAAA
TGGAACCTCGAGATGGTTGCCGAGTCGCGGGACTTTGTTGAATGGACCCG
GGCATACTGATACTGCTGTTGCAGCAAAACGATC

BS09723.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1841-PB 1764 CG1841-RB 1..876 17..892 4380 100 Plus
CG1841-PA 1764 CG1841-RA 1..876 17..892 4380 100 Plus
CG1841-PB 1764 CG1841-RB 876..919 891..934 170 95.4 Plus
CG1841-PA 1764 CG1841-RA 876..919 891..934 170 95.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tango10-RC 3196 CG1841-RC 367..1285 17..934 4540 99.7 Plus
Tango10-RA 3008 CG1841-RA 179..1097 17..934 4540 99.7 Plus
Tango10-RB 3247 CG1841-RB 418..1336 17..934 4540 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11721198..11721751 382..934 2690 99.5 Plus
X 23542271 X 11720662..11721027 17..382 1830 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:30:01 has no hits.

BS09723.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:06 Download gff for BS09723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1841-PA 1..919 17..934 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:03 Download gff for BS09723.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1841-PA 1..919 17..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:21:43 Download gff for BS09723.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango10-RB 416..1336 13..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:53:16 Download gff for BS09723.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango10-RB 416..1336 13..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:53:16 Download gff for BS09723.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11720660..11721027 13..382 99 -> Plus
X 11721199..11721751 383..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:21:43 Download gff for BS09723.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11614693..11615060 13..382 99 -> Plus
arm_X 11615232..11615784 383..934 99   Plus

BS09723.complete Sequence

1796 bp assembled on 2009-08-26

GenBank Submission: KX801030

> BS09723.complete
GAAGTTATCAGTCGACATGAACGACAACGGTAACGGCGGAGCAGCGCCAG
TCTCCGGTGGAGTGTGCGGTGTTGGTGGTGCGCACGGAGCGGCTGGTGGC
GCTGATGGTGCTGGTGGTGCTGGCGGTGGCGGCGGATGCGGGGCTGGCGG
TGGAGGTGCTGGTGCAGGTCCGGGCGGGGGTCCCGGGGGCGGAGCAGCTG
CTGCGGACCTGGCTGGCGAGGCAGCTGGAGGAGCAGCAGGTGGTGATGCA
GCCATTAATAACCAAGCTAATGCCAATGGAACCAGCGAGAGCCCAGCGAA
AGGACTTAATTCTAGCGAGGATCTGGACGCCAAGCGGCGCAAGTGTCGCG
AAACGGAAGAAGGCCAGGATGAAGCCAGCACGATGATCGATGCGAATAGT
GTGCTCAATAAGATCGCCAACCTGTACGCCGAACAGCTGATGTCGGACAT
AGTGCTACTGGTGGACGGCAAGGAGTTTCCCGCCCACCGCGTCATCCTCT
GTGCCAGCAGCGACGTCTTTCAGGTGATGCTAATGAATCCGGAGTGGAAC
GAGTGCAGCAAGCACGTGATCGAATTGCACGAGGAAGCCTGCTGTTCGGC
GGTGTTTCCGCAGTTCATCAAGTACCTATACGTTGGCCAAATCGAGGTCA
CGCTGCAGACGGTGATGCCAATGCTGGCGCTGAGCGACAAGTACAATATA
CGCGACCTGATCGATCTCTGCGTGGACTACATGAACAAGCACGTGGCCAA
GGCGGCCACCAGCGGTTATCTTGTGTCCTGGCTGCAATATACGCTCTCCT
TCACGCCCACCCACAACGATCTCACCGAAACACTCAAGCGGTTTCTCAAA
TGGAACCTCGAGATGGTTGCCGAGTCGCGGGACTTTGTTGAAATGGACCC
GGCCATACTGATACTGCTGTTGCAGCAGAACGATCTGGTTGTCACCAGCG
AGTACAAATTGTTTGACATCCTGCAGACGTGGCTGCTGCATCGTCGCGAA
CAGATGGAGGCCACTGGCAGTGGCGGTTTCATGGAACTGATCGAACAGAC
TGTGTCCCACATACGCTTCGGCATGATGACGCCGCGCCAGCTCTCACACC
TGCTAATGGATCCGCTGGTCGAGTATCACAAAGAGTTCCTCGTCGAGCGC
ATTGCCATCGGCATGAGCTATCAATCGGGCCATGAGGATCGGGTGCGAGA
GGTGCGAGCCACCGAATCGGGTAAGCTGCAGTTTACGCCGCGGCTATATT
GGAACGACACCTGGAGCGTCGACATCGATGTGCACAACTTTACCGCGATC
GAGGATTATAAGAACTATGTGACCTGCTTCTTTTCGCAGCGACACATTGC
CGAGACTGAGGAGGACGATCCCTGCATGACATGGGAAATCGAGTTTTTCC
CGCGAGGCGTTAGGTATAACAAGGCCAAAATGGTATGGGGCGAGGACGTA
CCAGGCTGCTCTTTGAACACAGTGCGTCTACGGGTTACCTGCAAGCATCA
AAACATCGGAGAGGAGCGATTTAAGATCGCCGTGCTGATCGTTGGCATGC
AAAACCAGATTATGCACATCCGCACAGTTGTAGAGCGTACGGAGTACTTC
TCCGATACGTCGCGCGTCGTCAACCTGGACAACCTGCTGCCGTACGAGGA
GCTGGAGCACACATCACTGTACTTGAGTCCCCATCTGACGGGCACCGCTC
GCAACACGCTTACCCTGCACGTGGTCATCACGCCGATGGGCTCCCACACC
TGCCGAGATACGCCGCCGTTTCAGTTCTAAAAGCTTTCTAGACCAT

BS09723.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Tango10-RC 1764 CG1841-PC 1..1764 17..1780 8820 100 Plus
Tango10-RA 1764 CG1841-PA 1..1764 17..1780 8820 100 Plus
Tango10-RB 1764 CG1841-PB 1..1764 17..1780 8820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tango10-RC 3196 CG1841-RC 367..2132 17..1782 8830 100 Plus
Tango10-RA 3008 CG1841-RA 179..1944 17..1782 8830 100 Plus
Tango10-RB 3247 CG1841-RB 418..2183 17..1782 8830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11721198..11722183 382..1367 4930 100 Plus
X 23542271 X 11720662..11721027 17..382 1830 100 Plus
X 23542271 X 11722528..11722790 1520..1782 1300 99.6 Plus
X 23542271 X 11722250..11722408 1367..1525 795 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:34:20 has no hits.

BS09723.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:16 Download gff for BS09723.complete
Subject Subject Range Query Range Percent Splice Strand
Tango10-RA 179..1940 17..1778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:25 Download gff for BS09723.complete
Subject Subject Range Query Range Percent Splice Strand
Tango10-RB 418..2179 17..1778 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:43 Download gff for BS09723.complete
Subject Subject Range Query Range Percent Splice Strand
Tango10-RB 418..2179 17..1778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:43 Download gff for BS09723.complete
Subject Subject Range Query Range Percent Splice Strand
X 11720662..11721027 17..382 100 -> Plus
X 11721199..11722183 383..1367 100 -> Plus
X 11722251..11722408 1368..1525 100 -> Plus
X 11722534..11722786 1526..1778 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:25 Download gff for BS09723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11614695..11615060 17..382 100 -> Plus
arm_X 11615232..11616216 383..1367 100 -> Plus
arm_X 11616284..11616441 1368..1525 100 -> Plus
arm_X 11616567..11616819 1526..1778 100   Plus

BS09723.pep Sequence

Translation from 16 to 1779

> BS09723.pep
MNDNGNGGAAPVSGGVCGVGGAHGAAGGADGAGGAGGGGGCGAGGGGAGA
GPGGGPGGGAAAADLAGEAAGGAAGGDAAINNQANANGTSESPAKGLNSS
EDLDAKRRKCRETEEGQDEASTMIDANSVLNKIANLYAEQLMSDIVLLVD
GKEFPAHRVILCASSDVFQVMLMNPEWNECSKHVIELHEEACCSAVFPQF
IKYLYVGQIEVTLQTVMPMLALSDKYNIRDLIDLCVDYMNKHVAKAATSG
YLVSWLQYTLSFTPTHNDLTETLKRFLKWNLEMVAESRDFVEMDPAILIL
LLQQNDLVVTSEYKLFDILQTWLLHRREQMEATGSGGFMELIEQTVSHIR
FGMMTPRQLSHLLMDPLVEYHKEFLVERIAIGMSYQSGHEDRVREVRATE
SGKLQFTPRLYWNDTWSVDIDVHNFTAIEDYKNYVTCFFSQRHIAETEED
DPCMTWEIEFFPRGVRYNKAKMVWGEDVPGCSLNTVRLRVTCKHQNIGEE
RFKIAVLIVGMQNQIMHIRTVVERTEYFSDTSRVVNLDNLLPYEELEHTS
LYLSPHLTGTARNTLTLHVVITPMGSHTCRDTPPFQF*

BS09723.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tango10-PC 587 CG1841-PC 1..587 1..587 3104 100 Plus
Tango10-PA 587 CG1841-PA 1..587 1..587 3104 100 Plus
Tango10-PB 587 CG1841-PB 1..587 1..587 3104 100 Plus
lute-PA 677 CG5319-PA 76..395 5..330 184 23.7 Plus
lute-PC 727 CG43226-PC 126..445 5..330 184 23.7 Plus