Clone Sequence Records
BS09726.3prime Sequence
953 bp (906 high quality bases) assembled on 2006-04-19
> BS09726.3prime
ATGGTCTAGAAAGCTTCTATATGTAATTAAAGTCCACACAGTCGAGGATC
ACCTCGCGTATACGCTGTTTAAATGTAGCCTCGTTGCCCGCGCCCAGGAA
ACCAGCTCCATGGAGATCCGTAGTGGCCCCCGCCTCGATGCGCTCGCTAA
TTGCCTGAAGGTCGGGCACATCCTGACCCTGCATCGTTACAATGGGTAGA
ACCATCATGGCGAGAAGCAGGCCCACAGCCGCTTTGGTAGCCACCTGTTC
ATCGAATGCAGGACGGGGAAAAAGTTGCTCCACCCGCTCGCCTAGTCTAA
TCAGCTGCAGGCCCAACTCTTCATAGTAATCCTCGAGCATATTTTCGAGG
TGTCGCTGCCGGAATCGCCGCGAAGTGCAAGTGAAGAGGAAGTAAGCTAG
ATCGGTGACCGGCGAGGCATATCGCATCAGTTGCCAGTCGATCAGGCGCA
CGTCCTCGAGCTCGCCCCGCTCTGTACTCTTGTAGAGAATGTTGTTATTC
CAGCAATCGCCGTGGCAAATAACAGCGAAGGGTTCGCAATTGAATCCGCT
GACCAAAGGCAGCAGCAGCTCAAAGTACGATCCTCTGGCGAAGTACGCCT
CCAGACGAACTCTGTATGCATCATCCGCCGGTGCGAGCAGTGCGGATAGG
GCGCTTTCCTTCAGATTCTCGAAGTAGACCCCCAAGGCATGATCATCGCG
TCGCTGCTCAAAGATATCCACCAGCTGCTGCAGTTGTTGCATTTTCTCGG
GCAACTGCCGTTTCCCGGCCAATGATATAGCATGTAATTTGGCATAGGTG
AGCATTACGCGACGCACATGCTCGACGGATAGGTCGAGAAAGCGATTGTG
CAGTGAGAAGCCGGCACAAGACAGATCCTCCAGCACGATGCACTCGTTGG
GCTCATCCTGGCGAGTTCCGAACAGAGCGCGTGCTGCCGGAAACGATCAT
CTC
BS09726.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-PA | 1293 | CG1561-RA | 388..1293 | 922..17 | 4530 | 100 | Minus |
| CG1561-PB | 1908 | CG1561-RB | 1003..1908 | 922..17 | 4530 | 100 | Minus |
| CG1561-PA | 1293 | CG1561-RA | 356..388 | 953..921 | 165 | 100 | Minus |
| CG1561-PB | 1908 | CG1561-RB | 971..1003 | 953..921 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-RB | 2160 | CG1561-RB | 986..1924 | 953..16 | 4670 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11582533..11583190 | 297..953 | 3240 | 99.8 | Plus |
| X | 23542271 | X | 11582193..11582475 | 16..298 | 1415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:44:29 has no hits.
BS09726.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:11 Download gff for
BS09726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-PB | 971..1908 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:10 Download gff for
BS09726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-PB | 971..1908 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:31:21 Download gff for
BS09726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 986..1924 | 16..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:42 Download gff for
BS09726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 986..1924 | 16..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:42 Download gff for
BS09726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11582193..11582473 | 16..296 | 100 | <- | Plus |
| X | 11582533..11583190 | 297..953 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:31:21 Download gff for
BS09726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11476226..11476506 | 16..296 | 100 | <- | Plus |
| arm_X | 11476566..11477223 | 297..953 | 99 | | Plus |
BS09726.5prime Sequence
840 bp (823 high quality bases) assembled on 2006-04-19
> BS09726.5prime
GAAGTTATCAGTCGACATGGAGAGTCCTGTAGAGCAACAAGAGGACACAG
CCAAGCCAGACGAAGATCTGCCCAACGAGCAGGTTACACAGTTCCTTCGC
CAACTGGTCAGCCAGCTGTGGCCAGAGCTGGGCGCCAATCCGGAACTGCG
TCTGGAAAGGGCGAGTGCCAAGGGCGACAACTATTTGGGCGTGGTGTGGC
GCCTACAGGCGGCATCCGATTCGAAACGCAGCCTGGTGGTTAAACTGCCG
CCACAGAATCGCGTGCGCCGCAAGCAATTCTTTGCACGACCATGTTTCCT
GCGCGAGACGGCAGCATATGAGGTCTTTCTGCCGCTGACTGCGTTAATTC
AGGATAAGTGGAAGATAATCGGAGATGATCGTTTCCGGCAGCACGCGCTC
TGTTTCGGAACTCGCCAGGATGAGCCCAACGAGTGCATCGTGCTGGAGGA
TCTGTCTTGTGCCGGCTTCTCACTGCACAATCGCTTTCTCGACCTATCCG
TCGAGCATGTGCGTCGCGTAATGCTCACCTATGCCAAATTACATGCTATA
TCATTGGCCGGGAAACGGCAGTTGCCCGAGAAAATGCAACAACTGCAGCA
GCTGGTGGATATCTTTGAGCAGCGACGCGATGATCATGCCTTGGGGGTCT
ACTTCGAGAATCTGAAGGAAAGCGCCCTATCCGCACTGCTCGCACCGGCG
GATGATGCATACAGAGTTCGTCTGGAGGCGTACTTCGCCAGAGGATCGTA
CTTTGAGCTGCTGCTGCCTTTGGTCAGCGGATTCAATTGCGAACCCTTCG
CTGTTATTTGCCACGGCGATTGCTGGAAATACACATTCTC
BS09726.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-PA | 1293 | CG1561-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
| CG1561-PB | 1908 | CG1561-RB | 616..1427 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-RB | 2160 | CG1561-RB | 631..1455 | 17..840 | 4070 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11582734..11583545 | 828..17 | 4060 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:26:24 has no hits.
BS09726.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:12 Download gff for
BS09726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-PB | 608..1440 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:12 Download gff for
BS09726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-PB | 608..1440 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:44:56 Download gff for
BS09726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 623..1455 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:10 Download gff for
BS09726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 623..1455 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:10 Download gff for
BS09726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11582721..11583549 | 9..840 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:44:56 Download gff for
BS09726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11476754..11477582 | 9..840 | 99 | | Minus |
BS09726.complete Sequence
1325 bp (1325 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636470
> BS09726.complete
GAAGTTATCAGTCGACATGGAGAGTCCTGTAGAGCAACAAGAGGACACAG
CCAAGCCAGACGAAGATCTGCCCAACGAGCAGGTTACACAGTTCCTTCGC
CAACTGGTCAGCCAGCTGTGGCCAGAGCTGGGCGCCAATCCGGAACTGCG
TCTGGAAAGGGCGAGTGCCAAGGGCGACAACTATTTGGGCGTGGTGTGGC
GCCTACAGGCGGCATCCGATTCGAAACGCAGCCTGGTGGTTAAACTGCCG
CCACAGAATCGCGTGCGCCGCAAGCAATTCTTTGCACGACCATGTTTCCT
GCGCGAGACGGCAGCATATGAGGTCTTTCTGCCGCTGACTGCGTTAATTC
AGGATAAGTGGAAGATAATCGGAGATGATCGTTTCCGGCAGCACGCGCTC
TGTTTCGGAACTCGCCAGGATGAGCCCAACGAGTGCATCGTGCTGGAGGA
TCTGTCTTGTGCCGGCTTCTCACTGCACAATCGCTTTCTCGACCTATCCG
TCGAGCATGTGCGTCGCGTAATGCTCACCTATGCCAAATTACATGCTATA
TCATTGGCCGGGAAACGGCAGTTGCCCGAGAAAATGCAACAACTGCAGCA
GCTGGTGGATATCTTTGAGCAGCGACGCGATGATCATGCCTTGGGGGTCT
ACTTCGAGAATCTGAAGGAAAGCGCCCTATCCGCACTGCTCGCACCGGCG
GATGATGCATACAGAGTTCGTCTGGAGGCGTACTTCGCCAGAGGATCGTA
CTTTGAGCTGCTGCTGCCTTTGGTCAGCGGATTCAATTGCGAACCCTTCG
CTGTTATTTGCCACGGCGATTGCTGGAATAACAACATTCTCTACAAGAGT
ACAGAGCGGGGCGAGCTCGAGGACGTGCGCCTGATCGACTGGCAACTGAT
GCGATATGCCTCGCCGGTCACCGATCTAGCTTACTTCCTCTTCACTTGCA
CTTCGCGGCGATTCCGGCAGCGACACCTCGAAAATATGCTCGAGGATTAC
TATGAAGAGTTGGGCCTGCAGCTGATTAGACTAGGCGAGCGGGTGGAGCA
ACTTTTTCCCCGTCCTGCATTCGATGAACAGGTGGCTACCAAAGCGGCTG
TGGGCCTGCTTCTCGCCATGATGGTTCTACCCATTGTAACGATGCAGGGT
CAGGATGTGCCCGACCTTCAGGCAATTAGCGAGCGCATCGAGGCGGGGGC
CACTACGGATCTCCATGGAGCTGGTTTCCTGGGCGCGGGCAACGAGGCTA
CATTTAAACAGCGTATACGCGAGGTGATCCTCGACTGTGTGGACTTTAAT
TACATATAGAAGCTTTCTAGACCAT
BS09726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-RB | 1908 | CG1561-PB | 616..1908 | 17..1309 | 6465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-RB | 2160 | CG1561-RB | 631..1924 | 17..1310 | 6470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11582533..11583545 | 1029..17 | 5065 | 100 | Minus |
| X | 23542271 | X | 11582193..11582475 | 1310..1028 | 1415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:20:27 has no hits.
BS09726.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:27 Download gff for
BS09726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 608..1908 | 9..1309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:25 Download gff for
BS09726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 608..1909 | 9..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:50 Download gff for
BS09726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 631..1923 | 17..1309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:27 Download gff for
BS09726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 608..1909 | 9..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:22 Download gff for
BS09726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1561-RB | 631..1923 | 17..1309 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:22 Download gff for
BS09726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11582194..11582473 | 1030..1309 | 100 | <- | Minus |
| X | 11582533..11583545 | 17..1029 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:50 Download gff for
BS09726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11476227..11476506 | 1030..1309 | 100 | <- | Minus |
| arm_X | 11476566..11477578 | 17..1029 | 100 | | Minus |
BS09726.pep Sequence
Translation from 16 to 1308
> BS09726.pep
MESPVEQQEDTAKPDEDLPNEQVTQFLRQLVSQLWPELGANPELRLERAS
AKGDNYLGVVWRLQAASDSKRSLVVKLPPQNRVRRKQFFARPCFLRETAA
YEVFLPLTALIQDKWKIIGDDRFRQHALCFGTRQDEPNECIVLEDLSCAG
FSLHNRFLDLSVEHVRRVMLTYAKLHAISLAGKRQLPEKMQQLQQLVDIF
EQRRDDHALGVYFENLKESALSALLAPADDAYRVRLEAYFARGSYFELLL
PLVSGFNCEPFAVICHGDCWNNNILYKSTERGELEDVRLIDWQLMRYASP
VTDLAYFLFTCTSRRFRQRHLENMLEDYYEELGLQLIRLGERVEQLFPRP
AFDEQVATKAAVGLLLAMMVLPIVTMQGQDVPDLQAISERIEAGATTDLH
GAGFLGAGNEATFKQRIREVILDCVDFNYI*
BS09726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1561-PB | 635 | CG1561-PB | 206..635 | 1..430 | 2232 | 100 | Plus |
| CG13813-PA | 430 | CG13813-PA | 34..417 | 53..428 | 372 | 26.6 | Plus |
| CG14314-PA | 438 | CG14314-PA | 49..434 | 46..426 | 372 | 28.2 | Plus |
| CG5644-PA | 459 | CG5644-PA | 33..452 | 21..430 | 315 | 27.6 | Plus |
| CG2004-PG | 425 | CG2004-PG | 42..424 | 52..430 | 311 | 26.7 | Plus |
