Clone Sequence Records
BS09727.3prime Sequence
899 bp (701 high quality bases) assembled on 2006-04-19
> BS09727.3prime
ATGGTCTAGAAAGCTTTCAGACGCGCAGCTTGGCAACGGCATTCTGAAGA
ATCTGGAACTCGGAGTTAATGTTGTCCATCAGATTCGAAATCTGGGGCTT
CGAGTCGAGAACCTCAACACTCTGAGTATAGGCATTGTAGCGAACACCAA
AGGGTCGGGGAATCGAGTTCGCAAATTTAATGGTCTTCTCCTTGGCGGTT
TCGAAACTATCGGCCACATAGTACAGAGGCTGGAACTGAGTAATGGGATA
CTTGGTGACGCCAGTGACCTCCGGCTCAAAGTCCTTCAGCTGCGGCTTGT
CCGTGAGGCAATACTCCAGTTCCCCGTAGGAGGACAGCAGACCAGCTCCG
TACGCCTTCAACTCACCCTCCTGGCGGCACACGCCGTACTCAACAGTGAA
CCAGAAGATGGTGGACAATTTCTCAATGTAATCATCGGGTGCTCCCAGGG
AAGCTAGCCCGATCTCCTGACTGAATTGGGCAAAAGCTGGATCTGCAAAA
AGCGGCACGTGGCCCATCAGCTCGTGGCAGACATCTGGTTCCGGTGTGTA
CATGGGCTTGCTGGGATGTCGGATATACTGAGTGGAGTGGAAGACGCGGA
AGGCCAGTCCAGCCAGGAAATCCCGAGAGCTGAGTAGTCCAGCCACTGGA
CGCAGAGTGAAACCTGTGCAATCCCTCAAAAAGTTGGACACATCCTCCAG
CTGGGGAATGTTATCCTCTCGGAATCCACAGTTGTCCACCAGCAAGGGAA
AGACGTGGTTGTACTCGCGACAGGCATGTGTCTTATACAGCTTCGTAAGA
TTCCTGAAGATAATGCCCCANGTCTCGATCTCCTCCTTGGTGTAATCCAC
ATGGGGCAAGGGCTCGCCATGCTTGTAGTTGTAGGGCATGTCGGCGAAG
BS09727.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7399-PA | 1359 | Hn-RA | 477..1359 | 899..17 | 4346 | 99.6 | Minus |
CG7399-PB | 1344 | Hn-RB | 462..1344 | 899..17 | 4346 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hn-RD | 1821 | CG7399-RD | 847..1729 | 899..17 | 4374 | 99.7 | Minus |
Hn-RC | 1527 | CG7399-RC | 553..1435 | 899..17 | 4374 | 99.7 | Minus |
Hn-RB | 1617 | CG7399-RB | 643..1525 | 899..17 | 4374 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7762293..7762556 | 673..410 | 1320 | 100 | Minus |
3L | 28110227 | 3L | 7762622..7762851 | 409..180 | 1150 | 100 | Minus |
3L | 28110227 | 3L | 7762009..7762235 | 899..673 | 1094 | 98.7 | Minus |
3L | 28110227 | 3L | 7762912..7763074 | 179..17 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:39:01 has no hits.
BS09727.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:13 Download gff for
BS09727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7399-PA | 477..1359 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:13 Download gff for
BS09727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7399-PB | 462..1344 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:20:07 Download gff for
BS09727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hn-RB | 643..1534 | 9..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:58:22 Download gff for
BS09727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hn-RB | 643..1534 | 9..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:58:22 Download gff for
BS09727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7762009..7762235 | 673..899 | 98 | -> | Minus |
3L | 7762294..7762556 | 410..672 | 100 | -> | Minus |
3L | 7762622..7762851 | 180..409 | 100 | -> | Minus |
3L | 7762912..7763083 | 9..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:20:07 Download gff for
BS09727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7755109..7755335 | 673..899 | 98 | -> | Minus |
arm_3L | 7755394..7755656 | 410..672 | 100 | -> | Minus |
arm_3L | 7755722..7755951 | 180..409 | 100 | -> | Minus |
arm_3L | 7756012..7756183 | 9..179 | 97 | | Minus |
BS09727.5prime Sequence
922 bp (849 high quality bases) assembled on 2006-04-19
> BS09727.5prime
GAAGTTATCAGTCGACATGTACCAGCGGCAGGTCTCCTTTGATAAGCCAA
CGCGCGTAGAGGATTCGGCTTACATAGTCGAGGGTGTAGATATTAAGGAG
GCCAGGAACACCTGTCTTCTGTTTTCGCCCAAGGATTCGTCGTTGTCCAG
CGGAGCTTTGGCCAACATTTTGGCCATCTTCAAGAAGCATGACATAAACC
TGGTGCATATTGAGTCGCGTTCCTCGCTGCGTGTTCCCGGTTATGAGTTT
TTCGTGGAGGCCGATGGAAAATCGGGAGCCTTGGGAAAAGCCATCGAGGA
TGTGAAGGAGCAGTGTAGCTACTTTAACATCATTTCGCGTGACTACAAGG
ATAATGCCACGGCTGTGCCCTGGTTCCCGCGGCGTATACGCGATCTGGAT
CGTTTCGCCAATCAGATTCTGAGCTACGGATCGGAGCTGGATGCCGATCA
TCCTGGTTTTACCGATCCGGAATACCGCAAGCGTCGCAAGTACTTCGCCG
ACATTGCCTACAACTACAAGCATGGCGAGCCCTTGCCCCATGTGGATTAC
ACCAAGGAGGAGATCGAGACCTGGGGCATTATCTTCAGGAATCTTACGAA
GCTGTATAAGACACATGCCTGTCGCGAGTACAACCACGTCTTTCCCTTGC
TGGTGGACAACTGTGGATTCCGAGAGGATAACATTCCCCAGCTGGAGGAT
GTGTCCAACTTTTTGAGGGATTGCACAGGTTTCACTCTGCGTCCAGTGGC
TGGACTACTCAGCTCTCGGGATTTCCTGGCTGGACTGGCCTTCCGCGTCT
TCCACTCCACTCAGTATATCCGACATCCCAGCAAGCCCATGTACACACCG
GGACCAGATGTCTGCCACGAGCTGATGGGCCACGTGCCGCTTTTTGCAGA
TCCAGCTTTTGCCAATTCAGTC
BS09727.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7399-PA | 1359 | Hn-RA | 1..897 | 17..913 | 4460 | 99.8 | Plus |
CG7399-PB | 1344 | Hn-RB | 14..882 | 45..913 | 4320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hn-RC | 1527 | CG7399-RC | 77..983 | 17..922 | 4495 | 99.8 | Plus |
Hn-RA | 1625 | CG7399-RA | 175..1081 | 17..922 | 4495 | 99.8 | Plus |
Hn-RD | 1821 | CG7399-RD | 399..1277 | 45..922 | 4355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7761561..7762235 | 45..719 | 3375 | 100 | Plus |
3L | 28110227 | 3L | 7762293..7762487 | 719..913 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:47:21 has no hits.
BS09727.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:14 Download gff for
BS09727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7399-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:14 Download gff for
BS09727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7399-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:35 Download gff for
BS09727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hn-RA | 169..1081 | 11..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:18 Download gff for
BS09727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hn-RA | 169..1081 | 11..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:18 Download gff for
BS09727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7760621..7760656 | 11..46 | 91 | -> | Plus |
3L | 7761563..7762235 | 47..719 | 100 | -> | Plus |
3L | 7762294..7762497 | 720..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:35 Download gff for
BS09727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7753721..7753756 | 11..46 | 91 | -> | Plus |
arm_3L | 7754663..7755335 | 47..719 | 100 | -> | Plus |
arm_3L | 7755394..7755597 | 720..922 | 99 | | Plus |
BS09727.complete Sequence
1391 bp (1391 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636471
> BS09727.complete
GAAGTTATCAGTCGACATGTACCAGCGGCAGGTCTCCTTTGATAAGCCAA
CGCGCGTAGAGGATTCGGCTTACATAGTCGAGGGTGTAGATATTAAGGAG
GCCAGGAACACCTGTCTTCTGTTTTCGCCCAAGGATTCGTCGTTGTCCAG
CGGAGCTTTGGCCAACATTTTGGCCATCTTCAAGAAGCATGACATAAACC
TGGTGCATATTGAGTCGCGTTCCTCGCTGCGTGTTCCCGGTTATGAGTTT
TTCGTGGAGGCCGATGGAAAATCGGGAGCCTTGGGAAAAGCCATCGAGGA
TGTGAAGGAGCAGTGTAGCTACTTTAACATCATTTCGCGTGACTACAAGG
ATAATGCCACGGCTGTGCCCTGGTTCCCGCGGCGTATACGCGATCTGGAT
CGTTTCGCCAATCAGATTCTGAGCTACGGATCGGAGCTGGATGCCGATCA
TCCTGGTTTTACCGATCCGGAATACCGCAAGCGTCGCAAGTACTTCGCCG
ACATTGCCTACAACTACAAGCATGGCGAGCCCTTGCCCCATGTGGATTAC
ACCAAGGAGGAGATCGAGACCTGGGGCATTATCTTCAGGAATCTTACGAA
GCTGTATAAGACACATGCCTGTCGCGAGTACAACCACGTCTTTCCCTTGC
TGGTGGACAACTGTGGATTCCGAGAGGATAACATTCCCCAGCTGGAGGAT
GTGTCCAACTTTTTGAGGGATTGCACAGGTTTCACTCTGCGTCCAGTGGC
TGGACTACTCAGCTCTCGGGATTTCCTGGCTGGACTGGCCTTCCGCGTCT
TCCACTCCACTCAGTATATCCGACATCCCAGCAAGCCCATGTACACACCG
GAACCAGATGTCTGCCACGAGCTGATGGGCCACGTGCCGCTTTTTGCAGA
TCCAGCTTTTGCCCAATTCAGTCAGGAGATCGGGCTAGCTTCCCTGGGAG
CACCCGATGATTACATTGAGAAATTGTCCACCATCTTCTGGTTCACTGTT
GAGTACGGCGTGTGCCGCCAGGAGGGTGAGTTGAAGGCGTACGGAGCTGG
TCTGCTGTCCTCCTACGGGGAACTGGAGTATTGCCTCACGGACAAGCCGC
AGCTGAAGGACTTTGAGCCGGAGGTCACTGGCGTCACCAAGTATCCCATT
ACTCAGTTCCAGCCTCTGTACTATGTGGCCGATAGTTTCGAAACCGCCAA
GGAGAAGACCATTAAATTTGCGAACTCGATTCCCCGACCCTTTGGTGTTC
GCTACAATGCCTATACTCAGAGTGTTGAGGTTCTCGACTCGAAGCCCCAG
ATTTCGAATCTGATGGACAACATTAACTCCGAGTTCCAGATTCTTCAGAA
TGCCGTTGCCAAGCTGCGCGTCTGAAAGCTTTCTAGACCAT
BS09727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hn-RC | 1359 | CG7399-PC | 1..1359 | 17..1375 | 6795 | 100 | Plus |
Hn-RA | 1359 | CG7399-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
Hn-RB | 1344 | CG7399-PB | 14..1344 | 45..1375 | 6655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hn-RC | 1527 | CG7399-RC | 77..1435 | 17..1375 | 6795 | 100 | Plus |
Hn-RA | 1625 | CG7399-RA | 175..1533 | 17..1375 | 6795 | 100 | Plus |
Hn-RD | 1821 | CG7399-RD | 399..1729 | 45..1375 | 6655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7761561..7762235 | 45..719 | 3375 | 100 | Plus |
3L | 28110227 | 3L | 7762293..7762556 | 719..982 | 1320 | 100 | Plus |
3L | 28110227 | 3L | 7762622..7762851 | 983..1212 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 7762912..7763074 | 1213..1375 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:35:41 has no hits.
BS09727.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:28 Download gff for
BS09727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hn-RA | 1..1359 | 17..1375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:27 Download gff for
BS09727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hn-RA | 145..1518 | 11..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:32 Download gff for
BS09727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hn-RA | 175..1532 | 17..1374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:28 Download gff for
BS09727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hn-RA | 145..1518 | 11..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:26 Download gff for
BS09727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hn-RA | 175..1532 | 17..1374 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:26 Download gff for
BS09727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7760627..7760656 | 17..46 | 100 | -> | Plus |
3L | 7761563..7762235 | 47..719 | 100 | -> | Plus |
3L | 7762294..7762556 | 720..982 | 100 | -> | Plus |
3L | 7762622..7762851 | 983..1212 | 100 | -> | Plus |
3L | 7762912..7763073 | 1213..1374 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:32 Download gff for
BS09727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7753727..7753756 | 17..46 | 100 | -> | Plus |
arm_3L | 7754663..7755335 | 47..719 | 100 | -> | Plus |
arm_3L | 7755394..7755656 | 720..982 | 100 | -> | Plus |
arm_3L | 7755722..7755951 | 983..1212 | 100 | -> | Plus |
arm_3L | 7756012..7756173 | 1213..1374 | 100 | | Plus |
BS09727.pep Sequence
Translation from 16 to 1374
> BS09727.pep
MYQRQVSFDKPTRVEDSAYIVEGVDIKEARNTCLLFSPKDSSLSSGALAN
ILAIFKKHDINLVHIESRSSLRVPGYEFFVEADGKSGALGKAIEDVKEQC
SYFNIISRDYKDNATAVPWFPRRIRDLDRFANQILSYGSELDADHPGFTD
PEYRKRRKYFADIAYNYKHGEPLPHVDYTKEEIETWGIIFRNLTKLYKTH
ACREYNHVFPLLVDNCGFREDNIPQLEDVSNFLRDCTGFTLRPVAGLLSS
RDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDVCHELMGHVPLFADPAFAQ
FSQEIGLASLGAPDDYIEKLSTIFWFTVEYGVCRQEGELKAYGAGLLSSY
GELEYCLTDKPQLKDFEPEVTGVTKYPITQFQPLYYVADSFETAKEKTIK
FANSIPRPFGVRYNAYTQSVEVLDSKPQISNLMDNINSEFQILQNAVAKL
RV*
BS09727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hn-PC | 452 | CG7399-PC | 1..452 | 1..452 | 2392 | 100 | Plus |
Hn-PA | 452 | CG7399-PA | 1..452 | 1..452 | 2392 | 100 | Plus |
Hn-PB | 447 | CG7399-PB | 5..447 | 10..452 | 2341 | 99.8 | Plus |
Trh-PA | 555 | CG9122-PA | 90..508 | 46..450 | 1047 | 50.5 | Plus |
ple-PA | 508 | CG10118-PA | 77..505 | 22..451 | 1022 | 47.1 | Plus |