Clone BS09727 Report

Search the DGRC for BS09727

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptHn-RA
Protein status:BS09727.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09727.3prime Sequence

899 bp (701 high quality bases) assembled on 2006-04-19

> BS09727.3prime
ATGGTCTAGAAAGCTTTCAGACGCGCAGCTTGGCAACGGCATTCTGAAGA
ATCTGGAACTCGGAGTTAATGTTGTCCATCAGATTCGAAATCTGGGGCTT
CGAGTCGAGAACCTCAACACTCTGAGTATAGGCATTGTAGCGAACACCAA
AGGGTCGGGGAATCGAGTTCGCAAATTTAATGGTCTTCTCCTTGGCGGTT
TCGAAACTATCGGCCACATAGTACAGAGGCTGGAACTGAGTAATGGGATA
CTTGGTGACGCCAGTGACCTCCGGCTCAAAGTCCTTCAGCTGCGGCTTGT
CCGTGAGGCAATACTCCAGTTCCCCGTAGGAGGACAGCAGACCAGCTCCG
TACGCCTTCAACTCACCCTCCTGGCGGCACACGCCGTACTCAACAGTGAA
CCAGAAGATGGTGGACAATTTCTCAATGTAATCATCGGGTGCTCCCAGGG
AAGCTAGCCCGATCTCCTGACTGAATTGGGCAAAAGCTGGATCTGCAAAA
AGCGGCACGTGGCCCATCAGCTCGTGGCAGACATCTGGTTCCGGTGTGTA
CATGGGCTTGCTGGGATGTCGGATATACTGAGTGGAGTGGAAGACGCGGA
AGGCCAGTCCAGCCAGGAAATCCCGAGAGCTGAGTAGTCCAGCCACTGGA
CGCAGAGTGAAACCTGTGCAATCCCTCAAAAAGTTGGACACATCCTCCAG
CTGGGGAATGTTATCCTCTCGGAATCCACAGTTGTCCACCAGCAAGGGAA
AGACGTGGTTGTACTCGCGACAGGCATGTGTCTTATACAGCTTCGTAAGA
TTCCTGAAGATAATGCCCCANGTCTCGATCTCCTCCTTGGTGTAATCCAC
ATGGGGCAAGGGCTCGCCATGCTTGTAGTTGTAGGGCATGTCGGCGAAG

BS09727.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7399-PA 1359 Hn-RA 477..1359 899..17 4346 99.6 Minus
CG7399-PB 1344 Hn-RB 462..1344 899..17 4346 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Hn-RD 1821 CG7399-RD 847..1729 899..17 4374 99.7 Minus
Hn-RC 1527 CG7399-RC 553..1435 899..17 4374 99.7 Minus
Hn-RB 1617 CG7399-RB 643..1525 899..17 4374 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7762293..7762556 673..410 1320 100 Minus
3L 28110227 3L 7762622..7762851 409..180 1150 100 Minus
3L 28110227 3L 7762009..7762235 899..673 1094 98.7 Minus
3L 28110227 3L 7762912..7763074 179..17 815 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:39:01 has no hits.

BS09727.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:13 Download gff for BS09727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7399-PA 477..1359 17..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:13 Download gff for BS09727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7399-PB 462..1344 17..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:20:07 Download gff for BS09727.3prime
Subject Subject Range Query Range Percent Splice Strand
Hn-RB 643..1534 9..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:58:22 Download gff for BS09727.3prime
Subject Subject Range Query Range Percent Splice Strand
Hn-RB 643..1534 9..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:58:22 Download gff for BS09727.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7762009..7762235 673..899 98 -> Minus
3L 7762294..7762556 410..672 100 -> Minus
3L 7762622..7762851 180..409 100 -> Minus
3L 7762912..7763083 9..179 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:20:07 Download gff for BS09727.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7755109..7755335 673..899 98 -> Minus
arm_3L 7755394..7755656 410..672 100 -> Minus
arm_3L 7755722..7755951 180..409 100 -> Minus
arm_3L 7756012..7756183 9..179 97   Minus

BS09727.5prime Sequence

922 bp (849 high quality bases) assembled on 2006-04-19

> BS09727.5prime
GAAGTTATCAGTCGACATGTACCAGCGGCAGGTCTCCTTTGATAAGCCAA
CGCGCGTAGAGGATTCGGCTTACATAGTCGAGGGTGTAGATATTAAGGAG
GCCAGGAACACCTGTCTTCTGTTTTCGCCCAAGGATTCGTCGTTGTCCAG
CGGAGCTTTGGCCAACATTTTGGCCATCTTCAAGAAGCATGACATAAACC
TGGTGCATATTGAGTCGCGTTCCTCGCTGCGTGTTCCCGGTTATGAGTTT
TTCGTGGAGGCCGATGGAAAATCGGGAGCCTTGGGAAAAGCCATCGAGGA
TGTGAAGGAGCAGTGTAGCTACTTTAACATCATTTCGCGTGACTACAAGG
ATAATGCCACGGCTGTGCCCTGGTTCCCGCGGCGTATACGCGATCTGGAT
CGTTTCGCCAATCAGATTCTGAGCTACGGATCGGAGCTGGATGCCGATCA
TCCTGGTTTTACCGATCCGGAATACCGCAAGCGTCGCAAGTACTTCGCCG
ACATTGCCTACAACTACAAGCATGGCGAGCCCTTGCCCCATGTGGATTAC
ACCAAGGAGGAGATCGAGACCTGGGGCATTATCTTCAGGAATCTTACGAA
GCTGTATAAGACACATGCCTGTCGCGAGTACAACCACGTCTTTCCCTTGC
TGGTGGACAACTGTGGATTCCGAGAGGATAACATTCCCCAGCTGGAGGAT
GTGTCCAACTTTTTGAGGGATTGCACAGGTTTCACTCTGCGTCCAGTGGC
TGGACTACTCAGCTCTCGGGATTTCCTGGCTGGACTGGCCTTCCGCGTCT
TCCACTCCACTCAGTATATCCGACATCCCAGCAAGCCCATGTACACACCG
GGACCAGATGTCTGCCACGAGCTGATGGGCCACGTGCCGCTTTTTGCAGA
TCCAGCTTTTGCCAATTCAGTC

BS09727.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7399-PA 1359 Hn-RA 1..897 17..913 4460 99.8 Plus
CG7399-PB 1344 Hn-RB 14..882 45..913 4320 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Hn-RC 1527 CG7399-RC 77..983 17..922 4495 99.8 Plus
Hn-RA 1625 CG7399-RA 175..1081 17..922 4495 99.8 Plus
Hn-RD 1821 CG7399-RD 399..1277 45..922 4355 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7761561..7762235 45..719 3375 100 Plus
3L 28110227 3L 7762293..7762487 719..913 960 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 19:47:21 has no hits.

BS09727.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:14 Download gff for BS09727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7399-PA 1..907 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:14 Download gff for BS09727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7399-PA 1..907 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:35 Download gff for BS09727.5prime
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 169..1081 11..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:18 Download gff for BS09727.5prime
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 169..1081 11..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:18 Download gff for BS09727.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7760621..7760656 11..46 91 -> Plus
3L 7761563..7762235 47..719 100 -> Plus
3L 7762294..7762497 720..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:35 Download gff for BS09727.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7753721..7753756 11..46 91 -> Plus
arm_3L 7754663..7755335 47..719 100 -> Plus
arm_3L 7755394..7755597 720..922 99   Plus

BS09727.complete Sequence

1391 bp (1391 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636471

> BS09727.complete
GAAGTTATCAGTCGACATGTACCAGCGGCAGGTCTCCTTTGATAAGCCAA
CGCGCGTAGAGGATTCGGCTTACATAGTCGAGGGTGTAGATATTAAGGAG
GCCAGGAACACCTGTCTTCTGTTTTCGCCCAAGGATTCGTCGTTGTCCAG
CGGAGCTTTGGCCAACATTTTGGCCATCTTCAAGAAGCATGACATAAACC
TGGTGCATATTGAGTCGCGTTCCTCGCTGCGTGTTCCCGGTTATGAGTTT
TTCGTGGAGGCCGATGGAAAATCGGGAGCCTTGGGAAAAGCCATCGAGGA
TGTGAAGGAGCAGTGTAGCTACTTTAACATCATTTCGCGTGACTACAAGG
ATAATGCCACGGCTGTGCCCTGGTTCCCGCGGCGTATACGCGATCTGGAT
CGTTTCGCCAATCAGATTCTGAGCTACGGATCGGAGCTGGATGCCGATCA
TCCTGGTTTTACCGATCCGGAATACCGCAAGCGTCGCAAGTACTTCGCCG
ACATTGCCTACAACTACAAGCATGGCGAGCCCTTGCCCCATGTGGATTAC
ACCAAGGAGGAGATCGAGACCTGGGGCATTATCTTCAGGAATCTTACGAA
GCTGTATAAGACACATGCCTGTCGCGAGTACAACCACGTCTTTCCCTTGC
TGGTGGACAACTGTGGATTCCGAGAGGATAACATTCCCCAGCTGGAGGAT
GTGTCCAACTTTTTGAGGGATTGCACAGGTTTCACTCTGCGTCCAGTGGC
TGGACTACTCAGCTCTCGGGATTTCCTGGCTGGACTGGCCTTCCGCGTCT
TCCACTCCACTCAGTATATCCGACATCCCAGCAAGCCCATGTACACACCG
GAACCAGATGTCTGCCACGAGCTGATGGGCCACGTGCCGCTTTTTGCAGA
TCCAGCTTTTGCCCAATTCAGTCAGGAGATCGGGCTAGCTTCCCTGGGAG
CACCCGATGATTACATTGAGAAATTGTCCACCATCTTCTGGTTCACTGTT
GAGTACGGCGTGTGCCGCCAGGAGGGTGAGTTGAAGGCGTACGGAGCTGG
TCTGCTGTCCTCCTACGGGGAACTGGAGTATTGCCTCACGGACAAGCCGC
AGCTGAAGGACTTTGAGCCGGAGGTCACTGGCGTCACCAAGTATCCCATT
ACTCAGTTCCAGCCTCTGTACTATGTGGCCGATAGTTTCGAAACCGCCAA
GGAGAAGACCATTAAATTTGCGAACTCGATTCCCCGACCCTTTGGTGTTC
GCTACAATGCCTATACTCAGAGTGTTGAGGTTCTCGACTCGAAGCCCCAG
ATTTCGAATCTGATGGACAACATTAACTCCGAGTTCCAGATTCTTCAGAA
TGCCGTTGCCAAGCTGCGCGTCTGAAAGCTTTCTAGACCAT

BS09727.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Hn-RC 1359 CG7399-PC 1..1359 17..1375 6795 100 Plus
Hn-RA 1359 CG7399-PA 1..1359 17..1375 6795 100 Plus
Hn-RB 1344 CG7399-PB 14..1344 45..1375 6655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Hn-RC 1527 CG7399-RC 77..1435 17..1375 6795 100 Plus
Hn-RA 1625 CG7399-RA 175..1533 17..1375 6795 100 Plus
Hn-RD 1821 CG7399-RD 399..1729 45..1375 6655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7761561..7762235 45..719 3375 100 Plus
3L 28110227 3L 7762293..7762556 719..982 1320 100 Plus
3L 28110227 3L 7762622..7762851 983..1212 1150 100 Plus
3L 28110227 3L 7762912..7763074 1213..1375 815 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:35:41 has no hits.

BS09727.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:28 Download gff for BS09727.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 1..1359 17..1375 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:27 Download gff for BS09727.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 145..1518 11..1383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:32 Download gff for BS09727.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 175..1532 17..1374 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:28 Download gff for BS09727.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 145..1518 11..1383 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:26 Download gff for BS09727.complete
Subject Subject Range Query Range Percent Splice Strand
Hn-RA 175..1532 17..1374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:26 Download gff for BS09727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7760627..7760656 17..46 100 -> Plus
3L 7761563..7762235 47..719 100 -> Plus
3L 7762294..7762556 720..982 100 -> Plus
3L 7762622..7762851 983..1212 100 -> Plus
3L 7762912..7763073 1213..1374 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:32 Download gff for BS09727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7753727..7753756 17..46 100 -> Plus
arm_3L 7754663..7755335 47..719 100 -> Plus
arm_3L 7755394..7755656 720..982 100 -> Plus
arm_3L 7755722..7755951 983..1212 100 -> Plus
arm_3L 7756012..7756173 1213..1374 100   Plus

BS09727.pep Sequence

Translation from 16 to 1374

> BS09727.pep
MYQRQVSFDKPTRVEDSAYIVEGVDIKEARNTCLLFSPKDSSLSSGALAN
ILAIFKKHDINLVHIESRSSLRVPGYEFFVEADGKSGALGKAIEDVKEQC
SYFNIISRDYKDNATAVPWFPRRIRDLDRFANQILSYGSELDADHPGFTD
PEYRKRRKYFADIAYNYKHGEPLPHVDYTKEEIETWGIIFRNLTKLYKTH
ACREYNHVFPLLVDNCGFREDNIPQLEDVSNFLRDCTGFTLRPVAGLLSS
RDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDVCHELMGHVPLFADPAFAQ
FSQEIGLASLGAPDDYIEKLSTIFWFTVEYGVCRQEGELKAYGAGLLSSY
GELEYCLTDKPQLKDFEPEVTGVTKYPITQFQPLYYVADSFETAKEKTIK
FANSIPRPFGVRYNAYTQSVEVLDSKPQISNLMDNINSEFQILQNAVAKL
RV*

BS09727.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Hn-PC 452 CG7399-PC 1..452 1..452 2392 100 Plus
Hn-PA 452 CG7399-PA 1..452 1..452 2392 100 Plus
Hn-PB 447 CG7399-PB 5..447 10..452 2341 99.8 Plus
Trh-PA 555 CG9122-PA 90..508 46..450 1047 50.5 Plus
ple-PA 508 CG10118-PA 77..505 22..451 1022 47.1 Plus