Clone Sequence Records
BS09730.3prime Sequence
946 bp (872 high quality bases) assembled on 2006-04-19
> BS09730.3prime
ATGGTCTAGATAGCTTTTAGGTGGAGTAGTCGACTGCTCCGCTGCCGTTC
TGCTGCATGCGGACGGACCGACGACGGGTCAGGATGCGGCCCGGTGCCGC
CGGAGCACCTGGATCGCCGCCCTCAACTGGGACACCCACTTGCACTCCCG
TTTCCGGGATTATTCCCGTATTGCTGTTATTAACAGCCGCAGCGGCGGCA
GCAGCCTCTTCGCTCGCCATTCCGGCCACAGCGTTGTCCACGATCATGGG
GACGGCCACTGGTGTTGTCACTGGCTGATGATCCTCCTCCAGCTGGGAGT
TGCGACGCGTGGTAATGCCTCGCAGCTTGGACTTTTTGGGCGGCAGAGTA
CGTGGGGCGGTAACTTCCCTGATGGGCGGCGCTTCCTGGACGTTATTTCC
TACTGGGGTGGGAGTCGGCACCACCACTACCGTTGGAAGGGCTTCCTCCT
CTTGGTAGTTTCGTTTGCGGGCTAATCGCGCTGCATTTCCGTTCATATTG
CTGCCATCATCCGACAGTGGTATCTGTGGCACGGCCGCGATCTGTTCGTT
GTTGGTATTCCCATTGTAACAATCCGGATTCGTTGGGTTATTCGCCATGC
AAGCGTCCTCGTGAATGGTCTCTAGCTTATTTATCGTCGTGTTGGTGCCA
CCGTTGGTGGCAGCCGCTGGAGCCACAACCTCATCCTTGATGGCCTGTTT
CAACTGGGCGTTCTCCTTCTCAAGCGTTTGTATGCGATCGCGTGTGGTCT
TTAGTTCTTGCTGCAAAAACAGAATGGTGCTCTGCATGCCCTCCACATCC
TCGTCCAGCTCCTGCAGGAAGTCGTCCAACTCCGACTGCGATTTCTTGAC
CTCTTCGCTGAAGCTCTTCTGCATGGCCAGTTCGGTCTCCAGCTTGGGCA
GTCTGCCCGTGGAGGTCATCTTGCCCAGCTCCTCGTTCTCCTGATA
BS09730.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6315-PA | 1611 | fl(2)d-RA | 682..1611 | 946..17 | 4575 | 99.6 | Minus |
CG6315-PB | 1239 | fl(2)d-RB | 310..1239 | 946..17 | 4575 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fl(2)d-RD | 2485 | CG6315-RD | 1025..1954 | 946..17 | 4605 | 99.7 | Minus |
fl(2)d-RC | 2435 | CG6315-RC | 975..1904 | 946..17 | 4605 | 99.7 | Minus |
fl(2)d-RB | 2248 | CG6315-RB | 788..1717 | 946..17 | 4605 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13820155..13820970 | 17..832 | 4080 | 100 | Plus |
2R | 25286936 | 2R | 13821036..13821150 | 832..946 | 530 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:15:43 has no hits.
BS09730.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:20 Download gff for
BS09730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6315-PA | 683..1611 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:21 Download gff for
BS09730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6315-PB | 311..1239 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:34:17 Download gff for
BS09730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fl(2)d-RB | 789..1722 | 12..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:19 Download gff for
BS09730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fl(2)d-RB | 789..1722 | 12..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:19 Download gff for
BS09730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13820150..13820969 | 12..831 | 99 | <- | Plus |
2R | 13821036..13821149 | 832..945 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:34:17 Download gff for
BS09730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9707655..9708474 | 12..831 | 99 | <- | Plus |
arm_2R | 9708541..9708654 | 832..945 | 97 | | Plus |
BS09730.5prime Sequence
968 bp (775 high quality bases) assembled on 2006-04-19
> BS09730.5prime
GAAGTTATCAGTCGTCATGAGTGTCGCTGCAATGACTATGGACGATCAAA
GACCCTGTATGAACAGTTACGACAAAATGCCCCCGACCAAATACGAGCAA
AACCTAAATATCCTAAACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCC
CGCCTCCCCAACGCCCTCCGGCTTGGAGGACCACCATCATCATCACCATC
CACATCCGCACCATCATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACACTTGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATGCAGC
AGCTGTTGCAGAGGCTGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCG
AAGATGAGATCGAGAATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAA
TGCGCGGACGCCCAGCGACGCGAGAAGATCCTCATGCGACGGCTGGCCAA
CAAGGAGCAAGAATTCCAGGACTATGTGAGCCAAATTGCCGAGTACAAGG
CCCAACAGGCGCCAACTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCT
GCGGTCAATCTCCTGTTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAA
GGCCAAGCTGGAGGAGACCCAGAACGAGCTGTCCGCATGGAAGTTCACGC
CGGACTCTAATACCGGCAAACGCCTAATGGCCAAGTGCCGACTGCTCTAT
CAGGAGAACGAGGAGCTGGGCAAGATGACCTCCAACGGCAGACTGGCCAA
GCTGGAGACCGAACTGGCCATGCAGAAGAGCTTCAGCGAAGAGGTCAAGA
AATCGCAGTCGGAGTTGGACGACTTCCTGCANGAGCTGGACGAGGATGTG
GAGGGCATGCAGAGCACCATTCTGTTTTTGCAGCAAGAACTAAAGACCAC
ACGCGATCGCATACAAACGCTTGAGAAGGAGAACGCCCAGTTGAAACAGG
CCATCANGGATGAAGTTG
BS09730.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6315-PA | 1611 | fl(2)d-RA | 1..947 | 17..963 | 4672 | 99.6 | Plus |
CG6315-PB | 1239 | fl(2)d-RB | 1..575 | 389..963 | 2837 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fl(2)d-RA | 2567 | CG6315-RA | 426..1377 | 17..968 | 4708 | 99.6 | Plus |
fl(2)d-RD | 2485 | CG6315-RD | 680..1295 | 353..968 | 3043 | 99.5 | Plus |
fl(2)d-RC | 2435 | CG6315-RC | 630..1245 | 353..968 | 3043 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13821036..13821370 | 812..478 | 1675 | 100 | Minus |
2R | 25286936 | 2R | 13823792..13824128 | 353..17 | 1670 | 99.7 | Minus |
2R | 25286936 | 2R | 13820814..13820970 | 968..812 | 748 | 98.1 | Minus |
2R | 25286936 | 2R | 13821433..13821563 | 478..348 | 640 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:21:21 has no hits.
BS09730.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:21 Download gff for
BS09730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6315-PA | 1..952 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:22 Download gff for
BS09730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6315-PA | 1..952 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:37:05 Download gff for
BS09730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fl(2)d-RA | 426..1377 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:30 Download gff for
BS09730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fl(2)d-RA | 426..1377 | 17..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:30 Download gff for
BS09730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13820814..13820969 | 813..968 | 98 | <- | Minus |
2R | 13821036..13821369 | 479..812 | 100 | <- | Minus |
2R | 13821433..13821557 | 354..478 | 100 | <- | Minus |
2R | 13823792..13824128 | 17..353 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:37:05 Download gff for
BS09730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9708319..9708474 | 813..968 | 98 | <- | Minus |
arm_2R | 9708541..9708874 | 479..812 | 100 | <- | Minus |
arm_2R | 9708938..9709062 | 354..478 | 100 | <- | Minus |
arm_2R | 9711297..9711633 | 17..353 | 99 | | Minus |
BS09730.complete Sequence
1643 bp assembled on 2008-08-15
GenBank Submission: FJ636472
> BS09730.complete
GAAGTTATCAGTCGTCATGAGTGTCGCTGCAATGACTATGGACGATCAAA
GACCCTGTATGAACAGTTACGACAAAATGCCCCCGACCAAATACGAGCAA
AACCTAAATATCCTAAACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCC
CGCCTCCCCAACGCCCTCCGGCTTGGAGGACCACCATCATCATCACCATC
CACATCCGCACCATCATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACACTTGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATGCAGC
AGCTGTTGCAGAGGCTGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCG
AAGATGAGATCGAGAATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAA
TGCGCGGACGCCCAGCGACGCGAGAAGATCCTCATGCGACGGCTGGCCAA
CAAGGAGCAAGAATTCCAGGACTATGTGAGCCAAATTGCCGAGTACAAGG
CCCAACAGGCGCCAACTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCT
GCGGTCAATCTCCTGTTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAA
GGCCAAGCTGGAGGAGACCCAGAACGAGCTGTCCGCATGGAAGTTCACGC
CGGACTCTAATACCGGCAAACGCCTAATGGCCAAGTGCCGACTGCTCTAT
CAGGAGAACGAGGAGCTGGGCAAGATGACCTCCAACGGCAGACTGGCCAA
GCTGGAGACCGAACTGGCCATGCAGAAGAGCTTCAGCGAAGAGGTCAAGA
AATCGCAGTCGGAGTTGGACGACTTCCTGCAGGAGCTGGACGAGGATGTG
GAGGGCATGCAGAGCACCATTCTGTTTTTGCAGCAAGAACTAAAGACCAC
ACGCGATCGCATACAAACGCTTGAGAAGGAGAACGCCCAGTTGAAACAGG
CCATCAAGGATGAGGTTGTGGCTCCAGCGGCTGCCACCAACGGTGGCACC
AACACGACGATAAATAAGCTAGAGACCATTCACGAGGACGCTTGCATGGC
GAATAACCCAACGAATCCGGATTGTTACAATGGGAATACCAACAACGAAC
AGATCGCGGCCGTGCCACAGATACCACTGTCGGATGATGGCAGCAATATG
AACGGAAATGCAGCGCGATTAGCCCGCAAACGAAACTACCAAGAGGAGGA
AGCCCTTCCAACGGTAGTGGTGGTGCCGACTCCCACCCCAGTAGGAAATA
ACGTCCAGGAAGCGCCGCCCATCAGGGAAGTTACCGCCCCACGTACTCTG
CCGCCCAAAAAGTCCAAGCTGCGAGGCATTACCACGCGTCGCAACTCCCA
GCTGGAGGAGGATCATCAGCCAGTGACAACACCAGTGGCCGTCCCCATGA
TCGTGGACAACGCTGTGGCCGGAATGGCGAGCGAAGAGGCTGCTGCCGCC
GCTGCGGCTGTTAATAACAGCAATACGGGAATAATCCCGGAAACGGGAGT
GCAAGTGGGTGTCCCAGTTGAGGGCGGCGATCCAGGTGCTCCGGCGGCAC
CGGGCCGCATCCTGACCCGTCGTCGGTCCGTCCGCATGCAGCAGAACGGC
AGCGGAGCAGTCGACTACTCCACCTAAAAGCTATCTAGACCAT
BS09730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fl(2)d-RA | 1611 | CG6315-PA | 1..1611 | 17..1627 | 8040 | 99.9 | Plus |
fl(2)d-RD | 1239 | CG6315-PD | 1..1239 | 389..1627 | 6195 | 100 | Plus |
fl(2)d-RC | 1239 | CG6315-PC | 1..1239 | 389..1627 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fl(2)d-RA | 2567 | CG6315-RA | 426..2036 | 17..1627 | 8040 | 99.9 | Plus |
fl(2)d-RD | 2485 | CG6315-RD | 680..1954 | 353..1627 | 6375 | 100 | Plus |
fl(2)d-RC | 2435 | CG6315-RC | 630..1904 | 353..1627 | 6375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13820155..13820970 | 1627..812 | 4080 | 100 | Minus |
2R | 25286936 | 2R | 13821036..13821370 | 812..478 | 1675 | 100 | Minus |
2R | 25286936 | 2R | 13823792..13824128 | 353..17 | 1670 | 99.7 | Minus |
2R | 25286936 | 2R | 13821433..13821563 | 478..348 | 640 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:57 has no hits.
BS09730.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:35 Download gff for
BS09730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fl(2)d-RA | 427..2042 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:27 Download gff for
BS09730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fl(2)d-RA | 426..2034 | 17..1625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:00 Download gff for
BS09730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fl(2)d-RA | 427..2035 | 17..1625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:39 Download gff for
BS09730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fl(2)d-RA | 426..2034 | 17..1625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:39 Download gff for
BS09730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13820157..13820969 | 813..1625 | 100 | <- | Minus |
2R | 13821036..13821369 | 479..812 | 100 | <- | Minus |
2R | 13821433..13821557 | 354..478 | 100 | <- | Minus |
2R | 13823792..13824128 | 17..353 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:27 Download gff for
BS09730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9707662..9708474 | 813..1625 | 100 | <- | Minus |
arm_2R | 9708541..9708874 | 479..812 | 100 | <- | Minus |
arm_2R | 9708938..9709062 | 354..478 | 100 | <- | Minus |
arm_2R | 9711297..9711633 | 17..353 | 99 | | Minus |
BS09730.pep Sequence
Translation from 16 to 1626
> BS09730.pep
MSVAAMTMDDQRPCMNSYDKMPPTKYEQNLNILNSSQNSGATGGPASPTP
SGLEDHHHHHHPHPHHHHHQEQQQQQQQQQHLQQQQQQQQQQHAAAVAEA
VAAAEQRQRLLEDEIENLKLEQVRMAQQCADAQRREKILMRRLANKEQEF
QDYVSQIAEYKAQQAPTALALRTALLDPAVNLLFERLKKELKATKAKLEE
TQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGKMTSNGRLAKLETEL
AMQKSFSEEVKKSQSELDDFLQELDEDVEGMQSTILFLQQELKTTRDRIQ
TLEKENAQLKQAIKDEVVAPAAATNGGTNTTINKLETIHEDACMANNPTN
PDCYNGNTNNEQIAAVPQIPLSDDGSNMNGNAARLARKRNYQEEEALPTV
VVVPTPTPVGNNVQEAPPIREVTAPRTLPPKKSKLRGITTRRNSQLEEDH
QPVTTPVAVPMIVDNAVAGMASEEAAAAAAAVNNSNTGIIPETGVQVGVP
VEGGDPGAPAAPGRILTRRRSVRMQQNGSGAVDYST*
BS09730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fl(2)d-PA | 536 | CG6315-PA | 1..536 | 1..536 | 2750 | 100 | Plus |
fl(2)d-PD | 412 | CG6315-PD | 1..412 | 125..536 | 2082 | 100 | Plus |
fl(2)d-PC | 412 | CG6315-PC | 1..412 | 125..536 | 2082 | 100 | Plus |
fl(2)d-PB | 412 | CG6315-PB | 1..412 | 125..536 | 2082 | 100 | Plus |
ssp6-PB | 866 | CG6619-PB | 519..565 | 46..92 | 176 | 68.1 | Plus |