Clone BS09730 Report

Search the DGRC for BS09730

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptfl(2)d-RA
Protein status:BS09730.pep: full length peptide match
Sequenced Size:1643

Clone Sequence Records

BS09730.3prime Sequence

946 bp (872 high quality bases) assembled on 2006-04-19

> BS09730.3prime
ATGGTCTAGATAGCTTTTAGGTGGAGTAGTCGACTGCTCCGCTGCCGTTC
TGCTGCATGCGGACGGACCGACGACGGGTCAGGATGCGGCCCGGTGCCGC
CGGAGCACCTGGATCGCCGCCCTCAACTGGGACACCCACTTGCACTCCCG
TTTCCGGGATTATTCCCGTATTGCTGTTATTAACAGCCGCAGCGGCGGCA
GCAGCCTCTTCGCTCGCCATTCCGGCCACAGCGTTGTCCACGATCATGGG
GACGGCCACTGGTGTTGTCACTGGCTGATGATCCTCCTCCAGCTGGGAGT
TGCGACGCGTGGTAATGCCTCGCAGCTTGGACTTTTTGGGCGGCAGAGTA
CGTGGGGCGGTAACTTCCCTGATGGGCGGCGCTTCCTGGACGTTATTTCC
TACTGGGGTGGGAGTCGGCACCACCACTACCGTTGGAAGGGCTTCCTCCT
CTTGGTAGTTTCGTTTGCGGGCTAATCGCGCTGCATTTCCGTTCATATTG
CTGCCATCATCCGACAGTGGTATCTGTGGCACGGCCGCGATCTGTTCGTT
GTTGGTATTCCCATTGTAACAATCCGGATTCGTTGGGTTATTCGCCATGC
AAGCGTCCTCGTGAATGGTCTCTAGCTTATTTATCGTCGTGTTGGTGCCA
CCGTTGGTGGCAGCCGCTGGAGCCACAACCTCATCCTTGATGGCCTGTTT
CAACTGGGCGTTCTCCTTCTCAAGCGTTTGTATGCGATCGCGTGTGGTCT
TTAGTTCTTGCTGCAAAAACAGAATGGTGCTCTGCATGCCCTCCACATCC
TCGTCCAGCTCCTGCAGGAAGTCGTCCAACTCCGACTGCGATTTCTTGAC
CTCTTCGCTGAAGCTCTTCTGCATGGCCAGTTCGGTCTCCAGCTTGGGCA
GTCTGCCCGTGGAGGTCATCTTGCCCAGCTCCTCGTTCTCCTGATA

BS09730.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6315-PA 1611 fl(2)d-RA 682..1611 946..17 4575 99.6 Minus
CG6315-PB 1239 fl(2)d-RB 310..1239 946..17 4575 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
fl(2)d-RD 2485 CG6315-RD 1025..1954 946..17 4605 99.7 Minus
fl(2)d-RC 2435 CG6315-RC 975..1904 946..17 4605 99.7 Minus
fl(2)d-RB 2248 CG6315-RB 788..1717 946..17 4605 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13820155..13820970 17..832 4080 100 Plus
2R 25286936 2R 13821036..13821150 832..946 530 97.4 Plus
Blast to na_te.dros performed on 2015-01-30 17:15:43 has no hits.

BS09730.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:20 Download gff for BS09730.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6315-PA 683..1611 17..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:21 Download gff for BS09730.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6315-PB 311..1239 17..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:34:17 Download gff for BS09730.3prime
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RB 789..1722 12..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:19 Download gff for BS09730.3prime
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RB 789..1722 12..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:19 Download gff for BS09730.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13820150..13820969 12..831 99 <- Plus
2R 13821036..13821149 832..945 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:34:17 Download gff for BS09730.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9707655..9708474 12..831 99 <- Plus
arm_2R 9708541..9708654 832..945 97   Plus

BS09730.5prime Sequence

968 bp (775 high quality bases) assembled on 2006-04-19

> BS09730.5prime
GAAGTTATCAGTCGTCATGAGTGTCGCTGCAATGACTATGGACGATCAAA
GACCCTGTATGAACAGTTACGACAAAATGCCCCCGACCAAATACGAGCAA
AACCTAAATATCCTAAACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCC
CGCCTCCCCAACGCCCTCCGGCTTGGAGGACCACCATCATCATCACCATC
CACATCCGCACCATCATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACACTTGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATGCAGC
AGCTGTTGCAGAGGCTGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCG
AAGATGAGATCGAGAATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAA
TGCGCGGACGCCCAGCGACGCGAGAAGATCCTCATGCGACGGCTGGCCAA
CAAGGAGCAAGAATTCCAGGACTATGTGAGCCAAATTGCCGAGTACAAGG
CCCAACAGGCGCCAACTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCT
GCGGTCAATCTCCTGTTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAA
GGCCAAGCTGGAGGAGACCCAGAACGAGCTGTCCGCATGGAAGTTCACGC
CGGACTCTAATACCGGCAAACGCCTAATGGCCAAGTGCCGACTGCTCTAT
CAGGAGAACGAGGAGCTGGGCAAGATGACCTCCAACGGCAGACTGGCCAA
GCTGGAGACCGAACTGGCCATGCAGAAGAGCTTCAGCGAAGAGGTCAAGA
AATCGCAGTCGGAGTTGGACGACTTCCTGCANGAGCTGGACGAGGATGTG
GAGGGCATGCAGAGCACCATTCTGTTTTTGCAGCAAGAACTAAAGACCAC
ACGCGATCGCATACAAACGCTTGAGAAGGAGAACGCCCAGTTGAAACAGG
CCATCANGGATGAAGTTG

BS09730.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6315-PA 1611 fl(2)d-RA 1..947 17..963 4672 99.6 Plus
CG6315-PB 1239 fl(2)d-RB 1..575 389..963 2837 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
fl(2)d-RA 2567 CG6315-RA 426..1377 17..968 4708 99.6 Plus
fl(2)d-RD 2485 CG6315-RD 680..1295 353..968 3043 99.5 Plus
fl(2)d-RC 2435 CG6315-RC 630..1245 353..968 3043 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13821036..13821370 812..478 1675 100 Minus
2R 25286936 2R 13823792..13824128 353..17 1670 99.7 Minus
2R 25286936 2R 13820814..13820970 968..812 748 98.1 Minus
2R 25286936 2R 13821433..13821563 478..348 640 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 14:21:21 has no hits.

BS09730.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:21 Download gff for BS09730.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6315-PA 1..952 17..968 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:22 Download gff for BS09730.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6315-PA 1..952 17..968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:37:05 Download gff for BS09730.5prime
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 426..1377 17..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:30 Download gff for BS09730.5prime
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 426..1377 17..968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:30 Download gff for BS09730.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13820814..13820969 813..968 98 <- Minus
2R 13821036..13821369 479..812 100 <- Minus
2R 13821433..13821557 354..478 100 <- Minus
2R 13823792..13824128 17..353 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:37:05 Download gff for BS09730.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9708319..9708474 813..968 98 <- Minus
arm_2R 9708541..9708874 479..812 100 <- Minus
arm_2R 9708938..9709062 354..478 100 <- Minus
arm_2R 9711297..9711633 17..353 99   Minus

BS09730.complete Sequence

1643 bp assembled on 2008-08-15

GenBank Submission: FJ636472

> BS09730.complete
GAAGTTATCAGTCGTCATGAGTGTCGCTGCAATGACTATGGACGATCAAA
GACCCTGTATGAACAGTTACGACAAAATGCCCCCGACCAAATACGAGCAA
AACCTAAATATCCTAAACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCC
CGCCTCCCCAACGCCCTCCGGCTTGGAGGACCACCATCATCATCACCATC
CACATCCGCACCATCATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACACTTGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATGCAGC
AGCTGTTGCAGAGGCTGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCG
AAGATGAGATCGAGAATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAA
TGCGCGGACGCCCAGCGACGCGAGAAGATCCTCATGCGACGGCTGGCCAA
CAAGGAGCAAGAATTCCAGGACTATGTGAGCCAAATTGCCGAGTACAAGG
CCCAACAGGCGCCAACTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCT
GCGGTCAATCTCCTGTTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAA
GGCCAAGCTGGAGGAGACCCAGAACGAGCTGTCCGCATGGAAGTTCACGC
CGGACTCTAATACCGGCAAACGCCTAATGGCCAAGTGCCGACTGCTCTAT
CAGGAGAACGAGGAGCTGGGCAAGATGACCTCCAACGGCAGACTGGCCAA
GCTGGAGACCGAACTGGCCATGCAGAAGAGCTTCAGCGAAGAGGTCAAGA
AATCGCAGTCGGAGTTGGACGACTTCCTGCAGGAGCTGGACGAGGATGTG
GAGGGCATGCAGAGCACCATTCTGTTTTTGCAGCAAGAACTAAAGACCAC
ACGCGATCGCATACAAACGCTTGAGAAGGAGAACGCCCAGTTGAAACAGG
CCATCAAGGATGAGGTTGTGGCTCCAGCGGCTGCCACCAACGGTGGCACC
AACACGACGATAAATAAGCTAGAGACCATTCACGAGGACGCTTGCATGGC
GAATAACCCAACGAATCCGGATTGTTACAATGGGAATACCAACAACGAAC
AGATCGCGGCCGTGCCACAGATACCACTGTCGGATGATGGCAGCAATATG
AACGGAAATGCAGCGCGATTAGCCCGCAAACGAAACTACCAAGAGGAGGA
AGCCCTTCCAACGGTAGTGGTGGTGCCGACTCCCACCCCAGTAGGAAATA
ACGTCCAGGAAGCGCCGCCCATCAGGGAAGTTACCGCCCCACGTACTCTG
CCGCCCAAAAAGTCCAAGCTGCGAGGCATTACCACGCGTCGCAACTCCCA
GCTGGAGGAGGATCATCAGCCAGTGACAACACCAGTGGCCGTCCCCATGA
TCGTGGACAACGCTGTGGCCGGAATGGCGAGCGAAGAGGCTGCTGCCGCC
GCTGCGGCTGTTAATAACAGCAATACGGGAATAATCCCGGAAACGGGAGT
GCAAGTGGGTGTCCCAGTTGAGGGCGGCGATCCAGGTGCTCCGGCGGCAC
CGGGCCGCATCCTGACCCGTCGTCGGTCCGTCCGCATGCAGCAGAACGGC
AGCGGAGCAGTCGACTACTCCACCTAAAAGCTATCTAGACCAT

BS09730.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
fl(2)d-RA 1611 CG6315-PA 1..1611 17..1627 8040 99.9 Plus
fl(2)d-RD 1239 CG6315-PD 1..1239 389..1627 6195 100 Plus
fl(2)d-RC 1239 CG6315-PC 1..1239 389..1627 6195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
fl(2)d-RA 2567 CG6315-RA 426..2036 17..1627 8040 99.9 Plus
fl(2)d-RD 2485 CG6315-RD 680..1954 353..1627 6375 100 Plus
fl(2)d-RC 2435 CG6315-RC 630..1904 353..1627 6375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13820155..13820970 1627..812 4080 100 Minus
2R 25286936 2R 13821036..13821370 812..478 1675 100 Minus
2R 25286936 2R 13823792..13824128 353..17 1670 99.7 Minus
2R 25286936 2R 13821433..13821563 478..348 640 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:28:57 has no hits.

BS09730.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:35 Download gff for BS09730.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 427..2042 17..1632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:27 Download gff for BS09730.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 426..2034 17..1625 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:00 Download gff for BS09730.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 427..2035 17..1625 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:39 Download gff for BS09730.complete
Subject Subject Range Query Range Percent Splice Strand
fl(2)d-RA 426..2034 17..1625 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:39 Download gff for BS09730.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13820157..13820969 813..1625 100 <- Minus
2R 13821036..13821369 479..812 100 <- Minus
2R 13821433..13821557 354..478 100 <- Minus
2R 13823792..13824128 17..353 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:27 Download gff for BS09730.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9707662..9708474 813..1625 100 <- Minus
arm_2R 9708541..9708874 479..812 100 <- Minus
arm_2R 9708938..9709062 354..478 100 <- Minus
arm_2R 9711297..9711633 17..353 99   Minus

BS09730.pep Sequence

Translation from 16 to 1626

> BS09730.pep
MSVAAMTMDDQRPCMNSYDKMPPTKYEQNLNILNSSQNSGATGGPASPTP
SGLEDHHHHHHPHPHHHHHQEQQQQQQQQQHLQQQQQQQQQQHAAAVAEA
VAAAEQRQRLLEDEIENLKLEQVRMAQQCADAQRREKILMRRLANKEQEF
QDYVSQIAEYKAQQAPTALALRTALLDPAVNLLFERLKKELKATKAKLEE
TQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGKMTSNGRLAKLETEL
AMQKSFSEEVKKSQSELDDFLQELDEDVEGMQSTILFLQQELKTTRDRIQ
TLEKENAQLKQAIKDEVVAPAAATNGGTNTTINKLETIHEDACMANNPTN
PDCYNGNTNNEQIAAVPQIPLSDDGSNMNGNAARLARKRNYQEEEALPTV
VVVPTPTPVGNNVQEAPPIREVTAPRTLPPKKSKLRGITTRRNSQLEEDH
QPVTTPVAVPMIVDNAVAGMASEEAAAAAAAVNNSNTGIIPETGVQVGVP
VEGGDPGAPAAPGRILTRRRSVRMQQNGSGAVDYST*

BS09730.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
fl(2)d-PA 536 CG6315-PA 1..536 1..536 2750 100 Plus
fl(2)d-PD 412 CG6315-PD 1..412 125..536 2082 100 Plus
fl(2)d-PC 412 CG6315-PC 1..412 125..536 2082 100 Plus
fl(2)d-PB 412 CG6315-PB 1..412 125..536 2082 100 Plus
ssp6-PB 866 CG6619-PB 519..565 46..92 176 68.1 Plus