Clone BS09732 Report

Search the DGRC for BS09732

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG4452-RA
Protein status:BS09732.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09732.3prime Sequence

936 bp (852 high quality bases) assembled on 2006-04-19

> BS09732.3prime
ATGGTCTAGAAAGCTTTCAGTTGGACGAGGGCGTGGGGCTGCTGGAGGCG
GATCGTGACCGCACACTAGCCCTATCCCCCTGCTCGCTGCGTTCCTCGTC
TCGATCGCGACTCTTTTCGTCCTTGTCCAGATCGGCGGGCTCCGACGAGG
CCTTGGTCGGTTTTTCCGGCCCCGTTGTCGCCAGAATTTCCTCCTTGGGC
GATAAGTTCTCACGTTTGATGATCTCCTTTTCTGCCTTGCTAATGGCAGC
GGTCTTTTTGTTGCTGCTCTTCTTAAGCACGGCCAGCTCCTTGAGCACAC
TGGCGATCTTGCGGTTCAAGTTGTCCACCTTCATGTCGTGCAGACGCTCC
ACTTCCTTCAGCCGGTTGCGCATGTCGTTCTCCTTCTCGAAGTTTTTGCC
CTTCAGTTCGGTCAGCTGCTTGTCTTTTTCGAGCAGCTCTTTGTCTTTTT
GATTCAGGCGCTTCTCCAGACTGGCGATGCGTTCCTTTAGGTATGTTATA
GCAACCACATGATCAGACGAATTGGTGTCCACGGTGATGGCAGCAGGCGC
TGCAATGGTCCCATTACCACCATTTCCGCGTGAGATCTTATCAGGTAGAT
CCAATCCAGCTCCGCTTACGGCATTCACGCCGCTATTATTGGCACCGCTG
CCGCTCTTGCCCAGCTCGTTGCGCGATGGCTTCTTGGCCGCAGCGCTGTC
TCTGTGCGAGGACGAGGTCTTCTCGTGTGGCCTCTTCTTGGACATCGGTA
TACGGCCCTCCTGCTGTGCCTTGAGTAGAGCTCGCTTGTANGCGCAGGCA
CACAGCCAGCAAAGCAATTTGCCATTGACCTTTTTGTTCTCGTCGCGCCT
GTCAAAGGCTGATCGCAGCTTGCATTCATCGCACTGCACCGGCGGTCCGT
ACTTTGCCTCGTAGCTGGCGCATCGCATGCACTTGG

BS09732.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-PA 1173 CG4452-RA 254..1173 936..17 4581 99.8 Minus
CG4452-PB 963 CG4452-RB 150..963 830..17 4051 99.8 Minus
CG4452-PC 963 CG4452-RC 150..963 830..17 4051 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-RA 1670 CG4452-RA 402..1321 936..17 4589 99.9 Minus
CG4452-RE 1583 CG4452-RE 414..1227 830..17 4059 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9368899..9369314 831..416 2069 99.8 Minus
3L 28110227 3L 9369543..9369944 418..17 2010 100 Minus
3L 28110227 3L 9368567..9368665 924..826 495 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:02:00 has no hits.

BS09732.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:24 Download gff for BS09732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4452-PA 254..1173 17..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:26 Download gff for BS09732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4452-PA 254..1173 17..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:39:50 Download gff for BS09732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 402..1324 14..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:37 Download gff for BS09732.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 402..1324 14..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:37 Download gff for BS09732.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9368568..9368661 830..923 100 -> Minus
3L 9368901..9369314 416..829 99 -> Minus
3L 9369546..9369947 14..415 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:50 Download gff for BS09732.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9361668..9361761 830..923 100 -> Minus
arm_3L 9362001..9362414 416..829 99 -> Minus
arm_3L 9362646..9363047 14..415 99   Minus

BS09732.5prime Sequence

874 bp (817 high quality bases) assembled on 2006-04-19

> BS09732.5prime
GAAGTTATCAGTCGACATGAGTGGAAAAGTTTTATTCGCCTGCTCCAAGT
GTTTCTCGCGCCATCTGTACGAGGAGCTCTCCTCCGGCCAGCAACTATGC
AAGGGCTGCCGCGGCTCTACCTCAGTTGGTAAATGTACTTACTGCCGTTC
GGAGTTTCAACCCGCCACCAAATCACAGAGTGCCTGCAAGAAGTGCGAAC
ATTATCTGGGGAAGTACGGCAAACCCAGTGCCTGCGAGTGCTGCAAGATT
GTGGCCGCCTTCGGAGGATCCAAGTGCATGCGATGCGCCAGCTACGAGGC
AAAGTACGGACCGCCGGTGCAGTGCGATGAATGCAAGCTGCGATCAGCCT
TTGACAGGCGCGACGAGAACAAAAAGGTCAATGGCAAATTGCTTTGCTGG
CTGTGTGCCTGCGCCTACAAGCGAGCTCTACTCAAGGCACAGCAGGAGGG
CCGTATACCGATGTCCAAGAAGAGGCCACACGAGAAGACCTCGTCCTCGC
ACAGAGACAGCGCTGCGGCCAAGAAGCCATCGCGCAACGAGCTGGGCAAG
AGCGGCAGCGGTGCCAATAATAGCGGCGTGAATGCCGTAAGCGGAGCTGG
ATTGGATCTACCTGATAAGATCTCACGCGGAAATGGTGGTAATGGGACCA
TTGCAGCGCCTGCTGCCATCACCGTGGACACCAATTCGTCTGATCATGTG
GTTGCTATAACATACCTAAAGGAACGCATCGCCAGTCTGGAGAAGCGCCT
GAATCAAAAAGACAAAGAGCTGCTCGAAAAAGACAAGCAGCTGACCGAAC
TGAAGGGCAAAAACTTCGAGAAGGAGAACGACATGCGCAACCGGCTGAAG
GAAGTGGAGCGTCTGCACGACATG

BS09732.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-PA 1173 CG4452-RA 1..858 17..874 4290 100 Plus
CG4452-PB 963 CG4452-RB 150..648 376..874 2495 100 Plus
CG4452-PC 963 CG4452-RC 150..648 376..874 2495 100 Plus
CG4452-PB 963 CG4452-RB 1..150 133..282 750 100 Plus
CG4452-PC 963 CG4452-RC 1..150 133..282 750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-RA 1670 CG4452-RA 149..1006 17..874 4290 100 Plus
CG4452-RE 1583 CG4452-RE 414..912 376..874 2495 100 Plus
CG4452-RE 1583 CG4452-RE 149..414 17..282 1330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9368899..9369314 375..790 2080 100 Plus
3L 28110227 3L 9368101..9368214 169..282 570 100 Plus
3L 28110227 3L 9368567..9368665 282..380 495 100 Plus
3L 28110227 3L 9367525..9367612 17..104 440 100 Plus
3L 28110227 3L 9369543..9369629 788..874 435 100 Plus
3L 28110227 3L 9367947..9368013 102..168 335 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:52:00 has no hits.

BS09732.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:25 Download gff for BS09732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4452-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:28 Download gff for BS09732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4452-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:56:15 Download gff for BS09732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 141..1006 9..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:13 Download gff for BS09732.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 141..1006 9..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:13 Download gff for BS09732.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9367517..9367611 9..103 95 -> Plus
3L 9367949..9368013 104..168 100 -> Plus
3L 9368101..9368214 169..282 100 -> Plus
3L 9368568..9368661 283..376 100 -> Plus
3L 9368901..9369314 377..790 100 -> Plus
3L 9369546..9369629 791..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:56:15 Download gff for BS09732.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9360617..9360711 9..103 95 -> Plus
arm_3L 9361049..9361113 104..168 100 -> Plus
arm_3L 9361201..9361314 169..282 100 -> Plus
arm_3L 9361668..9361761 283..376 100 -> Plus
arm_3L 9362001..9362414 377..790 100 -> Plus
arm_3L 9362646..9362729 791..874 100   Plus

BS09732.complete Sequence

1205 bp (1205 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636473

> BS09732.complete
GAAGTTATCAGTCGACATGAGTGGAAAAGTTTTATTCGCCTGCTCCAAGT
GTTTCTCGCGCCATCTGTACGAGGAGCTCTCCTCCGGCCAGCAACTATGC
AAGGGCTGCCGCGGCTCTACCTCAGTTGGTAAATGTACTTACTGCCGTTC
GGAGTTTCAACCCGCCACCAAATCACAGAGTGCCTGCAAGAAGTGCGAAC
ATTATCTGGGGAAGTACGGCAAACCCAGTGCCTGCGAGTGCTGCAAGATT
GTGGCCGCCTTCGGAGGATCCAAGTGCATGCGATGCGCCAGCTACGAGGC
AAAGTACGGACCGCCGGTGCAGTGCGATGAATGCAAGCTGCGATCAGCCT
TTGACAGGCGCGACGAGAACAAAAAGGTCAATGGCAAATTGCTTTGCTGG
CTGTGTGCCTGCGCCTACAAGCGAGCTCTACTCAAGGCACAGCAGGAGGG
CCGTATACCGATGTCCAAGAAGAGGCCACACGAGAAGACCTCGTCCTCGC
ACAGAGACAGCGCTGCGGCCAAGAAGCCATCGCGCAACGAGCTGGGCAAG
AGCGGCAGCGGTGCCAATAATAGCGGCGTGAATGCCGTAAGCGGAGCTGG
ATTGGATCTACCTGATAAGATCTCACGCGGAAATGGTGGTAATGGGACCA
TTGCAGCGCCTGCTGCCATCACCGTGGACACCAATTCGTCTGATCATGTG
GTTGCTATAACATACCTAAAGGAACGCATCGCCAGTCTGGAGAAGCGCCT
GAATCAAAAAGACAAAGAGCTGCTCGAAAAAGACAAGCAGCTGACCGAAC
TGAAGGGCAAAAACTTCGAGAAGGAGAACGACATGCGCAACCGGCTGAAG
GAAGTGGAGCGTCTGCACGACATGAAGGTGGACAACTTGAACCGCAAGAT
CGCCAGTGTGCTCAAGGAGCTGGCCGTGCTTAAGAAGAGCAGCAACAAAA
AGACCGCTGCCATTAGCAAGGCAGAAAAGGAGATCATCAAACGTGAGAAC
TTATCGCCCAAGGAGGAAATTCTGGCGACAACGGGGCCGGAAAAACCGAC
CAAGGCCTCGTCGGAGCCCGCCGATCTGGACAAGGACGAAAAGAGTCGCG
ATCGAGACGAGGAACGCAGCGAGCAGGGGGATAGGGCTAGTGTGCGGTCA
CGATCCGCCTCCAGCAGCCCCACGCCCTCGTCCAACTGAAAGCTTTCTAG
ACCAT

BS09732.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-RA 1173 CG4452-PA 1..1173 17..1189 5865 100 Plus
CG4452-RE 471 CG4452-PE 1..266 17..282 1330 100 Plus
CG4452-RE 471 CG4452-PE 266..471 376..581 1030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-RA 1670 CG4452-RA 149..1321 17..1189 5865 100 Plus
CG4452-RE 1583 CG4452-RE 414..1227 376..1189 4070 100 Plus
CG4452-RE 1583 CG4452-RE 149..414 17..282 1330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9368899..9369314 375..790 2080 100 Plus
3L 28110227 3L 9369543..9369944 788..1189 2010 100 Plus
3L 28110227 3L 9368101..9368214 169..282 570 100 Plus
3L 28110227 3L 9368567..9368665 282..380 495 100 Plus
3L 28110227 3L 9367525..9367612 17..104 440 100 Plus
3L 28110227 3L 9367947..9368013 102..168 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:23:25 has no hits.

BS09732.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:29 Download gff for BS09732.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 1..1173 17..1189 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:29 Download gff for BS09732.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 192..1375 9..1192 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:24 Download gff for BS09732.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 149..1320 17..1188 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:29 Download gff for BS09732.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 192..1375 9..1192 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:51 Download gff for BS09732.complete
Subject Subject Range Query Range Percent Splice Strand
CG4452-RA 149..1320 17..1188 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:51 Download gff for BS09732.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9367525..9367611 17..103 100 -> Plus
3L 9367949..9368013 104..168 100 -> Plus
3L 9368101..9368214 169..282 100 -> Plus
3L 9368568..9368661 283..376 100 -> Plus
3L 9368901..9369314 377..790 100 -> Plus
3L 9369546..9369943 791..1188 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:24 Download gff for BS09732.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9360625..9360711 17..103 100 -> Plus
arm_3L 9361049..9361113 104..168 100 -> Plus
arm_3L 9361201..9361314 169..282 100 -> Plus
arm_3L 9361668..9361761 283..376 100 -> Plus
arm_3L 9362001..9362414 377..790 100 -> Plus
arm_3L 9362646..9363043 791..1188 100   Plus

BS09732.pep Sequence

Translation from 16 to 1188

> BS09732.pep
MSGKVLFACSKCFSRHLYEELSSGQQLCKGCRGSTSVGKCTYCRSEFQPA
TKSQSACKKCEHYLGKYGKPSACECCKIVAAFGGSKCMRCASYEAKYGPP
VQCDECKLRSAFDRRDENKKVNGKLLCWLCACAYKRALLKAQQEGRIPMS
KKRPHEKTSSSHRDSAAAKKPSRNELGKSGSGANNSGVNAVSGAGLDLPD
KISRGNGGNGTIAAPAAITVDTNSSDHVVAITYLKERIASLEKRLNQKDK
ELLEKDKQLTELKGKNFEKENDMRNRLKEVERLHDMKVDNLNRKIASVLK
ELAVLKKSSNKKTAAISKAEKEIIKRENLSPKEEILATTGPEKPTKASSE
PADLDKDEKSRDRDEERSEQGDRASVRSRSASSSPTPSSN*

BS09732.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4452-PA 390 CG4452-PA 1..390 1..390 2023 100 Plus
CG4452-PE 156 CG4452-PE 1..89 1..89 497 100 Plus