Clone Sequence Records
BS09732.3prime Sequence
936 bp (852 high quality bases) assembled on 2006-04-19
> BS09732.3prime
ATGGTCTAGAAAGCTTTCAGTTGGACGAGGGCGTGGGGCTGCTGGAGGCG
GATCGTGACCGCACACTAGCCCTATCCCCCTGCTCGCTGCGTTCCTCGTC
TCGATCGCGACTCTTTTCGTCCTTGTCCAGATCGGCGGGCTCCGACGAGG
CCTTGGTCGGTTTTTCCGGCCCCGTTGTCGCCAGAATTTCCTCCTTGGGC
GATAAGTTCTCACGTTTGATGATCTCCTTTTCTGCCTTGCTAATGGCAGC
GGTCTTTTTGTTGCTGCTCTTCTTAAGCACGGCCAGCTCCTTGAGCACAC
TGGCGATCTTGCGGTTCAAGTTGTCCACCTTCATGTCGTGCAGACGCTCC
ACTTCCTTCAGCCGGTTGCGCATGTCGTTCTCCTTCTCGAAGTTTTTGCC
CTTCAGTTCGGTCAGCTGCTTGTCTTTTTCGAGCAGCTCTTTGTCTTTTT
GATTCAGGCGCTTCTCCAGACTGGCGATGCGTTCCTTTAGGTATGTTATA
GCAACCACATGATCAGACGAATTGGTGTCCACGGTGATGGCAGCAGGCGC
TGCAATGGTCCCATTACCACCATTTCCGCGTGAGATCTTATCAGGTAGAT
CCAATCCAGCTCCGCTTACGGCATTCACGCCGCTATTATTGGCACCGCTG
CCGCTCTTGCCCAGCTCGTTGCGCGATGGCTTCTTGGCCGCAGCGCTGTC
TCTGTGCGAGGACGAGGTCTTCTCGTGTGGCCTCTTCTTGGACATCGGTA
TACGGCCCTCCTGCTGTGCCTTGAGTAGAGCTCGCTTGTANGCGCAGGCA
CACAGCCAGCAAAGCAATTTGCCATTGACCTTTTTGTTCTCGTCGCGCCT
GTCAAAGGCTGATCGCAGCTTGCATTCATCGCACTGCACCGGCGGTCCGT
ACTTTGCCTCGTAGCTGGCGCATCGCATGCACTTGG
BS09732.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4452-PA | 1173 | CG4452-RA | 254..1173 | 936..17 | 4581 | 99.8 | Minus |
CG4452-PB | 963 | CG4452-RB | 150..963 | 830..17 | 4051 | 99.8 | Minus |
CG4452-PC | 963 | CG4452-RC | 150..963 | 830..17 | 4051 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4452-RA | 1670 | CG4452-RA | 402..1321 | 936..17 | 4589 | 99.9 | Minus |
CG4452-RE | 1583 | CG4452-RE | 414..1227 | 830..17 | 4059 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9368899..9369314 | 831..416 | 2069 | 99.8 | Minus |
3L | 28110227 | 3L | 9369543..9369944 | 418..17 | 2010 | 100 | Minus |
3L | 28110227 | 3L | 9368567..9368665 | 924..826 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:02:00 has no hits.
BS09732.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:24 Download gff for
BS09732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-PA | 254..1173 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:26 Download gff for
BS09732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-PA | 254..1173 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:39:50 Download gff for
BS09732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-RA | 402..1324 | 14..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:37 Download gff for
BS09732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-RA | 402..1324 | 14..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:37 Download gff for
BS09732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9368568..9368661 | 830..923 | 100 | -> | Minus |
3L | 9368901..9369314 | 416..829 | 99 | -> | Minus |
3L | 9369546..9369947 | 14..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:39:50 Download gff for
BS09732.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9361668..9361761 | 830..923 | 100 | -> | Minus |
arm_3L | 9362001..9362414 | 416..829 | 99 | -> | Minus |
arm_3L | 9362646..9363047 | 14..415 | 99 | | Minus |
BS09732.5prime Sequence
874 bp (817 high quality bases) assembled on 2006-04-19
> BS09732.5prime
GAAGTTATCAGTCGACATGAGTGGAAAAGTTTTATTCGCCTGCTCCAAGT
GTTTCTCGCGCCATCTGTACGAGGAGCTCTCCTCCGGCCAGCAACTATGC
AAGGGCTGCCGCGGCTCTACCTCAGTTGGTAAATGTACTTACTGCCGTTC
GGAGTTTCAACCCGCCACCAAATCACAGAGTGCCTGCAAGAAGTGCGAAC
ATTATCTGGGGAAGTACGGCAAACCCAGTGCCTGCGAGTGCTGCAAGATT
GTGGCCGCCTTCGGAGGATCCAAGTGCATGCGATGCGCCAGCTACGAGGC
AAAGTACGGACCGCCGGTGCAGTGCGATGAATGCAAGCTGCGATCAGCCT
TTGACAGGCGCGACGAGAACAAAAAGGTCAATGGCAAATTGCTTTGCTGG
CTGTGTGCCTGCGCCTACAAGCGAGCTCTACTCAAGGCACAGCAGGAGGG
CCGTATACCGATGTCCAAGAAGAGGCCACACGAGAAGACCTCGTCCTCGC
ACAGAGACAGCGCTGCGGCCAAGAAGCCATCGCGCAACGAGCTGGGCAAG
AGCGGCAGCGGTGCCAATAATAGCGGCGTGAATGCCGTAAGCGGAGCTGG
ATTGGATCTACCTGATAAGATCTCACGCGGAAATGGTGGTAATGGGACCA
TTGCAGCGCCTGCTGCCATCACCGTGGACACCAATTCGTCTGATCATGTG
GTTGCTATAACATACCTAAAGGAACGCATCGCCAGTCTGGAGAAGCGCCT
GAATCAAAAAGACAAAGAGCTGCTCGAAAAAGACAAGCAGCTGACCGAAC
TGAAGGGCAAAAACTTCGAGAAGGAGAACGACATGCGCAACCGGCTGAAG
GAAGTGGAGCGTCTGCACGACATG
BS09732.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4452-PA | 1173 | CG4452-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG4452-PB | 963 | CG4452-RB | 150..648 | 376..874 | 2495 | 100 | Plus |
CG4452-PC | 963 | CG4452-RC | 150..648 | 376..874 | 2495 | 100 | Plus |
CG4452-PB | 963 | CG4452-RB | 1..150 | 133..282 | 750 | 100 | Plus |
CG4452-PC | 963 | CG4452-RC | 1..150 | 133..282 | 750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4452-RA | 1670 | CG4452-RA | 149..1006 | 17..874 | 4290 | 100 | Plus |
CG4452-RE | 1583 | CG4452-RE | 414..912 | 376..874 | 2495 | 100 | Plus |
CG4452-RE | 1583 | CG4452-RE | 149..414 | 17..282 | 1330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9368899..9369314 | 375..790 | 2080 | 100 | Plus |
3L | 28110227 | 3L | 9368101..9368214 | 169..282 | 570 | 100 | Plus |
3L | 28110227 | 3L | 9368567..9368665 | 282..380 | 495 | 100 | Plus |
3L | 28110227 | 3L | 9367525..9367612 | 17..104 | 440 | 100 | Plus |
3L | 28110227 | 3L | 9369543..9369629 | 788..874 | 435 | 100 | Plus |
3L | 28110227 | 3L | 9367947..9368013 | 102..168 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:52:00 has no hits.
BS09732.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:25 Download gff for
BS09732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:28 Download gff for
BS09732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:56:15 Download gff for
BS09732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-RA | 141..1006 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:13 Download gff for
BS09732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-RA | 141..1006 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:13 Download gff for
BS09732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9367517..9367611 | 9..103 | 95 | -> | Plus |
3L | 9367949..9368013 | 104..168 | 100 | -> | Plus |
3L | 9368101..9368214 | 169..282 | 100 | -> | Plus |
3L | 9368568..9368661 | 283..376 | 100 | -> | Plus |
3L | 9368901..9369314 | 377..790 | 100 | -> | Plus |
3L | 9369546..9369629 | 791..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:56:15 Download gff for
BS09732.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9360617..9360711 | 9..103 | 95 | -> | Plus |
arm_3L | 9361049..9361113 | 104..168 | 100 | -> | Plus |
arm_3L | 9361201..9361314 | 169..282 | 100 | -> | Plus |
arm_3L | 9361668..9361761 | 283..376 | 100 | -> | Plus |
arm_3L | 9362001..9362414 | 377..790 | 100 | -> | Plus |
arm_3L | 9362646..9362729 | 791..874 | 100 | | Plus |
BS09732.complete Sequence
1205 bp (1205 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636473
> BS09732.complete
GAAGTTATCAGTCGACATGAGTGGAAAAGTTTTATTCGCCTGCTCCAAGT
GTTTCTCGCGCCATCTGTACGAGGAGCTCTCCTCCGGCCAGCAACTATGC
AAGGGCTGCCGCGGCTCTACCTCAGTTGGTAAATGTACTTACTGCCGTTC
GGAGTTTCAACCCGCCACCAAATCACAGAGTGCCTGCAAGAAGTGCGAAC
ATTATCTGGGGAAGTACGGCAAACCCAGTGCCTGCGAGTGCTGCAAGATT
GTGGCCGCCTTCGGAGGATCCAAGTGCATGCGATGCGCCAGCTACGAGGC
AAAGTACGGACCGCCGGTGCAGTGCGATGAATGCAAGCTGCGATCAGCCT
TTGACAGGCGCGACGAGAACAAAAAGGTCAATGGCAAATTGCTTTGCTGG
CTGTGTGCCTGCGCCTACAAGCGAGCTCTACTCAAGGCACAGCAGGAGGG
CCGTATACCGATGTCCAAGAAGAGGCCACACGAGAAGACCTCGTCCTCGC
ACAGAGACAGCGCTGCGGCCAAGAAGCCATCGCGCAACGAGCTGGGCAAG
AGCGGCAGCGGTGCCAATAATAGCGGCGTGAATGCCGTAAGCGGAGCTGG
ATTGGATCTACCTGATAAGATCTCACGCGGAAATGGTGGTAATGGGACCA
TTGCAGCGCCTGCTGCCATCACCGTGGACACCAATTCGTCTGATCATGTG
GTTGCTATAACATACCTAAAGGAACGCATCGCCAGTCTGGAGAAGCGCCT
GAATCAAAAAGACAAAGAGCTGCTCGAAAAAGACAAGCAGCTGACCGAAC
TGAAGGGCAAAAACTTCGAGAAGGAGAACGACATGCGCAACCGGCTGAAG
GAAGTGGAGCGTCTGCACGACATGAAGGTGGACAACTTGAACCGCAAGAT
CGCCAGTGTGCTCAAGGAGCTGGCCGTGCTTAAGAAGAGCAGCAACAAAA
AGACCGCTGCCATTAGCAAGGCAGAAAAGGAGATCATCAAACGTGAGAAC
TTATCGCCCAAGGAGGAAATTCTGGCGACAACGGGGCCGGAAAAACCGAC
CAAGGCCTCGTCGGAGCCCGCCGATCTGGACAAGGACGAAAAGAGTCGCG
ATCGAGACGAGGAACGCAGCGAGCAGGGGGATAGGGCTAGTGTGCGGTCA
CGATCCGCCTCCAGCAGCCCCACGCCCTCGTCCAACTGAAAGCTTTCTAG
ACCAT
BS09732.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4452-RA | 1173 | CG4452-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
CG4452-RE | 471 | CG4452-PE | 1..266 | 17..282 | 1330 | 100 | Plus |
CG4452-RE | 471 | CG4452-PE | 266..471 | 376..581 | 1030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4452-RA | 1670 | CG4452-RA | 149..1321 | 17..1189 | 5865 | 100 | Plus |
CG4452-RE | 1583 | CG4452-RE | 414..1227 | 376..1189 | 4070 | 100 | Plus |
CG4452-RE | 1583 | CG4452-RE | 149..414 | 17..282 | 1330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9368899..9369314 | 375..790 | 2080 | 100 | Plus |
3L | 28110227 | 3L | 9369543..9369944 | 788..1189 | 2010 | 100 | Plus |
3L | 28110227 | 3L | 9368101..9368214 | 169..282 | 570 | 100 | Plus |
3L | 28110227 | 3L | 9368567..9368665 | 282..380 | 495 | 100 | Plus |
3L | 28110227 | 3L | 9367525..9367612 | 17..104 | 440 | 100 | Plus |
3L | 28110227 | 3L | 9367947..9368013 | 102..168 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:23:25 has no hits.
BS09732.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:29 Download gff for
BS09732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:29 Download gff for
BS09732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-RA | 192..1375 | 9..1192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:24 Download gff for
BS09732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-RA | 149..1320 | 17..1188 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:29 Download gff for
BS09732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-RA | 192..1375 | 9..1192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:51 Download gff for
BS09732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4452-RA | 149..1320 | 17..1188 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:51 Download gff for
BS09732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9367525..9367611 | 17..103 | 100 | -> | Plus |
3L | 9367949..9368013 | 104..168 | 100 | -> | Plus |
3L | 9368101..9368214 | 169..282 | 100 | -> | Plus |
3L | 9368568..9368661 | 283..376 | 100 | -> | Plus |
3L | 9368901..9369314 | 377..790 | 100 | -> | Plus |
3L | 9369546..9369943 | 791..1188 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:24 Download gff for
BS09732.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9360625..9360711 | 17..103 | 100 | -> | Plus |
arm_3L | 9361049..9361113 | 104..168 | 100 | -> | Plus |
arm_3L | 9361201..9361314 | 169..282 | 100 | -> | Plus |
arm_3L | 9361668..9361761 | 283..376 | 100 | -> | Plus |
arm_3L | 9362001..9362414 | 377..790 | 100 | -> | Plus |
arm_3L | 9362646..9363043 | 791..1188 | 100 | | Plus |
BS09732.pep Sequence
Translation from 16 to 1188
> BS09732.pep
MSGKVLFACSKCFSRHLYEELSSGQQLCKGCRGSTSVGKCTYCRSEFQPA
TKSQSACKKCEHYLGKYGKPSACECCKIVAAFGGSKCMRCASYEAKYGPP
VQCDECKLRSAFDRRDENKKVNGKLLCWLCACAYKRALLKAQQEGRIPMS
KKRPHEKTSSSHRDSAAAKKPSRNELGKSGSGANNSGVNAVSGAGLDLPD
KISRGNGGNGTIAAPAAITVDTNSSDHVVAITYLKERIASLEKRLNQKDK
ELLEKDKQLTELKGKNFEKENDMRNRLKEVERLHDMKVDNLNRKIASVLK
ELAVLKKSSNKKTAAISKAEKEIIKRENLSPKEEILATTGPEKPTKASSE
PADLDKDEKSRDRDEERSEQGDRASVRSRSASSSPTPSSN*
BS09732.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4452-PA | 390 | CG4452-PA | 1..390 | 1..390 | 2023 | 100 | Plus |
CG4452-PE | 156 | CG4452-PE | 1..89 | 1..89 | 497 | 100 | Plus |