Clone BS09735 Report

Search the DGRC for BS09735

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptAcox57D-d-RA
Protein status:BS09735.pep: full length peptide match
Sequenced Size:2066

Clone Sequence Records

BS09735.3prime Sequence

963 bp (866 high quality bases) assembled on 2006-04-19

> BS09735.3prime
ATGGTCTAGAAAGCTTTTACAGCTTAGCCTTCATCAGGGGCTTCAGGTAG
GTCTCAAATGATGTTTGGACGGGCTTCTGGTTCATGGTGCTGCGTTTGGC
CGAATCGAAGAGCCTGGGATACACATTGCCATCGTAGCTGCCCAGCACGG
AGTTTAGCACACGGTCGTGGAACTCGAATCCATCGCATATGGCCACCGCA
TTGGGTCGGAACTGCGCCAGTGAATCCTCCAAGCGTTTTTGCAGCGATCG
CAGATCCGCATCGCTTAGTTTAATGAATCTTAAAATGTCATTAAGGTTAT
TAAGCACCGTTTGGACCAGAAATAGTTCCAGCACGTTCTCCAATATCTTG
TTCAGTGCGGGGGATCGCTTCTGGGCCTTGGCACCAGTGATCTGCTCCAG
GAATGTTTGGCACACAAACTGCCGGCCATGCAGCTCAGCTGCACGAGTCA
GTTCGATTCCCGTGTTATTGGCCGCCACACCTTGAGACTGACCGCTGGCC
ATGCGATTCGCTAGATTCTCGAAAGCAATGCGGGTCTTGTGTGCAGCCGT
GTATTGCAAAGCCTTGATGATGCACTGCCAGGAGTCGTCCCATTTGGGGA
ACTCCTTCAGCTGCATGGAGCTGGCAAAGTAGCTGTAGGATGCCGATAAT
GGTTTCTTGTCCACGAACGAAGCCCATGCCTTAACTAAAGCTCGTCCAAT
TTGCAGAAGCAGCACCGTGTTCTCGCCTTCGTAGGTGTACGCAGCCACAG
CATTGCCATAGATGTTGCTCAAGTTGGCGGCGATGAGGTAACCATGTCCT
CCAGTGGACAGACGAAGTTTTTCAATGCCAGCACAGCCGTCAGTGGTGCA
AAGGACCTTGAGCGCGCANGACAGGATGTGCATGTCGGGCAGTCGCTCGA
ACTTGCCGTTTGTGGCTTCCTGCAACGTCTGGGCATACATTTTCCACATG
TACTCGGTGGCCA

BS09735.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9709-PA 2034 Acox57D-d-RA 1088..2034 963..17 4616 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-RA 2252 CG9709-RA 1182..2129 963..16 4669 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21391181..21391604 963..540 2049 98.8 Minus
2R 25286936 2R 21392055..21392316 277..16 1310 100 Minus
2R 25286936 2R 21391838..21391995 435..278 790 100 Minus
2R 25286936 2R 21391661..21391766 539..434 530 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:41:41 has no hits.

BS09735.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:30 Download gff for BS09735.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9709-PA 1089..2034 17..962 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:35 Download gff for BS09735.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9709-PA 1089..2034 17..962 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:20:10 Download gff for BS09735.3prime
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 1183..2131 13..962 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:35 Download gff for BS09735.3prime
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 1183..2131 13..962 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:35 Download gff for BS09735.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21391182..21391604 540..962 98 -> Minus
2R 21391661..21391766 434..539 100 -> Minus
2R 21391840..21391995 278..433 100 -> Minus
2R 21392055..21392318 13..277 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:20:10 Download gff for BS09735.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17278687..17279109 540..962 98 -> Minus
arm_2R 17279166..17279271 434..539 100 -> Minus
arm_2R 17279345..17279500 278..433 100 -> Minus
arm_2R 17279560..17279823 13..277 99   Minus

BS09735.5prime Sequence

882 bp (779 high quality bases) assembled on 2006-04-19

> BS09735.5prime
GAAGTTATCAGTCGACATGTCGCATATTAAAAACCTTATACCGAGCACAG
TGAATCCAGATCTTCAAAAGGAACGTGCTGCAGCTGAATTCCATGTGGAG
GAATTCTCCGCCTGGTGGCACGGTGGTCAAGACAAACTGAAGAAGAAGCG
CGAAATCGAGAAAGCGATCTTCAGCGATCTTGAGGATGGCTATGGCCTCA
ACCATGAGTACATGTCCCACGAGGAGGTCTACAATTCCACGGTGAAGAAG
GTGGCTGAGGCAGCTGTTAAGCTCAAGGCTCTGCAGAACAAGCTTAATCC
TGGAGGAACTGACATCTGGCCTGGAGGACTATTCAATGCACAGAGCTTTG
GACTTTTTCCGGCTAATCATCCGATTGCCACCCACATCACCATGTTCGTG
GATGTGATCAAAGGTCAGGGCACTGCCGAACAGGTGGAGAAGTGGGGCAA
GGCGGCGGAGAACTGCAACATTATCGGCACCTACGCCCAAACGGAGCTGG
CCCATGGCACCAATGTCCGTGGCTTGGCCACTCGGGCTGACTTTGATCCC
AAAACGGATGAGTTTGTGCTAAATACACCGAACTTGGAGGCCTACAAATG
GTGGCCCGGCGGCTTGGGACACACGGCCAATCATGCAATGGTAGTAGCCC
AACTATATATCGCCGATGTTCATCATGGCGTGCAAATGTTTATTGTGCCG
TTAAGAGATTCCGAAACTCACATGCCACTGCCGGGTGTTGATATCGGTGA
GATTGGCAAGAAGCTCGGCATGGCATCCGTGAACCAGGGCTTCCTGGGAC
TGAACCACGTTCGAATTCCGCGCACCAACATGCTGATGAAGTTCGCCAAG
GTGGAGCGGGATGGCACCTTCAAGGGCAGCCC

BS09735.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9709-PA 2034 Acox57D-d-RA 1..866 17..882 4280 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-RA 2252 CG9709-RA 95..960 17..882 4300 99.8 Plus
Acox57D-p-RB 2235 CG9707-RB 515..673 475..633 180 74.2 Plus
Acox57D-p-RA 2552 CG9707-RA 832..990 475..633 180 74.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21390283..21390575 322..614 1465 100 Plus
2R 25286936 2R 21390638..21390905 615..882 1325 99.6 Plus
2R 25286936 2R 21390058..21390221 158..321 820 100 Plus
2R 25286936 2R 21389499..21389640 17..158 695 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 19:55:19 has no hits.

BS09735.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:32 Download gff for BS09735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9709-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:36 Download gff for BS09735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9709-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:29 Download gff for BS09735.5prime
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 86..960 9..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:01 Download gff for BS09735.5prime
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 86..960 9..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:01 Download gff for BS09735.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21390638..21390905 615..882 99   Plus
2R 21389490..21389640 9..158 96 -> Plus
2R 21390059..21390221 159..321 100 -> Plus
2R 21390283..21390575 322..614 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:29 Download gff for BS09735.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17278143..17278410 615..882 99   Plus
arm_2R 17276995..17277145 9..158 96 -> Plus
arm_2R 17277564..17277726 159..321 100 -> Plus
arm_2R 17277788..17278080 322..614 100 -> Plus

BS09735.complete Sequence

2066 bp assembled on 2010-05-10

GenBank Submission: KX804602

> BS09735.complete
GAAGTTATCAGTCGACATGTCGCATATTAAAAACCTTATACCGAGCACAG
TGAATCCAGATCTTCAAAAGGAACGTGCTGCAGCTGAATTCCATGTGGAG
GAATTCTCCGCCTGGTGGCACGGTGGTCAAGACAAACTGAAGAAGAAGCG
CGAAATCGAGAAAGCGATCTTCAGCGATCTTGAGGATGGCTATGGCCTCA
ACCATGAGTACATGTCCCACGAGGAGGTCTACAATTCCACGGTGAAGAAG
GTGGCTGAGGCAGCTGTTAAGCTCAAGGCTCTGCAGAACAAGCTTAATCC
TGGAGGAACTGACATCTGGCCTGGAGGACTATTCAATGCACAGAGCTTTG
GACTTTTTCCGGCTAATCATCCGATTGCCACCCACATCACCATGTTCGTG
GATGTGATCAAAGGTCAGGGCACTGCCGAACAGGTGGAGAAGTGGGGCAA
GGCGGCGGAGAACTGCAACATTATCGGCACCTACGCCCAAACGGAGCTGG
CCCATGGCACCAATGTCCGTGGCTTGGCCACTCGGGCTGACTTTGATCCC
AAAACGGATGAGTTTGTGCTAAATACACCGAACTTGGAGGCCTACAAATG
GTGGCCCGGCGGCTTGGGACACACGGCCAATCATGCAATGGTAGTAGCCC
AACTATATATCGCCGATGTTCATCATGGCGTGCAAATGTTTATTGTGCCG
TTAAGAGATTCCGAAACTCACATGCCACTGCCGGGTGTTGATATCGGTGA
GATTGGCAAGAAGCTCGGCATGGCATCCGTGAACCAGGGCTTCCTGGGAC
TGAACCACGTTCGAATTCCGCGCACCAACATGCTGATGAAGTTCGCCAAG
GTGGAGCGGGATGGCACCTTCAAGGCCAGCCCGGCATCGAGGATTAACTA
CCTGACCATGGTGTACACGCGCTGCTTGATCGTTAGCCAGAACTCCACGT
TGCTCCTGGCGGCGGCAACCATAGCCACGAGATACTCGGCAGTGCGGCGT
CAGAGTCCCATTGAGCCCAATCAACCCGAGCCCCAGATCATAGATCATGT
GACCCAGCGCCTGAAGCTCTTCCCTGAGATCGCTACGGGAATCGCCTACC
ATCTGGCCACCGAGTACATGTGGGAAATGTATGCCCAGACGGTGCAGGAA
GCCAACAACGGCAAGTTCGAGCGACTGCCCGACATGCACATCCTGTCCTG
CGCGCTCAAGGTCCTTTGCACCACTGACGGCTGTGCTGGCATTGAAAAAC
TTCGTCTGTCCACTGGAGGACATGGTTACCTCATCGCCGCCAACTTGAGC
AACATCTATGGCAATGCTGTGGCTGCGTACACCTACGAAGGCGAGAACAC
GGTGCTGCTTCTGCAAATTGGACGAGCTTTAGTTAAGGCATGGGCTTCGT
TCGTGGACAAGAAACCATTATCGGCATCCTACAGCTACTTTGCCAGCTCC
ATGCAGCTGAAGGAGTTCCCCAAATGGGACGACTCCTGGCAGTGCATCAT
CAAGGCTTTGCAATACACGGCTGCACACAAGACCCGCATTGCTTTCGAGA
ATCTAGCGAATCGCATGGCCAGCGGTCAGTCTCAAGGTGTGGCGGCCAAT
AACACGGGAATCGAACTGACTCGTGCAGCTGAGCTGCATGGCCGGCAGTT
TGTGTGCCAAACATTCCTGGAGCAGATCACTGGTGCCAAGGCCCAGAAGC
GATCCCCCGCACTGAACAAGATATTGGAGAACGTGCTGGAACTATTTCTG
GTCCAAACGGTGCTTAATAACCTTAATGACATTTTAAGATTCATTAAACT
AAGCGATGCGGATCTGCGATCGCTGCAAAAACGCTTGGAGGATTCACTGG
CGCAGTTCCGACCCAATGCGGTGGCCATATGCGATGGATTCGAGTTCCAC
GACCGTGTGCTAAACTCCGTGCTGGGCAGCTACGATGGCAATGTGTATCC
CAGGCTCTTCGATTCGGCCAAACGCAGCACCATGAACCAGAAGCCCGTCC
AAACATCATTTGAGACCTACCTGAAGCCCCTGATGAAGGCTAAGCTGTAA
AAGCTTTCTAGACCAT

BS09735.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-RA 2034 CG9709-PA 1..2034 17..2050 10155 100 Plus
Acox57D-p-RB 2034 CG9707-PB 952..1064 968..1080 220 79.6 Plus
Acox57D-p-RA 2034 CG9707-PA 952..1064 968..1080 220 79.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-RA 2252 CG9709-RA 95..2129 17..2051 10160 100 Plus
Acox57D-p-RB 2235 CG9707-RB 1008..1120 968..1080 220 79.6 Plus
Acox57D-p-RA 2552 CG9707-RA 1325..1437 968..1080 220 79.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21391098..21391604 1021..1527 2535 100 Plus
2R 25286936 2R 21390638..21391043 615..1020 2030 100 Plus
2R 25286936 2R 21390283..21390575 322..614 1465 100 Plus
2R 25286936 2R 21392055..21392316 1790..2051 1310 100 Plus
2R 25286936 2R 21390058..21390221 158..321 820 100 Plus
2R 25286936 2R 21391838..21391995 1632..1789 790 100 Plus
2R 25286936 2R 21389499..21389640 17..158 695 99.3 Plus
2R 25286936 2R 21391661..21391766 1528..1633 530 100 Plus
2R 25286936 2R 17763111..17763222 974..1085 185 77.7 Plus
Blast to na_te.dros performed on 2014-11-28 02:45:06 has no hits.

BS09735.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:13 Download gff for BS09735.complete
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 110..2141 17..2048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:33 Download gff for BS09735.complete
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 95..2126 17..2048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:17 Download gff for BS09735.complete
Subject Subject Range Query Range Percent Splice Strand
Acox57D-d-RA 95..2126 17..2048 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:17 Download gff for BS09735.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21389499..21389640 17..158 99 -> Plus
2R 21390059..21390221 159..321 100 -> Plus
2R 21390283..21390575 322..614 100 -> Plus
2R 21390638..21391043 615..1020 100 -> Plus
2R 21391098..21391604 1021..1527 100 -> Plus
2R 21391661..21391766 1528..1633 100 -> Plus
2R 21391840..21391995 1634..1789 100 -> Plus
2R 21392055..21392313 1790..2048 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:33 Download gff for BS09735.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17277004..17277145 17..158 99 -> Plus
arm_2R 17277564..17277726 159..321 100 -> Plus
arm_2R 17277788..17278080 322..614 100 -> Plus
arm_2R 17278143..17278548 615..1020 100 -> Plus
arm_2R 17278603..17279109 1021..1527 100 -> Plus
arm_2R 17279166..17279271 1528..1633 100 -> Plus
arm_2R 17279345..17279500 1634..1789 100 -> Plus
arm_2R 17279560..17279818 1790..2048 100   Plus

BS09735.pep Sequence

Translation from 16 to 2049

> BS09735.pep
MSHIKNLIPSTVNPDLQKERAAAEFHVEEFSAWWHGGQDKLKKKREIEKA
IFSDLEDGYGLNHEYMSHEEVYNSTVKKVAEAAVKLKALQNKLNPGGTDI
WPGGLFNAQSFGLFPANHPIATHITMFVDVIKGQGTAEQVEKWGKAAENC
NIIGTYAQTELAHGTNVRGLATRADFDPKTDEFVLNTPNLEAYKWWPGGL
GHTANHAMVVAQLYIADVHHGVQMFIVPLRDSETHMPLPGVDIGEIGKKL
GMASVNQGFLGLNHVRIPRTNMLMKFAKVERDGTFKASPASRINYLTMVY
TRCLIVSQNSTLLLAAATIATRYSAVRRQSPIEPNQPEPQIIDHVTQRLK
LFPEIATGIAYHLATEYMWEMYAQTVQEANNGKFERLPDMHILSCALKVL
CTTDGCAGIEKLRLSTGGHGYLIAANLSNIYGNAVAAYTYEGENTVLLLQ
IGRALVKAWASFVDKKPLSASYSYFASSMQLKEFPKWDDSWQCIIKALQY
TAAHKTRIAFENLANRMASGQSQGVAANNTGIELTRAAELHGRQFVCQTF
LEQITGAKAQKRSPALNKILENVLELFLVQTVLNNLNDILRFIKLSDADL
RSLQKRLEDSLAQFRPNAVAICDGFEFHDRVLNSVLGSYDGNVYPRLFDS
AKRSTMNQKPVQTSFETYLKPLMKAKL*

BS09735.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Acox57D-d-PA 677 CG9709-PA 1..677 1..677 3526 100 Plus
Acox57D-p-PB 677 CG9707-PB 1..677 1..677 1910 53.4 Plus
Acox57D-p-PA 677 CG9707-PA 1..677 1..677 1910 53.4 Plus
CG5009-PA 669 CG5009-PA 6..669 12..677 1683 49.7 Plus
CG4586-PA 677 CG4586-PA 2..677 11..677 1379 43 Plus