Clone Sequence Records
BS09735.3prime Sequence
963 bp (866 high quality bases) assembled on 2006-04-19
> BS09735.3prime
ATGGTCTAGAAAGCTTTTACAGCTTAGCCTTCATCAGGGGCTTCAGGTAG
GTCTCAAATGATGTTTGGACGGGCTTCTGGTTCATGGTGCTGCGTTTGGC
CGAATCGAAGAGCCTGGGATACACATTGCCATCGTAGCTGCCCAGCACGG
AGTTTAGCACACGGTCGTGGAACTCGAATCCATCGCATATGGCCACCGCA
TTGGGTCGGAACTGCGCCAGTGAATCCTCCAAGCGTTTTTGCAGCGATCG
CAGATCCGCATCGCTTAGTTTAATGAATCTTAAAATGTCATTAAGGTTAT
TAAGCACCGTTTGGACCAGAAATAGTTCCAGCACGTTCTCCAATATCTTG
TTCAGTGCGGGGGATCGCTTCTGGGCCTTGGCACCAGTGATCTGCTCCAG
GAATGTTTGGCACACAAACTGCCGGCCATGCAGCTCAGCTGCACGAGTCA
GTTCGATTCCCGTGTTATTGGCCGCCACACCTTGAGACTGACCGCTGGCC
ATGCGATTCGCTAGATTCTCGAAAGCAATGCGGGTCTTGTGTGCAGCCGT
GTATTGCAAAGCCTTGATGATGCACTGCCAGGAGTCGTCCCATTTGGGGA
ACTCCTTCAGCTGCATGGAGCTGGCAAAGTAGCTGTAGGATGCCGATAAT
GGTTTCTTGTCCACGAACGAAGCCCATGCCTTAACTAAAGCTCGTCCAAT
TTGCAGAAGCAGCACCGTGTTCTCGCCTTCGTAGGTGTACGCAGCCACAG
CATTGCCATAGATGTTGCTCAAGTTGGCGGCGATGAGGTAACCATGTCCT
CCAGTGGACAGACGAAGTTTTTCAATGCCAGCACAGCCGTCAGTGGTGCA
AAGGACCTTGAGCGCGCANGACAGGATGTGCATGTCGGGCAGTCGCTCGA
ACTTGCCGTTTGTGGCTTCCTGCAACGTCTGGGCATACATTTTCCACATG
TACTCGGTGGCCA
BS09735.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9709-PA | 2034 | Acox57D-d-RA | 1088..2034 | 963..17 | 4616 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-RA | 2252 | CG9709-RA | 1182..2129 | 963..16 | 4669 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21391181..21391604 | 963..540 | 2049 | 98.8 | Minus |
2R | 25286936 | 2R | 21392055..21392316 | 277..16 | 1310 | 100 | Minus |
2R | 25286936 | 2R | 21391838..21391995 | 435..278 | 790 | 100 | Minus |
2R | 25286936 | 2R | 21391661..21391766 | 539..434 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:41:41 has no hits.
BS09735.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:30 Download gff for
BS09735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9709-PA | 1089..2034 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:35 Download gff for
BS09735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9709-PA | 1089..2034 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:20:10 Download gff for
BS09735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 1183..2131 | 13..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:35 Download gff for
BS09735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 1183..2131 | 13..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:35 Download gff for
BS09735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21391182..21391604 | 540..962 | 98 | -> | Minus |
2R | 21391661..21391766 | 434..539 | 100 | -> | Minus |
2R | 21391840..21391995 | 278..433 | 100 | -> | Minus |
2R | 21392055..21392318 | 13..277 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:20:10 Download gff for
BS09735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17278687..17279109 | 540..962 | 98 | -> | Minus |
arm_2R | 17279166..17279271 | 434..539 | 100 | -> | Minus |
arm_2R | 17279345..17279500 | 278..433 | 100 | -> | Minus |
arm_2R | 17279560..17279823 | 13..277 | 99 | | Minus |
BS09735.5prime Sequence
882 bp (779 high quality bases) assembled on 2006-04-19
> BS09735.5prime
GAAGTTATCAGTCGACATGTCGCATATTAAAAACCTTATACCGAGCACAG
TGAATCCAGATCTTCAAAAGGAACGTGCTGCAGCTGAATTCCATGTGGAG
GAATTCTCCGCCTGGTGGCACGGTGGTCAAGACAAACTGAAGAAGAAGCG
CGAAATCGAGAAAGCGATCTTCAGCGATCTTGAGGATGGCTATGGCCTCA
ACCATGAGTACATGTCCCACGAGGAGGTCTACAATTCCACGGTGAAGAAG
GTGGCTGAGGCAGCTGTTAAGCTCAAGGCTCTGCAGAACAAGCTTAATCC
TGGAGGAACTGACATCTGGCCTGGAGGACTATTCAATGCACAGAGCTTTG
GACTTTTTCCGGCTAATCATCCGATTGCCACCCACATCACCATGTTCGTG
GATGTGATCAAAGGTCAGGGCACTGCCGAACAGGTGGAGAAGTGGGGCAA
GGCGGCGGAGAACTGCAACATTATCGGCACCTACGCCCAAACGGAGCTGG
CCCATGGCACCAATGTCCGTGGCTTGGCCACTCGGGCTGACTTTGATCCC
AAAACGGATGAGTTTGTGCTAAATACACCGAACTTGGAGGCCTACAAATG
GTGGCCCGGCGGCTTGGGACACACGGCCAATCATGCAATGGTAGTAGCCC
AACTATATATCGCCGATGTTCATCATGGCGTGCAAATGTTTATTGTGCCG
TTAAGAGATTCCGAAACTCACATGCCACTGCCGGGTGTTGATATCGGTGA
GATTGGCAAGAAGCTCGGCATGGCATCCGTGAACCAGGGCTTCCTGGGAC
TGAACCACGTTCGAATTCCGCGCACCAACATGCTGATGAAGTTCGCCAAG
GTGGAGCGGGATGGCACCTTCAAGGGCAGCCC
BS09735.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9709-PA | 2034 | Acox57D-d-RA | 1..866 | 17..882 | 4280 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-RA | 2252 | CG9709-RA | 95..960 | 17..882 | 4300 | 99.8 | Plus |
Acox57D-p-RB | 2235 | CG9707-RB | 515..673 | 475..633 | 180 | 74.2 | Plus |
Acox57D-p-RA | 2552 | CG9707-RA | 832..990 | 475..633 | 180 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21390283..21390575 | 322..614 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 21390638..21390905 | 615..882 | 1325 | 99.6 | Plus |
2R | 25286936 | 2R | 21390058..21390221 | 158..321 | 820 | 100 | Plus |
2R | 25286936 | 2R | 21389499..21389640 | 17..158 | 695 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:55:19 has no hits.
BS09735.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:32 Download gff for
BS09735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9709-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:36 Download gff for
BS09735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9709-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:29 Download gff for
BS09735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 86..960 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:01 Download gff for
BS09735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 86..960 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:01 Download gff for
BS09735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21390638..21390905 | 615..882 | 99 | | Plus |
2R | 21389490..21389640 | 9..158 | 96 | -> | Plus |
2R | 21390059..21390221 | 159..321 | 100 | -> | Plus |
2R | 21390283..21390575 | 322..614 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:29 Download gff for
BS09735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17278143..17278410 | 615..882 | 99 | | Plus |
arm_2R | 17276995..17277145 | 9..158 | 96 | -> | Plus |
arm_2R | 17277564..17277726 | 159..321 | 100 | -> | Plus |
arm_2R | 17277788..17278080 | 322..614 | 100 | -> | Plus |
BS09735.complete Sequence
2066 bp assembled on 2010-05-10
GenBank Submission: KX804602
> BS09735.complete
GAAGTTATCAGTCGACATGTCGCATATTAAAAACCTTATACCGAGCACAG
TGAATCCAGATCTTCAAAAGGAACGTGCTGCAGCTGAATTCCATGTGGAG
GAATTCTCCGCCTGGTGGCACGGTGGTCAAGACAAACTGAAGAAGAAGCG
CGAAATCGAGAAAGCGATCTTCAGCGATCTTGAGGATGGCTATGGCCTCA
ACCATGAGTACATGTCCCACGAGGAGGTCTACAATTCCACGGTGAAGAAG
GTGGCTGAGGCAGCTGTTAAGCTCAAGGCTCTGCAGAACAAGCTTAATCC
TGGAGGAACTGACATCTGGCCTGGAGGACTATTCAATGCACAGAGCTTTG
GACTTTTTCCGGCTAATCATCCGATTGCCACCCACATCACCATGTTCGTG
GATGTGATCAAAGGTCAGGGCACTGCCGAACAGGTGGAGAAGTGGGGCAA
GGCGGCGGAGAACTGCAACATTATCGGCACCTACGCCCAAACGGAGCTGG
CCCATGGCACCAATGTCCGTGGCTTGGCCACTCGGGCTGACTTTGATCCC
AAAACGGATGAGTTTGTGCTAAATACACCGAACTTGGAGGCCTACAAATG
GTGGCCCGGCGGCTTGGGACACACGGCCAATCATGCAATGGTAGTAGCCC
AACTATATATCGCCGATGTTCATCATGGCGTGCAAATGTTTATTGTGCCG
TTAAGAGATTCCGAAACTCACATGCCACTGCCGGGTGTTGATATCGGTGA
GATTGGCAAGAAGCTCGGCATGGCATCCGTGAACCAGGGCTTCCTGGGAC
TGAACCACGTTCGAATTCCGCGCACCAACATGCTGATGAAGTTCGCCAAG
GTGGAGCGGGATGGCACCTTCAAGGCCAGCCCGGCATCGAGGATTAACTA
CCTGACCATGGTGTACACGCGCTGCTTGATCGTTAGCCAGAACTCCACGT
TGCTCCTGGCGGCGGCAACCATAGCCACGAGATACTCGGCAGTGCGGCGT
CAGAGTCCCATTGAGCCCAATCAACCCGAGCCCCAGATCATAGATCATGT
GACCCAGCGCCTGAAGCTCTTCCCTGAGATCGCTACGGGAATCGCCTACC
ATCTGGCCACCGAGTACATGTGGGAAATGTATGCCCAGACGGTGCAGGAA
GCCAACAACGGCAAGTTCGAGCGACTGCCCGACATGCACATCCTGTCCTG
CGCGCTCAAGGTCCTTTGCACCACTGACGGCTGTGCTGGCATTGAAAAAC
TTCGTCTGTCCACTGGAGGACATGGTTACCTCATCGCCGCCAACTTGAGC
AACATCTATGGCAATGCTGTGGCTGCGTACACCTACGAAGGCGAGAACAC
GGTGCTGCTTCTGCAAATTGGACGAGCTTTAGTTAAGGCATGGGCTTCGT
TCGTGGACAAGAAACCATTATCGGCATCCTACAGCTACTTTGCCAGCTCC
ATGCAGCTGAAGGAGTTCCCCAAATGGGACGACTCCTGGCAGTGCATCAT
CAAGGCTTTGCAATACACGGCTGCACACAAGACCCGCATTGCTTTCGAGA
ATCTAGCGAATCGCATGGCCAGCGGTCAGTCTCAAGGTGTGGCGGCCAAT
AACACGGGAATCGAACTGACTCGTGCAGCTGAGCTGCATGGCCGGCAGTT
TGTGTGCCAAACATTCCTGGAGCAGATCACTGGTGCCAAGGCCCAGAAGC
GATCCCCCGCACTGAACAAGATATTGGAGAACGTGCTGGAACTATTTCTG
GTCCAAACGGTGCTTAATAACCTTAATGACATTTTAAGATTCATTAAACT
AAGCGATGCGGATCTGCGATCGCTGCAAAAACGCTTGGAGGATTCACTGG
CGCAGTTCCGACCCAATGCGGTGGCCATATGCGATGGATTCGAGTTCCAC
GACCGTGTGCTAAACTCCGTGCTGGGCAGCTACGATGGCAATGTGTATCC
CAGGCTCTTCGATTCGGCCAAACGCAGCACCATGAACCAGAAGCCCGTCC
AAACATCATTTGAGACCTACCTGAAGCCCCTGATGAAGGCTAAGCTGTAA
AAGCTTTCTAGACCAT
BS09735.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-RA | 2034 | CG9709-PA | 1..2034 | 17..2050 | 10155 | 100 | Plus |
Acox57D-p-RB | 2034 | CG9707-PB | 952..1064 | 968..1080 | 220 | 79.6 | Plus |
Acox57D-p-RA | 2034 | CG9707-PA | 952..1064 | 968..1080 | 220 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-RA | 2252 | CG9709-RA | 95..2129 | 17..2051 | 10160 | 100 | Plus |
Acox57D-p-RB | 2235 | CG9707-RB | 1008..1120 | 968..1080 | 220 | 79.6 | Plus |
Acox57D-p-RA | 2552 | CG9707-RA | 1325..1437 | 968..1080 | 220 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21391098..21391604 | 1021..1527 | 2535 | 100 | Plus |
2R | 25286936 | 2R | 21390638..21391043 | 615..1020 | 2030 | 100 | Plus |
2R | 25286936 | 2R | 21390283..21390575 | 322..614 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 21392055..21392316 | 1790..2051 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 21390058..21390221 | 158..321 | 820 | 100 | Plus |
2R | 25286936 | 2R | 21391838..21391995 | 1632..1789 | 790 | 100 | Plus |
2R | 25286936 | 2R | 21389499..21389640 | 17..158 | 695 | 99.3 | Plus |
2R | 25286936 | 2R | 21391661..21391766 | 1528..1633 | 530 | 100 | Plus |
2R | 25286936 | 2R | 17763111..17763222 | 974..1085 | 185 | 77.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:45:06 has no hits.
BS09735.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:13 Download gff for
BS09735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 110..2141 | 17..2048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:33 Download gff for
BS09735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 95..2126 | 17..2048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:17 Download gff for
BS09735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acox57D-d-RA | 95..2126 | 17..2048 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:17 Download gff for
BS09735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21389499..21389640 | 17..158 | 99 | -> | Plus |
2R | 21390059..21390221 | 159..321 | 100 | -> | Plus |
2R | 21390283..21390575 | 322..614 | 100 | -> | Plus |
2R | 21390638..21391043 | 615..1020 | 100 | -> | Plus |
2R | 21391098..21391604 | 1021..1527 | 100 | -> | Plus |
2R | 21391661..21391766 | 1528..1633 | 100 | -> | Plus |
2R | 21391840..21391995 | 1634..1789 | 100 | -> | Plus |
2R | 21392055..21392313 | 1790..2048 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:33 Download gff for
BS09735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17277004..17277145 | 17..158 | 99 | -> | Plus |
arm_2R | 17277564..17277726 | 159..321 | 100 | -> | Plus |
arm_2R | 17277788..17278080 | 322..614 | 100 | -> | Plus |
arm_2R | 17278143..17278548 | 615..1020 | 100 | -> | Plus |
arm_2R | 17278603..17279109 | 1021..1527 | 100 | -> | Plus |
arm_2R | 17279166..17279271 | 1528..1633 | 100 | -> | Plus |
arm_2R | 17279345..17279500 | 1634..1789 | 100 | -> | Plus |
arm_2R | 17279560..17279818 | 1790..2048 | 100 | | Plus |
BS09735.pep Sequence
Translation from 16 to 2049
> BS09735.pep
MSHIKNLIPSTVNPDLQKERAAAEFHVEEFSAWWHGGQDKLKKKREIEKA
IFSDLEDGYGLNHEYMSHEEVYNSTVKKVAEAAVKLKALQNKLNPGGTDI
WPGGLFNAQSFGLFPANHPIATHITMFVDVIKGQGTAEQVEKWGKAAENC
NIIGTYAQTELAHGTNVRGLATRADFDPKTDEFVLNTPNLEAYKWWPGGL
GHTANHAMVVAQLYIADVHHGVQMFIVPLRDSETHMPLPGVDIGEIGKKL
GMASVNQGFLGLNHVRIPRTNMLMKFAKVERDGTFKASPASRINYLTMVY
TRCLIVSQNSTLLLAAATIATRYSAVRRQSPIEPNQPEPQIIDHVTQRLK
LFPEIATGIAYHLATEYMWEMYAQTVQEANNGKFERLPDMHILSCALKVL
CTTDGCAGIEKLRLSTGGHGYLIAANLSNIYGNAVAAYTYEGENTVLLLQ
IGRALVKAWASFVDKKPLSASYSYFASSMQLKEFPKWDDSWQCIIKALQY
TAAHKTRIAFENLANRMASGQSQGVAANNTGIELTRAAELHGRQFVCQTF
LEQITGAKAQKRSPALNKILENVLELFLVQTVLNNLNDILRFIKLSDADL
RSLQKRLEDSLAQFRPNAVAICDGFEFHDRVLNSVLGSYDGNVYPRLFDS
AKRSTMNQKPVQTSFETYLKPLMKAKL*
BS09735.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acox57D-d-PA | 677 | CG9709-PA | 1..677 | 1..677 | 3526 | 100 | Plus |
Acox57D-p-PB | 677 | CG9707-PB | 1..677 | 1..677 | 1910 | 53.4 | Plus |
Acox57D-p-PA | 677 | CG9707-PA | 1..677 | 1..677 | 1910 | 53.4 | Plus |
CG5009-PA | 669 | CG5009-PA | 6..669 | 12..677 | 1683 | 49.7 | Plus |
CG4586-PA | 677 | CG4586-PA | 2..677 | 11..677 | 1379 | 43 | Plus |