Clone Sequence Records
BS09740.3prime Sequence
916 bp (806 high quality bases) assembled on 2006-04-19
> BS09740.3prime
ATGGTCTAGAAAGCTTTTAGAGCATTGCAACCAGCGAACCCACGAGGAGC
AGGCCCACGGATAATGCCAACTGGGAGGCACCAGCATAGCAGTCGGTGAT
GCGGCGTGCTCGCATAAAATCGCTGCCCAAATAGGCATCATACCTGCGCT
TATTGGGCGGAATTACTTGCAGCTGCCGCGTGGCGTCCTGGAAGATCAGA
TCATAGTGCCCGATCGGCGAGGAGAACATGCTGAAACTGAAGGCGTCCAC
TTCCTTGCGACCGTACAGTTGTTGGGCATAGGTCAGCAGATTGATGTAGG
CATTCATCTGGGTCTCGTTGTAGTTGACTCCGCCGCGGGTGACCACAGCA
TTGGCCTTAACCTTGCCCAGATTGCAGCGCTTGTAGTCCTGGATCTCGGC
ACGAGTACCATCCGTGCAGAGCAGCTCAAAGTCATCGTTTAGGGCATTCC
TGGCCCACCATTCCTTGCGTTTGCCGCCCGTGCTTTCCATCACCGTGGTG
TGCTTCATGAAGGCCACGTGACCGCCGCCCTCGACGAGGCAACGGAATGC
ACCCGTGTGCCCGTAGTATTCCTCGGAGGCATCGCGACGACAATAGCGAT
AGCTAGTTCCATGACACAGATCGCACATGCTGTCGTAGGGCACACCGGTG
TTGTACTCATTGCTAATGGCACCCGGCACGCACGACTTGGTGAAGTACTC
CGCGGCAGCTCGAACCGAATCGCATCCGTAGGGACGAATCCAGCCGTTCG
AGATGAAAAGCGCCATCGGATATGTCCAGCCAGCGGCGGTGTTAATGCCC
GTATGGCAGGTATTCTTACCCTTCANGTAAGTTAGCTCCGTATCGGGATC
ATCCTCCTTTTGGCACGGCACCACATAATACTCGGGCTCGCCCAGATTGT
ACACCTCCGACATGAA
BS09740.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10620-PA | 2460 | Tsf2-RA | 1618..2460 | 859..17 | 4196 | 99.8 | Minus |
| CG10620-PA | 2460 | Tsf2-RA | 1561..1607 | 916..870 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf2-RA | 2884 | CG10620-RA | 1673..2572 | 916..17 | 4414 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12530748..12531647 | 17..916 | 4364 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:40:11 has no hits.
BS09740.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:40 Download gff for
BS09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf2-PA | 1563..2460 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:49 Download gff for
BS09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10620-PA | 1563..2460 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:17:04 Download gff for
BS09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf2-RA | 1673..2574 | 13..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:25:08 Download gff for
BS09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf2-RA | 1673..2574 | 13..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:25:08 Download gff for
BS09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12530746..12531647 | 13..916 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:17:04 Download gff for
BS09740.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12523846..12524747 | 13..916 | 99 | | Plus |
BS09740.5prime Sequence
962 bp (732 high quality bases) assembled on 2006-04-19
> BS09740.5prime
GAAGTTATCAGTCGTCATGGCTAGCAGCCTCGTTTTTGTGGCTCTAGTCG
GCGCCTTATGTTTTACGCTCGCTAACGCACAACATCACTACGATGAGCAC
AAGACCACACGGATGGTGTGGTGCACCAAGAGCCAGGCGGAGCAGTACAA
ATGCCAGAACCTTACGGTGGCCATCGAGCGGGATCGGGCACTATTCGACG
AGGTGTTCCTCAATCTCACCTGCTTCATGGCCTACAGTGCGGATGAGTGC
ATCCATCACATTGATCGCGAGAAGGCACACATCACCACGCTGGATGCGGG
CGATGTCTTCACTGCTGGACGGTACAACTCCCTCATACCCATTATGCAGG
AGAAACTGGAGGGCGGCTTTGCGGACTATCAATCCGTAGCCGTGATCAAG
AAGGGATCTCTACCAGACTTGAACAATCTGCGCGACATGCGCAACAAGAG
GGTGTGCTTCCCCTGGGTGGGCAGCTTGGCCGGTTGGATTGTGCCCATTC
ACACGCTCCAAAGGGAGGGCGGCATGGAAGTGGTGGACTGCAACAACCAG
GTGAAGACGGCCGCCAGCTATTTCAATAATTCGTGTGCTGTGTACTCGCT
TTCCGACAAACACAATCCAATTGGCGACAACTCCGATAAACTTTGTACGC
TTTGCACTGGAAAGATACCCGGAGGACGCTGCTCATCTGCAGATCCCTAC
TTCGGCTACGAAGGCGCCTTCAAATGTCTGCTTGAAAAAGGAGATGTTGC
CTTCTTGCGCCATTCGACTGTGAATGAAATGCTGCAAACCACCGAATTCA
AGAACATAGCACCCGACACTTTTGAGCTGCTGTGTCGTGATGGTCGTCGT
GCCTCCCATCACGATTATCGCCAGTGTAATTGGGGGCAAGTGCCCGCCGA
TGCCATTGTCACATCTTCGGCTCGCAGCTTCAGCGATCGCAAGCAGTATC
AGCAGTTTTTTG
BS09740.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10620-PA | 2460 | Tsf2-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
| CG10620-PA | 2460 | Tsf2-RA | 845..944 | 861..960 | 475 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf2-RA | 2884 | CG10620-RA | 113..1056 | 17..960 | 4660 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12533051..12533479 | 505..77 | 2145 | 100 | Minus |
| 3L | 28110227 | 3L | 12532612..12532772 | 800..640 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 12532393..12532552 | 960..801 | 725 | 96.9 | Minus |
| 3L | 28110227 | 3L | 12532838..12532972 | 639..505 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 12533552..12533612 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:40:56 has no hits.
BS09740.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:41 Download gff for
BS09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf2-PA | 1..945 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:50 Download gff for
BS09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10620-PA | 1..945 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:45:26 Download gff for
BS09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf2-RA | 113..1057 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:10 Download gff for
BS09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf2-RA | 113..1057 | 17..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:10 Download gff for
BS09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12532392..12532552 | 801..962 | 97 | <- | Minus |
| 3L | 12532612..12532772 | 640..800 | 100 | <- | Minus |
| 3L | 12532838..12532971 | 506..639 | 100 | <- | Minus |
| 3L | 12533051..12533478 | 78..505 | 100 | <- | Minus |
| 3L | 12533552..12533612 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:45:26 Download gff for
BS09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12525492..12525652 | 801..962 | 97 | <- | Minus |
| arm_3L | 12525712..12525872 | 640..800 | 100 | <- | Minus |
| arm_3L | 12525938..12526071 | 506..639 | 100 | <- | Minus |
| arm_3L | 12526151..12526578 | 78..505 | 100 | <- | Minus |
| arm_3L | 12526652..12526712 | 17..77 | 100 | | Minus |
BS09740.complete Sequence
2492 bp assembled on 2010-05-10
GenBank Submission: KX806374
> BS09740.complete
GAAGTTATCAGTCGTCATGGCTAGCAGCCTCGTTTTTGTGGCTCTAGTCG
GCGCCTTATGTTTTACGCTCGCTAACGCACAACATCACTACGATGAGCAC
AAGACCACACGGATGGTGTGGTGCACCAAGAGCCAGGCGGAGCAGTACAA
ATGCCAGAACCTTACGGTGGCCATCGAGCGGGATCGGGCACTATTCGACG
AGGTGTTCCTCAATCTCACCTGCTTCATGGCCTACAGTGCGGATGAGTGC
ATCCATCACATTGATCGCGAGAAGGCACACATCACCACGCTGGATGCGGG
CGATGTCTTCACTGCTGGACGGTACAACTCCCTCATACCCATTATGCAGG
AGAAACTGGAGGGCGGCTTTGCGGACTATCAATCCGTAGCCGTGATCAAG
AAGGGATCTCTACCAGACTTGAACAATCTGCGCGACATGCGCAACAAGAG
GGTGTGCTTCCCCTGGGTGGGCAGCTTGGCCGGTTGGATTGTGCCCATTC
ACACGCTCCAAAGGGAGGGCGGCATGGAAGTGGTGGACTGCAACAACCAG
GTGAAGACGGCCGCCAGCTATTTCAATAATTCGTGTGCTGTGTACTCGCT
TTCCGACAAACACAATCCAATTGGCGACAACTCCGATAAACTTTGTACGC
TTTGCACTGGAAAGATACCCGGAGGACGCTGCTCATCTGCAGATCCCTAC
TTCGGCTACGAAGGCGCCTTCAAATGTCTGCTTGAAAAAGGAGATGTTGC
CTTCTTGCGCCATTCGACTGTGAATGAAATGCTGCAAACCACCGAATTCA
AGAACATAGCACCCGACACTTTTGAGCTGCTGTGTCGTGATGGTCGTCGT
GCCTCCATCAACGATTATCGCCAGTGTAATTGGGGCCAAGTGCCCGCCGA
TGCCATTGTCACATCTTCGGCTCGCAGCTTCAGCGATCGCAAGCAGTATC
AGCAGTTTTTGAAGCGCATTGCCGAGCTGTACTCCGATGGCACACGTGAT
GATCAGAGCAGGCAGGGAGGACAAAGCTTCAACAGCCGCAACAACATCAA
CGATCAGAATGCCTATGGCCAGTTCGATAATAATGATCCGTACAGAACGC
AGAATCAATACGATCAGTATCGCAGCGAACGATTGGACAGCAGTTTTGCA
GAGGAAAGAAACCAGCAGGACGGCACGAACACTTCCATACTCTATGAGAA
GTTCCGCATCTTCGAGTCGAAGCGCTATGGCAAGCCAAATTTGCTGTTCC
AGGATTCTAGTCGCGCTCTAACCGTGATTCCCGAAGATGATCAGTCATTT
ACCAAGTACCTAGGCCCTGCCATTAACTTTATCTACGGCATCCGTGAGTG
TCCAGTTCCAGCGATGACGCTTTGCGTGACTTCGGAGAATGAGCTTGATA
AATGCATCAAGATGAGGACTGCCTTGAAAGCTCACCTCCTGAAACCAGAA
CTCATCTGCAAGAAAATGCACTCCCACATCAACTGCATGCAGTTCATCGA
AGCGGGCAAAGCAGACATCTCCGTTTTCGATGCCGGCGATGTCTACACTG
GTGGCCTCAACTACGACCTGGTGCCCTTCATGTCGGAGGTGTACAATCTG
GGCGAGCCCGAGTATTATGTGGTTGCCGTGGCCAAGGAGGATGATCCCGA
TACGGAGCTAACTTACCTGAAGGGTAAGAATACCTGCCATACGGGCATTA
ACACCGCCGCTGGCTGGACATATCCGATGGCGCTTTTCATCTCGAACGGC
TGGATTCGTCCCTACGGATGCGATTCGGTTCGAGCTGCCGCGGAGTACTT
CACCAAGTCGTGCGTGCCGGGTGCCATTAGCAATGAGTACAACACCGGTG
TGCCCTACGACAGCATGTGCGATCTGTGTCATGGAACTAGCTATCGCTAT
TGTCGTCGCGATGCCTCCGAGGAATACTACGGGCACACGGGTGCATTCCG
TTGCCTCGTCGAGGGCGGCGGTCACGTGGCCTTCATGAAGCACACCACGG
TGATGGAAAGCACGGGCGGCAAACGCAAGGAATGGTGGGCCAGGAATGCC
CTAAACGATGACTTTGAGCTGCTCTGCACGGATGGTACTCGTGCCGAGAT
CCAGGACTACAAGCGCTGCAATCTGGGCAAGGTTAAGGCCAATGCTGTGG
TCACCCGCGGCGGAGTCAACTACAACGAGACCCAGATGAATGCCTACATC
AATCTGCTGACCTATGCCCAACAACTGTACGGTCGCAAGGAAGTGGACGC
CTTCAGTTTCAGCATGTTCTCCTCGCCGATCGGGCACTATGATCTGATCT
TCCAGGACGCCACGCGGCAGCTGCAAGTAATTCCGCCCAATAAGCGCAGG
TATGATGCCTATTTGGGCAGCGATTTTATGCGAGCACGCCGCATCACCGA
CTGCTATGCTGGTGCCTCCCAGTTGGCATTATCCGTGGGCCTGCTCCTCG
TGGGTTCGCTGGTTGCAATGCTCTAAAAGCTTTCTAGACCAT
BS09740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf2-RA | 2460 | CG10620-PA | 1..2460 | 17..2476 | 12300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf2-RA | 2884 | CG10620-RA | 113..2572 | 17..2476 | 12300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12530748..12531807 | 2476..1417 | 5300 | 100 | Minus |
| 3L | 28110227 | 3L | 12532100..12532552 | 1253..801 | 2265 | 100 | Minus |
| 3L | 28110227 | 3L | 12533051..12533479 | 505..77 | 2145 | 100 | Minus |
| 3L | 28110227 | 3L | 12531873..12532040 | 1417..1250 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 12532612..12532772 | 800..640 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 12532838..12532972 | 639..505 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 12533552..12533612 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:45:17 has no hits.
BS09740.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:14 Download gff for
BS09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf2-RA | 110..2567 | 17..2474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:36 Download gff for
BS09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf2-RA | 113..2570 | 17..2474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:20 Download gff for
BS09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf2-RA | 113..2570 | 17..2474 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:20 Download gff for
BS09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12532612..12532772 | 640..800 | 100 | <- | Minus |
| 3L | 12532838..12532971 | 506..639 | 100 | <- | Minus |
| 3L | 12533051..12533478 | 78..505 | 100 | <- | Minus |
| 3L | 12530750..12531806 | 1418..2474 | 100 | <- | Minus |
| 3L | 12531873..12532037 | 1253..1417 | 100 | <- | Minus |
| 3L | 12532101..12532552 | 801..1252 | 100 | <- | Minus |
| 3L | 12533552..12533612 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:36 Download gff for
BS09740.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12525712..12525872 | 640..800 | 100 | <- | Minus |
| arm_3L | 12525938..12526071 | 506..639 | 100 | <- | Minus |
| arm_3L | 12523850..12524906 | 1418..2474 | 100 | <- | Minus |
| arm_3L | 12524973..12525137 | 1253..1417 | 100 | <- | Minus |
| arm_3L | 12525201..12525652 | 801..1252 | 100 | <- | Minus |
| arm_3L | 12526151..12526578 | 78..505 | 100 | <- | Minus |
| arm_3L | 12526652..12526712 | 17..77 | 100 | | Minus |
BS09740.pep Sequence
Translation from 16 to 2475
> BS09740.pep
MASSLVFVALVGALCFTLANAQHHYDEHKTTRMVWCTKSQAEQYKCQNLT
VAIERDRALFDEVFLNLTCFMAYSADECIHHIDREKAHITTLDAGDVFTA
GRYNSLIPIMQEKLEGGFADYQSVAVIKKGSLPDLNNLRDMRNKRVCFPW
VGSLAGWIVPIHTLQREGGMEVVDCNNQVKTAASYFNNSCAVYSLSDKHN
PIGDNSDKLCTLCTGKIPGGRCSSADPYFGYEGAFKCLLEKGDVAFLRHS
TVNEMLQTTEFKNIAPDTFELLCRDGRRASINDYRQCNWGQVPADAIVTS
SARSFSDRKQYQQFLKRIAELYSDGTRDDQSRQGGQSFNSRNNINDQNAY
GQFDNNDPYRTQNQYDQYRSERLDSSFAEERNQQDGTNTSILYEKFRIFE
SKRYGKPNLLFQDSSRALTVIPEDDQSFTKYLGPAINFIYGIRECPVPAM
TLCVTSENELDKCIKMRTALKAHLLKPELICKKMHSHINCMQFIEAGKAD
ISVFDAGDVYTGGLNYDLVPFMSEVYNLGEPEYYVVAVAKEDDPDTELTY
LKGKNTCHTGINTAAGWTYPMALFISNGWIRPYGCDSVRAAAEYFTKSCV
PGAISNEYNTGVPYDSMCDLCHGTSYRYCRRDASEEYYGHTGAFRCLVEG
GGHVAFMKHTTVMESTGGKRKEWWARNALNDDFELLCTDGTRAEIQDYKR
CNLGKVKANAVVTRGGVNYNETQMNAYINLLTYAQQLYGRKEVDAFSFSM
FSSPIGHYDLIFQDATRQLQVIPPNKRRYDAYLGSDFMRARRITDCYAGA
SQLALSVGLLLVGSLVAML*
BS09740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf2-PA | 819 | CG10620-PA | 1..819 | 1..819 | 4385 | 100 | Plus |
| Tsf1-PC | 641 | CG6186-PC | 55..332 | 62..325 | 196 | 22 | Plus |
| Tsf1-PA | 641 | CG6186-PA | 55..332 | 62..325 | 196 | 22 | Plus |
| Tsf1-PC | 641 | CG6186-PC | 62..290 | 481..695 | 195 | 25.7 | Plus |
| Tsf1-PA | 641 | CG6186-PA | 62..290 | 481..695 | 195 | 25.7 | Plus |
