Clone BS09741 Report

Search the DGRC for BS09741

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG12262-RA
Protein status:BS09741.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09741.3prime Sequence

920 bp (867 high quality bases) assembled on 2006-04-19

> BS09741.3prime
ATGGTCTAGAAAGCTTTTAGGCTTGACCCTTAGCAGCCTCGTACATGTTT
CGGGAAATGATGAGGCGCTGGATCTGAGAAGTACCTTCGTAGATTTGGTA
GATCTTGGCATCACGCATCAGCTTCTCCACGGGATACTCGCTGTTGAAGC
CGTTGCCTCCAAAGATCTGGACGGCATCGGAGGCAATCTTGTTGGCCATA
TCGGCGGCATGGCACTTGGCAATGGAGGCATAGTAGCTGTTGCGGCGTCC
CTGGTCGATTTCCCAGGCGGAGAGACGCCACGCCAGACGGGATGTCTCCA
CACCGATGGCCATATCAGCCAGCATGAACTGCACAGCCTGGTGGTAAGCG
ATGGGCACGCCAAAGGTCTTGCGTTCCAGCGCGTATTTAAGAGCCTCATC
CAAGCAACGCTGGGCCAAACCCACAGCTCCGGCAGCAACTGGAGGACGCG
TCTTATCAAAGGTGCCCATGGCAATTTTGAAACCGGCACCCTCGCCAATC
AGCACATTTTCCTTGGGCACGCGCACATCCTCGAAGGTGATGCCACGCGT
GTCGGAGGCGCGCTGTCCCATGTTCAACTCCTTGCGGCCGGGCGTTAGTC
CGGGACTGTCGCGCTCCACAATGAACCCGGTGAAGGCCTTGCTGGGCGGG
CACTTGGGATCCGGATTGGTGCGGGCCAGCACAAAGTACCAGTTCGCCAC
ACCACCGTTGGTGATCCACATCTTCTGGCCGTTGATTACCCACTCATCAC
CCTTCTTCTCGGCGCGTGTCTTGATGCCGGACACATCGGATCCTGCTCCG
GGCTCTGTAACACAATAGGCGGCGACAAGTGGCTCCTCCAGCANGCGGCC
CAGGTACTTTTTCTTCTGTTCCCTTGTACCGGACAGGATCACAGGAGTTT
GGCCCAGACCACTAGCCTCT

BS09741.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-PA 1260 CG12262-RA 405..1260 872..17 4261 99.8 Minus
CG12262-PA 1260 CG12262-RA 357..400 920..877 220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-RA 1461 CG12262-RA 447..1350 920..17 4464 99.7 Minus
CG7457-RB 6335 CG7457-RB 4873..5757 17..901 4369 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7720477..7721361 901..17 4369 99.5 Minus
Blast to na_te.dros performed on 2015-02-06 16:14:43 has no hits.

BS09741.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:42 Download gff for BS09741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12262-PA 357..1260 17..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:51 Download gff for BS09741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12262-PA 357..1260 17..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:21:40 Download gff for BS09741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 447..1350 17..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:10:26 Download gff for BS09741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 447..1350 17..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:10:26 Download gff for BS09741.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7720398..7720416 902..920 100 -> Minus
3L 7720477..7721361 17..901 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:21:40 Download gff for BS09741.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7713498..7713516 902..920 100 -> Minus
arm_3L 7713577..7714461 17..901 99   Minus

BS09741.5prime Sequence

894 bp (776 high quality bases) assembled on 2006-04-19

> BS09741.5prime
GAAGTTATCAGTCGACATGGCGTTCCTCAACAAGCTTGCTGCGCCTGCCC
TGCGCCAGTTGGTGTCCCAAAGTCGCGCCTACGCCGCCGTGTCACACGTT
TCGCCCAATGGCACCTCTTTCGCACTCACCGAGGATCAGCTGCAGCTGCA
GGAACTGGCACGTAAGTTCACCCGTGAGGAGATCATCCCGGTGGCCGCCC
AGTACGACAAGAGCGGCGAGTACCCGTGGCCCATCATCAAGAAGGCCTGG
GAACTGGGCCTGATGAACAACCACATTCCTGCTGATATTGGTGGCCTGGA
TCTCGATGTGTTCACCACCTGCTTGTCGGCCGAGGAGTTGGCCTATGGCT
GCACTGGCATCATGACCGCCTTAGAGGCTAGTGGTCTGGGCCAAACTCCT
GTGATCCTGTCCGGTAACAAGGAACAGAAGAAAAAGTACCTGGGCCGCCT
GCTGGAGGAGCCACTTGTCGCCGCCTATTGTGTTACAGAGCCCGGAGCAG
GATCCGATGTGTCCGGCATCAAGACACGCGCCGAGAAGAAGGGTGATGAG
TGGGTAATCAACGGCCAGAAGATGTGGATCACCAACGGTGGTGTGGCGAA
CTGGTACTTTGTGCTGGCCCGCACCAATCCGGATCCCAAGTGCCCGCCCA
GCAAGGCCTTCACCGGGTTCATTGTGGAGCGCGACAGTCCCGGACTAACG
CCCGGCCGCAAGGAGTTGAACATGGGACAGCGCGCCTCCGACACGCGTGG
CATCACCTTCGAGGATGTGCGCGTGCCCAAGGAAAATGTGCTGATTGGCG
AGGGTGCCGGTTTCAAAATTGCCATGGGCACCTTTGATAAGACGCGTCCT
CCAGTTGCTGCCGGAGCTGTGGGTTTGGCCCAGCGTTGCTTGGA

BS09741.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-PA 1260 CG12262-RA 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-RA 1461 CG12262-RA 91..968 17..894 4390 100 Plus
CG7457-RB 6335 CG7457-RB 5255..5757 894..392 2515 100 Minus
CG7457-RB 6335 CG7457-RB 5818..6176 391..33 1795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7720477..7720979 392..894 2515 100 Plus
3L 28110227 3L 7720058..7720416 33..391 1795 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:21:12 has no hits.

BS09741.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:43 Download gff for BS09741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12262-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:53 Download gff for BS09741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12262-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:37:02 Download gff for BS09741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 84..967 9..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:23 Download gff for BS09741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 84..967 9..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:23 Download gff for BS09741.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7720060..7720416 35..391 100 -> Plus
3L 7720477..7720978 392..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:37:02 Download gff for BS09741.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7713160..7713516 35..391 100 -> Plus
arm_3L 7713577..7714078 392..893 100   Plus

BS09741.complete Sequence

1292 bp (1292 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636474

> BS09741.complete
GAAGTTATCAGTCGACATGGCGTTCCTCAACAAGCTTGCTGCGCCTGCCC
TGCGCCAGTTGGTGTCCCAAAGTCGCGCCTACGCCGCCGTGTCACACGTT
TCGCCCAATGGCACCTCTTTCGCACTCACCGAGGATCAGCTGCAGCTGCA
GGAACTGGCACGTAAGTTCACCCGTGAGGAGATCATCCCGGTGGCCGCCC
AGTACGACAAGAGCGGCGAGTACCCGTGGCCCATCATCAAGAAGGCCTGG
GAACTGGGCCTGATGAACAACCACATTCCTGCTGATATTGGTGGCCTGGA
TCTCGATGTGTTCACCACCTGCTTGTCGGCCGAGGAGTTGGCCTATGGCT
GCACTGGCATCATGACCGCCTTAGAGGCTAGTGGTCTGGGCCAAACTCCT
GTGATCCTGTCCGGTAACAAGGAACAGAAGAAAAAGTACCTGGGCCGCCT
GCTGGAGGAGCCACTTGTCGCCGCCTATTGTGTTACAGAGCCCGGAGCAG
GATCCGATGTGTCCGGCATCAAGACACGCGCCGAGAAGAAGGGTGATGAG
TGGGTAATCAACGGCCAGAAGATGTGGATCACCAACGGTGGTGTGGCGAA
CTGGTACTTTGTGCTGGCCCGCACCAATCCGGATCCCAAGTGCCCGCCCA
GCAAGGCCTTCACCGGGTTCATTGTGGAGCGCGACAGTCCCGGACTAACG
CCCGGCCGCAAGGAGTTGAACATGGGACAGCGCGCCTCCGACACGCGTGG
CATCACCTTCGAGGATGTGCGCGTGCCCAAGGAAAATGTGCTGATTGGCG
AGGGTGCCGGTTTCAAAATTGCCATGGGCACCTTTGATAAGACGCGTCCT
CCAGTTGCTGCCGGAGCTGTGGGTTTGGCCCAGCGTTGCTTGGATGAGGC
TCTTAAATACGCGCTGGAACGCAAGACCTTTGGCGTGCCCATCGCTTACC
ACCAGGCTGTGCAGTTCATGCTGGCTGATATGGCCATCGGTGTGGAGACA
TCCCGTCTGGCGTGGCGTCTCTCCGCCTGGGAAATCGACCAGGGACGCCG
CAACAGCTACTATGCCTCCATTGCCAAGTGCCATGCCGCCGATATGGCCA
ACAAGATTGCCTCCGATGCCGTCCAGATCTTTGGAGGCAACGGCTTCAAC
AGCGAGTATCCCGTGGAGAAGCTGATGCGTGATGCCAAGATCTACCAAAT
CTACGAAGGTACTTCTCAGATCCAGCGCCTCATCATTTCCCGAAACATGT
ACGAGGCTGCTAAGGGTCAAGCCTAAAAGCTTTCTAGACCAT

BS09741.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-RA 1260 CG12262-PA 1..1260 17..1276 6300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-RA 1461 CG12262-RA 91..1350 17..1276 6300 100 Plus
CG7457-RB 6335 CG7457-RB 4873..5757 1276..392 4425 100 Minus
CG7457-RB 6335 CG7457-RB 5818..6176 391..33 1795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7720477..7721361 392..1276 4425 100 Plus
3L 28110227 3L 7720058..7720416 33..391 1795 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:42:54 has no hits.

BS09741.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:01 Download gff for BS09741.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 1..1260 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:53 Download gff for BS09741.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 73..1339 9..1276 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:37:40 Download gff for BS09741.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 91..1348 17..1274 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:02 Download gff for BS09741.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 73..1339 9..1276 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:59 Download gff for BS09741.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 91..1348 17..1274 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:59 Download gff for BS09741.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7719440..7719457 17..34 100 -> Plus
3L 7720060..7720416 35..391 100 -> Plus
3L 7720477..7721359 392..1274 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:37:40 Download gff for BS09741.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7712540..7712557 17..34 100 -> Plus
arm_3L 7713160..7713516 35..391 100 -> Plus
arm_3L 7713577..7714459 392..1274 100   Plus

BS09741.pep Sequence

Translation from 16 to 1275

> BS09741.pep
MAFLNKLAAPALRQLVSQSRAYAAVSHVSPNGTSFALTEDQLQLQELARK
FTREEIIPVAAQYDKSGEYPWPIIKKAWELGLMNNHIPADIGGLDLDVFT
TCLSAEELAYGCTGIMTALEASGLGQTPVILSGNKEQKKKYLGRLLEEPL
VAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANWYFVL
ARTNPDPKCPPSKAFTGFIVERDSPGLTPGRKELNMGQRASDTRGITFED
VRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCLDEALKYAL
ERKTFGVPIAYHQAVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYA
SIAKCHAADMANKIASDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTS
QIQRLIISRNMYEAAKGQA*

BS09741.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-PA 419 CG12262-PA 1..419 1..419 2173 100 Plus
Arc42-PA 405 CG4703-PA 26..396 36..408 626 39.4 Plus
CG4860-PA 415 CG4860-PA 36..405 36..408 605 37.5 Plus
CG3902-PA 414 CG3902-PA 11..406 6..409 595 36.5 Plus
CG6638-PA 420 CG6638-PA 27..420 25..416 577 35.9 Plus