Clone Sequence Records
BS09741.3prime Sequence
920 bp (867 high quality bases) assembled on 2006-04-19
> BS09741.3prime
ATGGTCTAGAAAGCTTTTAGGCTTGACCCTTAGCAGCCTCGTACATGTTT
CGGGAAATGATGAGGCGCTGGATCTGAGAAGTACCTTCGTAGATTTGGTA
GATCTTGGCATCACGCATCAGCTTCTCCACGGGATACTCGCTGTTGAAGC
CGTTGCCTCCAAAGATCTGGACGGCATCGGAGGCAATCTTGTTGGCCATA
TCGGCGGCATGGCACTTGGCAATGGAGGCATAGTAGCTGTTGCGGCGTCC
CTGGTCGATTTCCCAGGCGGAGAGACGCCACGCCAGACGGGATGTCTCCA
CACCGATGGCCATATCAGCCAGCATGAACTGCACAGCCTGGTGGTAAGCG
ATGGGCACGCCAAAGGTCTTGCGTTCCAGCGCGTATTTAAGAGCCTCATC
CAAGCAACGCTGGGCCAAACCCACAGCTCCGGCAGCAACTGGAGGACGCG
TCTTATCAAAGGTGCCCATGGCAATTTTGAAACCGGCACCCTCGCCAATC
AGCACATTTTCCTTGGGCACGCGCACATCCTCGAAGGTGATGCCACGCGT
GTCGGAGGCGCGCTGTCCCATGTTCAACTCCTTGCGGCCGGGCGTTAGTC
CGGGACTGTCGCGCTCCACAATGAACCCGGTGAAGGCCTTGCTGGGCGGG
CACTTGGGATCCGGATTGGTGCGGGCCAGCACAAAGTACCAGTTCGCCAC
ACCACCGTTGGTGATCCACATCTTCTGGCCGTTGATTACCCACTCATCAC
CCTTCTTCTCGGCGCGTGTCTTGATGCCGGACACATCGGATCCTGCTCCG
GGCTCTGTAACACAATAGGCGGCGACAAGTGGCTCCTCCAGCANGCGGCC
CAGGTACTTTTTCTTCTGTTCCCTTGTACCGGACAGGATCACAGGAGTTT
GGCCCAGACCACTAGCCTCT
BS09741.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12262-PA | 1260 | CG12262-RA | 405..1260 | 872..17 | 4261 | 99.8 | Minus |
CG12262-PA | 1260 | CG12262-RA | 357..400 | 920..877 | 220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12262-RA | 1461 | CG12262-RA | 447..1350 | 920..17 | 4464 | 99.7 | Minus |
CG7457-RB | 6335 | CG7457-RB | 4873..5757 | 17..901 | 4369 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7720477..7721361 | 901..17 | 4369 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:14:43 has no hits.
BS09741.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:42 Download gff for
BS09741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-PA | 357..1260 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:51 Download gff for
BS09741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-PA | 357..1260 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:21:40 Download gff for
BS09741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-RA | 447..1350 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:10:26 Download gff for
BS09741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-RA | 447..1350 | 17..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:10:26 Download gff for
BS09741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7720398..7720416 | 902..920 | 100 | -> | Minus |
3L | 7720477..7721361 | 17..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:21:40 Download gff for
BS09741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7713498..7713516 | 902..920 | 100 | -> | Minus |
arm_3L | 7713577..7714461 | 17..901 | 99 | | Minus |
BS09741.5prime Sequence
894 bp (776 high quality bases) assembled on 2006-04-19
> BS09741.5prime
GAAGTTATCAGTCGACATGGCGTTCCTCAACAAGCTTGCTGCGCCTGCCC
TGCGCCAGTTGGTGTCCCAAAGTCGCGCCTACGCCGCCGTGTCACACGTT
TCGCCCAATGGCACCTCTTTCGCACTCACCGAGGATCAGCTGCAGCTGCA
GGAACTGGCACGTAAGTTCACCCGTGAGGAGATCATCCCGGTGGCCGCCC
AGTACGACAAGAGCGGCGAGTACCCGTGGCCCATCATCAAGAAGGCCTGG
GAACTGGGCCTGATGAACAACCACATTCCTGCTGATATTGGTGGCCTGGA
TCTCGATGTGTTCACCACCTGCTTGTCGGCCGAGGAGTTGGCCTATGGCT
GCACTGGCATCATGACCGCCTTAGAGGCTAGTGGTCTGGGCCAAACTCCT
GTGATCCTGTCCGGTAACAAGGAACAGAAGAAAAAGTACCTGGGCCGCCT
GCTGGAGGAGCCACTTGTCGCCGCCTATTGTGTTACAGAGCCCGGAGCAG
GATCCGATGTGTCCGGCATCAAGACACGCGCCGAGAAGAAGGGTGATGAG
TGGGTAATCAACGGCCAGAAGATGTGGATCACCAACGGTGGTGTGGCGAA
CTGGTACTTTGTGCTGGCCCGCACCAATCCGGATCCCAAGTGCCCGCCCA
GCAAGGCCTTCACCGGGTTCATTGTGGAGCGCGACAGTCCCGGACTAACG
CCCGGCCGCAAGGAGTTGAACATGGGACAGCGCGCCTCCGACACGCGTGG
CATCACCTTCGAGGATGTGCGCGTGCCCAAGGAAAATGTGCTGATTGGCG
AGGGTGCCGGTTTCAAAATTGCCATGGGCACCTTTGATAAGACGCGTCCT
CCAGTTGCTGCCGGAGCTGTGGGTTTGGCCCAGCGTTGCTTGGA
BS09741.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12262-PA | 1260 | CG12262-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12262-RA | 1461 | CG12262-RA | 91..968 | 17..894 | 4390 | 100 | Plus |
CG7457-RB | 6335 | CG7457-RB | 5255..5757 | 894..392 | 2515 | 100 | Minus |
CG7457-RB | 6335 | CG7457-RB | 5818..6176 | 391..33 | 1795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7720477..7720979 | 392..894 | 2515 | 100 | Plus |
3L | 28110227 | 3L | 7720058..7720416 | 33..391 | 1795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:21:12 has no hits.
BS09741.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:43 Download gff for
BS09741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:31:53 Download gff for
BS09741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:37:02 Download gff for
BS09741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-RA | 84..967 | 9..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:23 Download gff for
BS09741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-RA | 84..967 | 9..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:23 Download gff for
BS09741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7720060..7720416 | 35..391 | 100 | -> | Plus |
3L | 7720477..7720978 | 392..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:37:02 Download gff for
BS09741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7713160..7713516 | 35..391 | 100 | -> | Plus |
arm_3L | 7713577..7714078 | 392..893 | 100 | | Plus |
BS09741.complete Sequence
1292 bp (1292 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636474
> BS09741.complete
GAAGTTATCAGTCGACATGGCGTTCCTCAACAAGCTTGCTGCGCCTGCCC
TGCGCCAGTTGGTGTCCCAAAGTCGCGCCTACGCCGCCGTGTCACACGTT
TCGCCCAATGGCACCTCTTTCGCACTCACCGAGGATCAGCTGCAGCTGCA
GGAACTGGCACGTAAGTTCACCCGTGAGGAGATCATCCCGGTGGCCGCCC
AGTACGACAAGAGCGGCGAGTACCCGTGGCCCATCATCAAGAAGGCCTGG
GAACTGGGCCTGATGAACAACCACATTCCTGCTGATATTGGTGGCCTGGA
TCTCGATGTGTTCACCACCTGCTTGTCGGCCGAGGAGTTGGCCTATGGCT
GCACTGGCATCATGACCGCCTTAGAGGCTAGTGGTCTGGGCCAAACTCCT
GTGATCCTGTCCGGTAACAAGGAACAGAAGAAAAAGTACCTGGGCCGCCT
GCTGGAGGAGCCACTTGTCGCCGCCTATTGTGTTACAGAGCCCGGAGCAG
GATCCGATGTGTCCGGCATCAAGACACGCGCCGAGAAGAAGGGTGATGAG
TGGGTAATCAACGGCCAGAAGATGTGGATCACCAACGGTGGTGTGGCGAA
CTGGTACTTTGTGCTGGCCCGCACCAATCCGGATCCCAAGTGCCCGCCCA
GCAAGGCCTTCACCGGGTTCATTGTGGAGCGCGACAGTCCCGGACTAACG
CCCGGCCGCAAGGAGTTGAACATGGGACAGCGCGCCTCCGACACGCGTGG
CATCACCTTCGAGGATGTGCGCGTGCCCAAGGAAAATGTGCTGATTGGCG
AGGGTGCCGGTTTCAAAATTGCCATGGGCACCTTTGATAAGACGCGTCCT
CCAGTTGCTGCCGGAGCTGTGGGTTTGGCCCAGCGTTGCTTGGATGAGGC
TCTTAAATACGCGCTGGAACGCAAGACCTTTGGCGTGCCCATCGCTTACC
ACCAGGCTGTGCAGTTCATGCTGGCTGATATGGCCATCGGTGTGGAGACA
TCCCGTCTGGCGTGGCGTCTCTCCGCCTGGGAAATCGACCAGGGACGCCG
CAACAGCTACTATGCCTCCATTGCCAAGTGCCATGCCGCCGATATGGCCA
ACAAGATTGCCTCCGATGCCGTCCAGATCTTTGGAGGCAACGGCTTCAAC
AGCGAGTATCCCGTGGAGAAGCTGATGCGTGATGCCAAGATCTACCAAAT
CTACGAAGGTACTTCTCAGATCCAGCGCCTCATCATTTCCCGAAACATGT
ACGAGGCTGCTAAGGGTCAAGCCTAAAAGCTTTCTAGACCAT
BS09741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12262-RA | 1260 | CG12262-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12262-RA | 1461 | CG12262-RA | 91..1350 | 17..1276 | 6300 | 100 | Plus |
CG7457-RB | 6335 | CG7457-RB | 4873..5757 | 1276..392 | 4425 | 100 | Minus |
CG7457-RB | 6335 | CG7457-RB | 5818..6176 | 391..33 | 1795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7720477..7721361 | 392..1276 | 4425 | 100 | Plus |
3L | 28110227 | 3L | 7720058..7720416 | 33..391 | 1795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:42:54 has no hits.
BS09741.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:01 Download gff for
BS09741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-RA | 1..1260 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:53 Download gff for
BS09741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-RA | 73..1339 | 9..1276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:37:40 Download gff for
BS09741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-RA | 91..1348 | 17..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:02 Download gff for
BS09741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-RA | 73..1339 | 9..1276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:59 Download gff for
BS09741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12262-RA | 91..1348 | 17..1274 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:59 Download gff for
BS09741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7719440..7719457 | 17..34 | 100 | -> | Plus |
3L | 7720060..7720416 | 35..391 | 100 | -> | Plus |
3L | 7720477..7721359 | 392..1274 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:37:40 Download gff for
BS09741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7712540..7712557 | 17..34 | 100 | -> | Plus |
arm_3L | 7713160..7713516 | 35..391 | 100 | -> | Plus |
arm_3L | 7713577..7714459 | 392..1274 | 100 | | Plus |
BS09741.pep Sequence
Translation from 16 to 1275
> BS09741.pep
MAFLNKLAAPALRQLVSQSRAYAAVSHVSPNGTSFALTEDQLQLQELARK
FTREEIIPVAAQYDKSGEYPWPIIKKAWELGLMNNHIPADIGGLDLDVFT
TCLSAEELAYGCTGIMTALEASGLGQTPVILSGNKEQKKKYLGRLLEEPL
VAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANWYFVL
ARTNPDPKCPPSKAFTGFIVERDSPGLTPGRKELNMGQRASDTRGITFED
VRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCLDEALKYAL
ERKTFGVPIAYHQAVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYA
SIAKCHAADMANKIASDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTS
QIQRLIISRNMYEAAKGQA*
BS09741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12262-PA | 419 | CG12262-PA | 1..419 | 1..419 | 2173 | 100 | Plus |
Arc42-PA | 405 | CG4703-PA | 26..396 | 36..408 | 626 | 39.4 | Plus |
CG4860-PA | 415 | CG4860-PA | 36..405 | 36..408 | 605 | 37.5 | Plus |
CG3902-PA | 414 | CG3902-PA | 11..406 | 6..409 | 595 | 36.5 | Plus |
CG6638-PA | 420 | CG6638-PA | 27..420 | 25..416 | 577 | 35.9 | Plus |