Clone Sequence Records
BS09745.3prime Sequence
904 bp (843 high quality bases) assembled on 2006-04-19
> BS09745.3prime
ATGGTCTAGAAAGCTTTTACAATTTGTTTTCGCAAGGACATGATGCACTT
TCTCCTGATCCGGTGACAGCGGCATGGATCGCCTTGGCCACATATTCAAC
GTTGCCCTTATTCAGGCCACTCATGCTGATGCGTCCCGTCTTCAGCAGGT
AAATGTGGTACTGGTCGATCAGCACACGAACATGGCTCTCGTTCAGACCG
GTGTAGGAGAACATGCCGATCTGGTTGACAATGTGATCCCAGGTGCCGGG
GGTGCCCAAGGCAACCAGCTTGTCCCGCAAAGCTGTACGCATCTCGCGGA
TGCGGCTCGACATTGCCTGGATGGAGGCCATCCACTCCTTGCGCAACTCC
GGTGTGTTTAGGACTTTGGAAACGATGCGAGCTCCATACGCGGGCGGATT
CGAGTACTGTCCACGAATGAGCAGCGTCAGCTGAGAGTGAACCGCTGCCT
TGGTAGCACCATTCTTTTGCACCACAGCCAGATTGCCGGTACGTTCGCAG
TAGAGGCCAAAGTTCTTGGCGAACGACTGGCAGATGAAGAGCTCGAAGCC
ACGCTGCACGAAGTACCTAGCGGCCCAGGCATCGCGATCGGGATCACCAC
TGGCAAAGCCCTGGTAAGCCGAGTCGAACAGCGGGAACAACTTCTTCTTC
TCCATCAGATCGGCCAGCTCAGTCCACTGCTCCTGGGTGGGATCAATGCC
GGTGGGATTGTGGGCACAGGCGTGCAGAATGATCACAGCACCGGGCGGAG
CATCGTTCAGATCGGCCAGCATGTTCTTGAAGTCCAACTCGCGTTTATTT
TGGTCCCAGTAGCGGTACGATTTAACGGTCGTAAAGCCGGCATCGCAAAA
GATCTTGTGGTGATTCTCCCAGGTGGGGTTCGAGTAGTAAACCACATTGC
GATT
BS09745.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8430-PB | 1314 | Got1-RB | 427..1314 | 904..17 | 4440 | 100 | Minus |
CG8430-PA | 1251 | Got1-RA | 364..1251 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-RA | 1683 | CG8430-RA | 461..1348 | 904..17 | 4440 | 100 | Minus |
Got1-RB | 1682 | CG8430-RB | 460..1347 | 904..17 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16140706..16141593 | 904..17 | 4440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:43:54 has no hits.
BS09745.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:49 Download gff for
BS09745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-PB | 427..1314 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:00 Download gff for
BS09745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8430-PA | 364..1251 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:31:10 Download gff for
BS09745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 460..1347 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:33 Download gff for
BS09745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 460..1347 | 17..904 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:33 Download gff for
BS09745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16140706..16141593 | 17..904 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:31:10 Download gff for
BS09745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12028211..12029098 | 17..904 | 100 | | Minus |
BS09745.5prime Sequence
934 bp (870 high quality bases) assembled on 2006-04-19
> BS09745.5prime
GAAGTTATCAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCG
CCATCGAGGTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCC
AACAAGGTCAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCC
TTGGGTTTTGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATG
AGCAGGTTAACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACC
AATGCGGCCACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGA
GAATCGCGCCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCG
TTGCCGCCGATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTAC
TCGAACCCCACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTT
TACGACCGTTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGG
ACTTCAAGAACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTG
ATCATTCTGCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCA
GGAGCAGTGGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCC
CGCTGTTCGACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGC
GATGCCTGGGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCAT
CTGCCAGTCGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCA
ATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCT
CAGCTGACGCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGG
AGCTCGCATCGTTTTCAAAGTCCTAAACACACCG
BS09745.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8430-PB | 1314 | Got1-RB | 64..981 | 17..934 | 4565 | 99.8 | Plus |
CG8430-PA | 1251 | Got1-RA | 1..918 | 17..934 | 4565 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-RA | 1683 | CG8430-RA | 98..1015 | 17..934 | 4575 | 99.9 | Plus |
Got1-RB | 1682 | CG8430-RB | 97..1014 | 17..934 | 4575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16140634..16141260 | 308..934 | 3120 | 99.8 | Plus |
2R | 25286936 | 2R | 16140329..16140438 | 125..234 | 550 | 100 | Plus |
2R | 25286936 | 2R | 16138776..16138884 | 17..125 | 545 | 100 | Plus |
2R | 25286936 | 2R | 16140499..16140574 | 233..308 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:59:30 has no hits.
BS09745.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:50 Download gff for
BS09745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-PB | 58..981 | 12..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:02 Download gff for
BS09745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8430-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:23:21 Download gff for
BS09745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 91..1014 | 12..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:28:31 Download gff for
BS09745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 91..1014 | 12..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:28:31 Download gff for
BS09745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16138770..16138884 | 12..125 | 98 | -> | Plus |
2R | 16140330..16140437 | 126..233 | 100 | -> | Plus |
2R | 16140500..16140573 | 234..307 | 100 | -> | Plus |
2R | 16140634..16141260 | 308..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:23:21 Download gff for
BS09745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12026275..12026389 | 12..125 | 98 | -> | Plus |
arm_2R | 12027835..12027942 | 126..233 | 100 | -> | Plus |
arm_2R | 12028005..12028078 | 234..307 | 100 | -> | Plus |
arm_2R | 12028139..12028765 | 308..934 | 99 | | Plus |
BS09745.complete Sequence
1283 bp (1283 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636475
> BS09745.complete
GAAGTTATCAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCG
CCATCGAGGTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCC
AACAAGGTCAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCC
TTGGGTTTTGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATG
AGCAGGTTAACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACC
AATGCGGCCACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGA
GAATCGCGCCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCG
TTGCCGCCGATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTAC
TCGAACCCCACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTT
TACGACCGTTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGG
ACTTCAAGAACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTG
ATCATTCTGCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCA
GGAGCAGTGGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCC
CGCTGTTCGACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGC
GATGCCTGGGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCAT
CTGCCAGTCGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCA
ATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCT
CAGCTGACGCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGG
AGCTCGCATCGTTTCCAAAGTCCTAAACACACCGGAGTTGCGCAAGGAGT
GGATGGCCTCCATCCAGGCAATGTCGAGCCGCATCCGCGAGATGCGTACA
GCTTTGCGGGACAAGCTGGTTGCCTTGGGCACCCCCGGCACCTGGGATCA
CATTGTCAACCAGATCGGCATGTTCTCCTACACCGGTCTGAACGAGAGCC
ATGTTCGTGTGCTGATCGACCAGTACCACATTTACCTGCTGAAGACGGGA
CGCATCAGCATGAGTGGCCTGAATAAGGGCAACGTTGAATATGTGGCCAA
GGCGATCCATGCCGCTGTCACCGGATCAGGAGAAAGTGCATCATGTCCTT
GCGAAAACAAATTGTAAAAGCTTTCTAGACCAT
BS09745.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-RA | 1251 | CG8430-PA | 1..1251 | 17..1267 | 6255 | 100 | Plus |
Got1-RB | 1314 | CG8430-PB | 64..1314 | 17..1267 | 6255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-RA | 1683 | CG8430-RA | 98..1348 | 17..1267 | 6255 | 100 | Plus |
Got1-RB | 1682 | CG8430-RB | 97..1347 | 17..1267 | 6255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16140634..16141593 | 308..1267 | 4800 | 100 | Plus |
2R | 25286936 | 2R | 16140329..16140438 | 125..234 | 550 | 100 | Plus |
2R | 25286936 | 2R | 16138776..16138884 | 17..125 | 545 | 100 | Plus |
2R | 25286936 | 2R | 16140499..16140574 | 233..308 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:27:00 has no hits.
BS09745.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:30 Download gff for
BS09745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RA | 1..1251 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:30 Download gff for
BS09745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RA | 95..1351 | 12..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:06 Download gff for
BS09745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 97..1345 | 17..1265 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:31 Download gff for
BS09745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RA | 95..1351 | 12..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:46 Download gff for
BS09745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 97..1345 | 17..1265 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:46 Download gff for
BS09745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16138776..16138884 | 17..125 | 100 | -> | Plus |
2R | 16140330..16140437 | 126..233 | 100 | -> | Plus |
2R | 16140500..16140573 | 234..307 | 100 | -> | Plus |
2R | 16140634..16141591 | 308..1265 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:06 Download gff for
BS09745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12026281..12026389 | 17..125 | 100 | -> | Plus |
arm_2R | 12027835..12027942 | 126..233 | 100 | -> | Plus |
arm_2R | 12028005..12028078 | 234..307 | 100 | -> | Plus |
arm_2R | 12028139..12029096 | 308..1265 | 100 | | Plus |
BS09745.pep Sequence
Translation from 16 to 1266
> BS09745.pep
MSIYADVPKGPAIEVFALTQAFKDDSNPNKVNLSVGAYRTDAGVPWVLPV
VRKTEISIASDEQVNHEYLPVTGLETFTNAATELVLGADSPAIKENRAFG
VQTISGTGALRVAADFLHTQLNRNVVYYSNPTWENHHKIFCDAGFTTVKS
YRYWDQNKRELDFKNMLADLNDAPPGAVIILHACAHNPTGIDPTQEQWTE
LADLMEKKKLFPLFDSAYQGFASGDPDRDAWAARYFVQRGFELFICQSFA
KNFGLYCERTGNLAVVQKNGATKAAVHSQLTLLIRGQYSNPPAYGARIVS
KVLNTPELRKEWMASIQAMSSRIREMRTALRDKLVALGTPGTWDHIVNQI
GMFSYTGLNESHVRVLIDQYHIYLLKTGRISMSGLNKGNVEYVAKAIHAA
VTGSGESASCPCENKL*
BS09745.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-PA | 416 | CG8430-PA | 1..416 | 1..416 | 2185 | 100 | Plus |
Got1-PB | 437 | CG8430-PB | 22..437 | 1..416 | 2185 | 100 | Plus |
Got2-PA | 424 | CG4233-PA | 27..420 | 4..398 | 938 | 46.9 | Plus |
Got2-PB | 431 | CG4233-PB | 34..427 | 4..398 | 938 | 46.9 | Plus |