Clone BS09745 Report

Search the DGRC for BS09745

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptGot1-RA
Protein status:BS09745.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09745.3prime Sequence

904 bp (843 high quality bases) assembled on 2006-04-19

> BS09745.3prime
ATGGTCTAGAAAGCTTTTACAATTTGTTTTCGCAAGGACATGATGCACTT
TCTCCTGATCCGGTGACAGCGGCATGGATCGCCTTGGCCACATATTCAAC
GTTGCCCTTATTCAGGCCACTCATGCTGATGCGTCCCGTCTTCAGCAGGT
AAATGTGGTACTGGTCGATCAGCACACGAACATGGCTCTCGTTCAGACCG
GTGTAGGAGAACATGCCGATCTGGTTGACAATGTGATCCCAGGTGCCGGG
GGTGCCCAAGGCAACCAGCTTGTCCCGCAAAGCTGTACGCATCTCGCGGA
TGCGGCTCGACATTGCCTGGATGGAGGCCATCCACTCCTTGCGCAACTCC
GGTGTGTTTAGGACTTTGGAAACGATGCGAGCTCCATACGCGGGCGGATT
CGAGTACTGTCCACGAATGAGCAGCGTCAGCTGAGAGTGAACCGCTGCCT
TGGTAGCACCATTCTTTTGCACCACAGCCAGATTGCCGGTACGTTCGCAG
TAGAGGCCAAAGTTCTTGGCGAACGACTGGCAGATGAAGAGCTCGAAGCC
ACGCTGCACGAAGTACCTAGCGGCCCAGGCATCGCGATCGGGATCACCAC
TGGCAAAGCCCTGGTAAGCCGAGTCGAACAGCGGGAACAACTTCTTCTTC
TCCATCAGATCGGCCAGCTCAGTCCACTGCTCCTGGGTGGGATCAATGCC
GGTGGGATTGTGGGCACAGGCGTGCAGAATGATCACAGCACCGGGCGGAG
CATCGTTCAGATCGGCCAGCATGTTCTTGAAGTCCAACTCGCGTTTATTT
TGGTCCCAGTAGCGGTACGATTTAACGGTCGTAAAGCCGGCATCGCAAAA
GATCTTGTGGTGATTCTCCCAGGTGGGGTTCGAGTAGTAAACCACATTGC
GATT

BS09745.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8430-PB 1314 Got1-RB 427..1314 904..17 4440 100 Minus
CG8430-PA 1251 Got1-RA 364..1251 904..17 4440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-RA 1683 CG8430-RA 461..1348 904..17 4440 100 Minus
Got1-RB 1682 CG8430-RB 460..1347 904..17 4440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16140706..16141593 904..17 4440 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:43:54 has no hits.

BS09745.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:49 Download gff for BS09745.3prime
Subject Subject Range Query Range Percent Splice Strand
Got1-PB 427..1314 17..904 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:00 Download gff for BS09745.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8430-PA 364..1251 17..904 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:31:10 Download gff for BS09745.3prime
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 460..1347 17..904 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:33 Download gff for BS09745.3prime
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 460..1347 17..904 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:33 Download gff for BS09745.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16140706..16141593 17..904 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:31:10 Download gff for BS09745.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12028211..12029098 17..904 100   Minus

BS09745.5prime Sequence

934 bp (870 high quality bases) assembled on 2006-04-19

> BS09745.5prime
GAAGTTATCAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCG
CCATCGAGGTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCC
AACAAGGTCAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCC
TTGGGTTTTGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATG
AGCAGGTTAACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACC
AATGCGGCCACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGA
GAATCGCGCCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCG
TTGCCGCCGATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTAC
TCGAACCCCACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTT
TACGACCGTTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGG
ACTTCAAGAACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTG
ATCATTCTGCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCA
GGAGCAGTGGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCC
CGCTGTTCGACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGC
GATGCCTGGGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCAT
CTGCCAGTCGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCA
ATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCT
CAGCTGACGCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGG
AGCTCGCATCGTTTTCAAAGTCCTAAACACACCG

BS09745.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8430-PB 1314 Got1-RB 64..981 17..934 4565 99.8 Plus
CG8430-PA 1251 Got1-RA 1..918 17..934 4565 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-RA 1683 CG8430-RA 98..1015 17..934 4575 99.9 Plus
Got1-RB 1682 CG8430-RB 97..1014 17..934 4575 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16140634..16141260 308..934 3120 99.8 Plus
2R 25286936 2R 16140329..16140438 125..234 550 100 Plus
2R 25286936 2R 16138776..16138884 17..125 545 100 Plus
2R 25286936 2R 16140499..16140574 233..308 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:59:30 has no hits.

BS09745.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:50 Download gff for BS09745.5prime
Subject Subject Range Query Range Percent Splice Strand
Got1-PB 58..981 12..934 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:02 Download gff for BS09745.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8430-PA 1..918 17..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:23:21 Download gff for BS09745.5prime
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 91..1014 12..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:28:31 Download gff for BS09745.5prime
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 91..1014 12..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:28:31 Download gff for BS09745.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16138770..16138884 12..125 98 -> Plus
2R 16140330..16140437 126..233 100 -> Plus
2R 16140500..16140573 234..307 100 -> Plus
2R 16140634..16141260 308..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:23:21 Download gff for BS09745.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12026275..12026389 12..125 98 -> Plus
arm_2R 12027835..12027942 126..233 100 -> Plus
arm_2R 12028005..12028078 234..307 100 -> Plus
arm_2R 12028139..12028765 308..934 99   Plus

BS09745.complete Sequence

1283 bp (1283 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636475

> BS09745.complete
GAAGTTATCAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCG
CCATCGAGGTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCC
AACAAGGTCAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCC
TTGGGTTTTGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATG
AGCAGGTTAACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACC
AATGCGGCCACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGA
GAATCGCGCCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCG
TTGCCGCCGATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTAC
TCGAACCCCACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTT
TACGACCGTTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGG
ACTTCAAGAACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTG
ATCATTCTGCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCA
GGAGCAGTGGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCC
CGCTGTTCGACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGC
GATGCCTGGGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCAT
CTGCCAGTCGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCA
ATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCT
CAGCTGACGCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGG
AGCTCGCATCGTTTCCAAAGTCCTAAACACACCGGAGTTGCGCAAGGAGT
GGATGGCCTCCATCCAGGCAATGTCGAGCCGCATCCGCGAGATGCGTACA
GCTTTGCGGGACAAGCTGGTTGCCTTGGGCACCCCCGGCACCTGGGATCA
CATTGTCAACCAGATCGGCATGTTCTCCTACACCGGTCTGAACGAGAGCC
ATGTTCGTGTGCTGATCGACCAGTACCACATTTACCTGCTGAAGACGGGA
CGCATCAGCATGAGTGGCCTGAATAAGGGCAACGTTGAATATGTGGCCAA
GGCGATCCATGCCGCTGTCACCGGATCAGGAGAAAGTGCATCATGTCCTT
GCGAAAACAAATTGTAAAAGCTTTCTAGACCAT

BS09745.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-RA 1251 CG8430-PA 1..1251 17..1267 6255 100 Plus
Got1-RB 1314 CG8430-PB 64..1314 17..1267 6255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-RA 1683 CG8430-RA 98..1348 17..1267 6255 100 Plus
Got1-RB 1682 CG8430-RB 97..1347 17..1267 6255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16140634..16141593 308..1267 4800 100 Plus
2R 25286936 2R 16140329..16140438 125..234 550 100 Plus
2R 25286936 2R 16138776..16138884 17..125 545 100 Plus
2R 25286936 2R 16140499..16140574 233..308 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:27:00 has no hits.

BS09745.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:30 Download gff for BS09745.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 1..1251 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:30 Download gff for BS09745.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 95..1351 12..1267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:06 Download gff for BS09745.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 97..1345 17..1265 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:31 Download gff for BS09745.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 95..1351 12..1267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:46 Download gff for BS09745.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 97..1345 17..1265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:46 Download gff for BS09745.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16138776..16138884 17..125 100 -> Plus
2R 16140330..16140437 126..233 100 -> Plus
2R 16140500..16140573 234..307 100 -> Plus
2R 16140634..16141591 308..1265 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:06 Download gff for BS09745.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12026281..12026389 17..125 100 -> Plus
arm_2R 12027835..12027942 126..233 100 -> Plus
arm_2R 12028005..12028078 234..307 100 -> Plus
arm_2R 12028139..12029096 308..1265 100   Plus

BS09745.pep Sequence

Translation from 16 to 1266

> BS09745.pep
MSIYADVPKGPAIEVFALTQAFKDDSNPNKVNLSVGAYRTDAGVPWVLPV
VRKTEISIASDEQVNHEYLPVTGLETFTNAATELVLGADSPAIKENRAFG
VQTISGTGALRVAADFLHTQLNRNVVYYSNPTWENHHKIFCDAGFTTVKS
YRYWDQNKRELDFKNMLADLNDAPPGAVIILHACAHNPTGIDPTQEQWTE
LADLMEKKKLFPLFDSAYQGFASGDPDRDAWAARYFVQRGFELFICQSFA
KNFGLYCERTGNLAVVQKNGATKAAVHSQLTLLIRGQYSNPPAYGARIVS
KVLNTPELRKEWMASIQAMSSRIREMRTALRDKLVALGTPGTWDHIVNQI
GMFSYTGLNESHVRVLIDQYHIYLLKTGRISMSGLNKGNVEYVAKAIHAA
VTGSGESASCPCENKL*

BS09745.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-PA 416 CG8430-PA 1..416 1..416 2185 100 Plus
Got1-PB 437 CG8430-PB 22..437 1..416 2185 100 Plus
Got2-PA 424 CG4233-PA 27..420 4..398 938 46.9 Plus
Got2-PB 431 CG4233-PB 34..427 4..398 938 46.9 Plus