Clone BS09749 Report

Search the DGRC for BS09749

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptHel25E-RA
Protein status:BS09749.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09749.3prime Sequence

918 bp (729 high quality bases) assembled on 2006-04-19

> BS09749.3prime
ATGGTCTAGAAAGCTTCTAGCGTCCCTCAATGTATGTAGAGAGATCGATT
TCCTCGGGCAGCTCACTGATGTTCACATCGAAACGATCCTGTACTTCGTT
AAGTATCTTGGCGTCGTTCTCGTCCGAAACGAATGTGATTGCCAGTCCCT
TGGTGCCGAAGCGACCGGCACGGGCCACGCGATGCAAGTAGGTGTCGGAA
TCCTCGGGCATGTCGTAGTTGAACACGATGTTCACACGCTCGATGTCCAT
GCCGCGGCCAAAGAGATTGGTGGCCACCAGAATGCGCTTCTGGAAGTCCT
TGAACTGCTGGTAGCGATTCAGACGCTCCTCCTGGGTCATCCCACGATGG
ATGCCGATGGCGGGGAAGTTCTGCTCCGTCAGCAGCTGCGACAGAGCCAC
GCAACGTTGCACAGACTTCACAAAGATGACCACCTGATTGAACTCGAGCA
CGTCGAGCAGTTCGAACAGTTTCTTGTTCTTCTCGTTCTCCTTCAGATTG
ACGTAGTGCTGCTGCAGTCCGTGCAGCGTCAGCTTGGCCTCATCGTCGAC
GTAGACCTCCATGGGATCTTGCATGAACTTTTTGCAAACGGGACGAATGT
CCTTGCTCAATGTGGCAGAGAACATCATCACTTGTTTGCCGTGCGGCGTG
CTACGGAAAATCTCTTGAACGTCACGACGCATATCCAGCTGCTCCAGCAT
CTTGTCGCACTCGTCGAGCACAAAGTGCTTCAAAAGCTTCAGATTAAGTT
TCTTGTTGCGAATGAGGGCGAGAATTCGGCCAGGGGTGCCCACCACAATA
TGCGGGGTGCCGCTCTTGAGGGTCTCCTCGTCCTTTTGAATAGCCATTCC
GCCAAAGAAGACAGCCACCTTGACTGTGGGCATGTACTTGGAGAATCGCT
CATACTCCTTGCTGATCT

BS09749.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7269-PC 1275 Hel25E-RC 374..1275 918..17 4510 100 Minus
CG7269-PA 1275 Hel25E-RA 374..1275 918..17 4510 100 Minus
CG7269-PB 1275 Hel25E-RB 374..1275 918..17 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-RB 1657 CG7269-RB 451..1353 918..16 4515 100 Minus
Hel25E-RA 1596 CG7269-RA 561..1463 918..16 4515 100 Minus
Hel25E-RC 1760 CG7269-RC 554..1456 918..16 4515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5539707..5540111 31..435 2025 100 Plus
2L 23513712 2L 5541153..5541338 685..870 930 100 Plus
2L 23513712 2L 5540167..5540300 432..565 670 100 Plus
2L 23513712 2L 5540972..5541091 566..685 600 100 Plus
2L 23513712 2L 5541430..5541482 866..918 265 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:36:43 has no hits.

BS09749.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:53 Download gff for BS09749.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7269-PB 374..1275 17..918 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:06 Download gff for BS09749.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7269-PB 374..1275 17..918 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:09:26 Download gff for BS09749.3prime
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 554..1459 12..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:37:52 Download gff for BS09749.3prime
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 554..1459 12..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:37:52 Download gff for BS09749.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5540169..5540300 434..565 100 <- Plus
2L 5540972..5541090 566..684 100 <- Plus
2L 5541153..5541336 685..868 100 <- Plus
2L 5541433..5541482 869..918 100   Plus
2L 5539627..5539644 12..30 94 <- Plus
2L 5539707..5540109 31..433 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:09:26 Download gff for BS09749.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5540169..5540300 434..565 100 <- Plus
arm_2L 5540972..5541090 566..684 100 <- Plus
arm_2L 5539627..5539644 12..30 94 <- Plus
arm_2L 5539707..5540109 31..433 100 <- Plus
arm_2L 5541153..5541336 685..868 100 <- Plus
arm_2L 5541433..5541482 869..918 100   Plus

BS09749.5prime Sequence

814 bp (813 high quality bases) assembled on 2006-04-19

> BS09749.5prime
GAAGTTATCAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGG
ATGAGGAGCAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAG
AAGGATGTCAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGA
TTTCCTCCTGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCG
AGCATCCCTCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGC
ATGGACATCCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTT
CGTTCTGGCCACGCTGCAGCAGCTGGAGCCGTCGGACAACAACACCTGCC
ACGTCCTGGTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAG
GAGTATGAGCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTT
CTTTGGCGGAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCA
CCCCGCATATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGC
AACAAGAAACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTG
CGACAAGATGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTT
TCCGTAGCACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTG
AGCAAGGACATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGA
GGTCTACGTCGACGATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGC
ACTACGTCAATCTG

BS09749.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7269-PC 1275 Hel25E-RC 1..798 17..814 3990 100 Plus
CG7269-PA 1275 Hel25E-RA 1..798 17..814 3990 100 Plus
CG7269-PB 1275 Hel25E-RB 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-RB 1657 CG7269-RB 78..875 17..814 3990 100 Plus
Hel25E-RA 1596 CG7269-RA 188..985 17..814 3990 100 Plus
Hel25E-RC 1760 CG7269-RC 181..978 17..814 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5541430..5541657 442..215 1140 100 Minus
2L 23513712 2L 5541723..5541921 215..17 995 100 Minus
2L 23513712 2L 5541153..5541338 623..438 930 100 Minus
2L 23513712 2L 5540972..5541091 742..623 600 100 Minus
2L 23513712 2L 5540229..5540300 814..743 360 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:26:16 has no hits.

BS09749.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:55 Download gff for BS09749.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7269-PB 1..798 17..814 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:08 Download gff for BS09749.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7269-PB 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:44:55 Download gff for BS09749.5prime
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 178..978 14..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:47 Download gff for BS09749.5prime
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 178..978 14..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:47 Download gff for BS09749.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5541723..5541924 14..215 99   Minus
2L 5540229..5540300 743..814 100 <- Minus
2L 5540972..5541090 624..742 100 <- Minus
2L 5541153..5541336 440..623 100 <- Minus
2L 5541433..5541656 216..439 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:44:55 Download gff for BS09749.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5540229..5540300 743..814 100 <- Minus
arm_2L 5540972..5541090 624..742 100 <- Minus
arm_2L 5541153..5541336 440..623 100 <- Minus
arm_2L 5541433..5541656 216..439 100 <- Minus
arm_2L 5541723..5541924 14..215 99   Minus

BS09749.complete Sequence

1307 bp (1307 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636476

> BS09749.complete
GAAGTTATCAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGG
ATGAGGAGCAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAG
AAGGATGTCAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGA
TTTCCTCCTGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCG
AGCATCCCTCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGC
ATGGACATCCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTT
CGTTCTGGCCACGCTGCAGCAGCTGGAGCCGTCGGACAACAACACCTGCC
ACGTCCTGGTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAG
GAGTATGAGCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTT
CTTTGGCGGAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCA
CCCCGCATATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGC
AACAAGAAACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTG
CGACAAGATGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTT
TCCGTAGCACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTG
AGCAAGGACATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGA
GGTCTACGTCGACGATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGC
ACTACGTCAATCTGAAGGAGAACGAGAAGAACAAGAAACTGTTCGAACTG
CTCGACGTGCTCGAGTTCAATCAGGTGGTCATCTTTGTGAAGTCTGTGCA
ACGTTGCGTGGCTCTGTCGCAGCTGCTGACGGAGCAGAACTTCCCCGCCA
TCGGCATCCATCGTGGGATGACCCAGGAGGAGCGTCTGAATCGCTACCAG
CAGTTCAAGGACTTCCAGAAGCGCATTCTGGTGGCCACCAATCTCTTTGG
CCGCGGCATGGACATCGAGCGTGTGAACATCGTGTTCAACTACGACATGC
CCGAGGATTCCGACACCTACTTGCATCGCGTGGCCCGTGCCGGTCGCTTC
GGCACCAAGGGACTGGCAATCACATTCGTTTCGGACGAGAACGACGCCAA
GATACTTAACGAAGTACAGGATCGTTTCGATGTGAACATCAGTGAGCTGC
CCGAGGAAATCGATCTCTCTACATACATTGAGGGACGCTAGAAGCTTTCT
AGACCAT

BS09749.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-RB 1275 CG7269-PB 1..1275 17..1291 6375 100 Plus
Hel25E-RA 1275 CG7269-PA 1..1275 17..1291 6375 100 Plus
Hel25E-RC 1275 CG7269-PC 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-RB 1657 CG7269-RB 78..1353 17..1292 6380 100 Plus
Hel25E-RA 1596 CG7269-RA 188..1463 17..1292 6380 100 Plus
Hel25E-RC 1760 CG7269-RC 181..1456 17..1292 6380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5539707..5540111 1277..873 2025 100 Minus
2L 23513712 2L 5541430..5541657 442..215 1140 100 Minus
2L 23513712 2L 5541723..5541921 215..17 995 100 Minus
2L 23513712 2L 5541153..5541338 623..438 930 100 Minus
2L 23513712 2L 5540167..5540300 876..743 670 100 Minus
2L 23513712 2L 5540972..5541091 742..623 600 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:58:25 has no hits.

BS09749.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:50 Download gff for BS09749.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RB 1..1275 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:32 Download gff for BS09749.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RB 75..1356 14..1296 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:28 Download gff for BS09749.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 181..1455 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:50 Download gff for BS09749.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RB 75..1356 14..1296 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:27 Download gff for BS09749.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 181..1455 17..1291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:27 Download gff for BS09749.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5541723..5541921 17..215 100   Minus
2L 5540169..5540300 743..874 100 <- Minus
2L 5540972..5541090 624..742 100 <- Minus
2L 5541153..5541336 440..623 100 <- Minus
2L 5541433..5541656 216..439 100 <- Minus
2L 5539707..5540109 875..1277 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:28 Download gff for BS09749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5539707..5540109 875..1277 100 <- Minus
arm_2L 5540169..5540300 743..874 100 <- Minus
arm_2L 5540972..5541090 624..742 100 <- Minus
arm_2L 5541153..5541336 440..623 100 <- Minus
arm_2L 5541433..5541656 216..439 100 <- Minus
arm_2L 5541723..5541921 17..215 100   Minus

BS09749.pep Sequence

Translation from 16 to 1290

> BS09749.pep
MADNDDLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKP
EILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL
QQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMA
IQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLE
QLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDD
EAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVAL
SQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDI
ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV
QDRFDVNISELPEEIDLSTYIEGR*

BS09749.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-PB 424 CG7269-PB 1..424 1..424 2189 100 Plus
Hel25E-PA 424 CG7269-PA 1..424 1..424 2189 100 Plus
Hel25E-PC 424 CG7269-PC 1..424 1..424 2189 100 Plus
Hel25E-PD 305 CG7269-PD 1..242 1..242 1258 100 Plus
eIF-4a-PF 403 CG9075-PF 17..399 27..415 691 38.7 Plus