Clone Sequence Records
BS09749.3prime Sequence
918 bp (729 high quality bases) assembled on 2006-04-19
> BS09749.3prime
ATGGTCTAGAAAGCTTCTAGCGTCCCTCAATGTATGTAGAGAGATCGATT
TCCTCGGGCAGCTCACTGATGTTCACATCGAAACGATCCTGTACTTCGTT
AAGTATCTTGGCGTCGTTCTCGTCCGAAACGAATGTGATTGCCAGTCCCT
TGGTGCCGAAGCGACCGGCACGGGCCACGCGATGCAAGTAGGTGTCGGAA
TCCTCGGGCATGTCGTAGTTGAACACGATGTTCACACGCTCGATGTCCAT
GCCGCGGCCAAAGAGATTGGTGGCCACCAGAATGCGCTTCTGGAAGTCCT
TGAACTGCTGGTAGCGATTCAGACGCTCCTCCTGGGTCATCCCACGATGG
ATGCCGATGGCGGGGAAGTTCTGCTCCGTCAGCAGCTGCGACAGAGCCAC
GCAACGTTGCACAGACTTCACAAAGATGACCACCTGATTGAACTCGAGCA
CGTCGAGCAGTTCGAACAGTTTCTTGTTCTTCTCGTTCTCCTTCAGATTG
ACGTAGTGCTGCTGCAGTCCGTGCAGCGTCAGCTTGGCCTCATCGTCGAC
GTAGACCTCCATGGGATCTTGCATGAACTTTTTGCAAACGGGACGAATGT
CCTTGCTCAATGTGGCAGAGAACATCATCACTTGTTTGCCGTGCGGCGTG
CTACGGAAAATCTCTTGAACGTCACGACGCATATCCAGCTGCTCCAGCAT
CTTGTCGCACTCGTCGAGCACAAAGTGCTTCAAAAGCTTCAGATTAAGTT
TCTTGTTGCGAATGAGGGCGAGAATTCGGCCAGGGGTGCCCACCACAATA
TGCGGGGTGCCGCTCTTGAGGGTCTCCTCGTCCTTTTGAATAGCCATTCC
GCCAAAGAAGACAGCCACCTTGACTGTGGGCATGTACTTGGAGAATCGCT
CATACTCCTTGCTGATCT
BS09749.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7269-PC | 1275 | Hel25E-RC | 374..1275 | 918..17 | 4510 | 100 | Minus |
CG7269-PA | 1275 | Hel25E-RA | 374..1275 | 918..17 | 4510 | 100 | Minus |
CG7269-PB | 1275 | Hel25E-RB | 374..1275 | 918..17 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-RB | 1657 | CG7269-RB | 451..1353 | 918..16 | 4515 | 100 | Minus |
Hel25E-RA | 1596 | CG7269-RA | 561..1463 | 918..16 | 4515 | 100 | Minus |
Hel25E-RC | 1760 | CG7269-RC | 554..1456 | 918..16 | 4515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5539707..5540111 | 31..435 | 2025 | 100 | Plus |
2L | 23513712 | 2L | 5541153..5541338 | 685..870 | 930 | 100 | Plus |
2L | 23513712 | 2L | 5540167..5540300 | 432..565 | 670 | 100 | Plus |
2L | 23513712 | 2L | 5540972..5541091 | 566..685 | 600 | 100 | Plus |
2L | 23513712 | 2L | 5541430..5541482 | 866..918 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:36:43 has no hits.
BS09749.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:53 Download gff for
BS09749.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7269-PB | 374..1275 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:06 Download gff for
BS09749.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7269-PB | 374..1275 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:09:26 Download gff for
BS09749.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 554..1459 | 12..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:37:52 Download gff for
BS09749.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 554..1459 | 12..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:37:52 Download gff for
BS09749.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5540169..5540300 | 434..565 | 100 | <- | Plus |
2L | 5540972..5541090 | 566..684 | 100 | <- | Plus |
2L | 5541153..5541336 | 685..868 | 100 | <- | Plus |
2L | 5541433..5541482 | 869..918 | 100 | | Plus |
2L | 5539627..5539644 | 12..30 | 94 | <- | Plus |
2L | 5539707..5540109 | 31..433 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:09:26 Download gff for
BS09749.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5540169..5540300 | 434..565 | 100 | <- | Plus |
arm_2L | 5540972..5541090 | 566..684 | 100 | <- | Plus |
arm_2L | 5539627..5539644 | 12..30 | 94 | <- | Plus |
arm_2L | 5539707..5540109 | 31..433 | 100 | <- | Plus |
arm_2L | 5541153..5541336 | 685..868 | 100 | <- | Plus |
arm_2L | 5541433..5541482 | 869..918 | 100 | | Plus |
BS09749.5prime Sequence
814 bp (813 high quality bases) assembled on 2006-04-19
> BS09749.5prime
GAAGTTATCAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGG
ATGAGGAGCAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAG
AAGGATGTCAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGA
TTTCCTCCTGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCG
AGCATCCCTCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGC
ATGGACATCCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTT
CGTTCTGGCCACGCTGCAGCAGCTGGAGCCGTCGGACAACAACACCTGCC
ACGTCCTGGTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAG
GAGTATGAGCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTT
CTTTGGCGGAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCA
CCCCGCATATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGC
AACAAGAAACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTG
CGACAAGATGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTT
TCCGTAGCACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTG
AGCAAGGACATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGA
GGTCTACGTCGACGATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGC
ACTACGTCAATCTG
BS09749.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7269-PC | 1275 | Hel25E-RC | 1..798 | 17..814 | 3990 | 100 | Plus |
CG7269-PA | 1275 | Hel25E-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
CG7269-PB | 1275 | Hel25E-RB | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-RB | 1657 | CG7269-RB | 78..875 | 17..814 | 3990 | 100 | Plus |
Hel25E-RA | 1596 | CG7269-RA | 188..985 | 17..814 | 3990 | 100 | Plus |
Hel25E-RC | 1760 | CG7269-RC | 181..978 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5541430..5541657 | 442..215 | 1140 | 100 | Minus |
2L | 23513712 | 2L | 5541723..5541921 | 215..17 | 995 | 100 | Minus |
2L | 23513712 | 2L | 5541153..5541338 | 623..438 | 930 | 100 | Minus |
2L | 23513712 | 2L | 5540972..5541091 | 742..623 | 600 | 100 | Minus |
2L | 23513712 | 2L | 5540229..5540300 | 814..743 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:26:16 has no hits.
BS09749.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:18:55 Download gff for
BS09749.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7269-PB | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:08 Download gff for
BS09749.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7269-PB | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:44:55 Download gff for
BS09749.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 178..978 | 14..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:47 Download gff for
BS09749.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 178..978 | 14..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:47 Download gff for
BS09749.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5541723..5541924 | 14..215 | 99 | | Minus |
2L | 5540229..5540300 | 743..814 | 100 | <- | Minus |
2L | 5540972..5541090 | 624..742 | 100 | <- | Minus |
2L | 5541153..5541336 | 440..623 | 100 | <- | Minus |
2L | 5541433..5541656 | 216..439 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:44:55 Download gff for
BS09749.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5540229..5540300 | 743..814 | 100 | <- | Minus |
arm_2L | 5540972..5541090 | 624..742 | 100 | <- | Minus |
arm_2L | 5541153..5541336 | 440..623 | 100 | <- | Minus |
arm_2L | 5541433..5541656 | 216..439 | 100 | <- | Minus |
arm_2L | 5541723..5541924 | 14..215 | 99 | | Minus |
BS09749.complete Sequence
1307 bp (1307 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636476
> BS09749.complete
GAAGTTATCAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGG
ATGAGGAGCAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAG
AAGGATGTCAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGA
TTTCCTCCTGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCG
AGCATCCCTCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGC
ATGGACATCCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTT
CGTTCTGGCCACGCTGCAGCAGCTGGAGCCGTCGGACAACAACACCTGCC
ACGTCCTGGTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAG
GAGTATGAGCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTT
CTTTGGCGGAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCA
CCCCGCATATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGC
AACAAGAAACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTG
CGACAAGATGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTT
TCCGTAGCACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTG
AGCAAGGACATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGA
GGTCTACGTCGACGATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGC
ACTACGTCAATCTGAAGGAGAACGAGAAGAACAAGAAACTGTTCGAACTG
CTCGACGTGCTCGAGTTCAATCAGGTGGTCATCTTTGTGAAGTCTGTGCA
ACGTTGCGTGGCTCTGTCGCAGCTGCTGACGGAGCAGAACTTCCCCGCCA
TCGGCATCCATCGTGGGATGACCCAGGAGGAGCGTCTGAATCGCTACCAG
CAGTTCAAGGACTTCCAGAAGCGCATTCTGGTGGCCACCAATCTCTTTGG
CCGCGGCATGGACATCGAGCGTGTGAACATCGTGTTCAACTACGACATGC
CCGAGGATTCCGACACCTACTTGCATCGCGTGGCCCGTGCCGGTCGCTTC
GGCACCAAGGGACTGGCAATCACATTCGTTTCGGACGAGAACGACGCCAA
GATACTTAACGAAGTACAGGATCGTTTCGATGTGAACATCAGTGAGCTGC
CCGAGGAAATCGATCTCTCTACATACATTGAGGGACGCTAGAAGCTTTCT
AGACCAT
BS09749.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-RB | 1275 | CG7269-PB | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Hel25E-RA | 1275 | CG7269-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Hel25E-RC | 1275 | CG7269-PC | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-RB | 1657 | CG7269-RB | 78..1353 | 17..1292 | 6380 | 100 | Plus |
Hel25E-RA | 1596 | CG7269-RA | 188..1463 | 17..1292 | 6380 | 100 | Plus |
Hel25E-RC | 1760 | CG7269-RC | 181..1456 | 17..1292 | 6380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5539707..5540111 | 1277..873 | 2025 | 100 | Minus |
2L | 23513712 | 2L | 5541430..5541657 | 442..215 | 1140 | 100 | Minus |
2L | 23513712 | 2L | 5541723..5541921 | 215..17 | 995 | 100 | Minus |
2L | 23513712 | 2L | 5541153..5541338 | 623..438 | 930 | 100 | Minus |
2L | 23513712 | 2L | 5540167..5540300 | 876..743 | 670 | 100 | Minus |
2L | 23513712 | 2L | 5540972..5541091 | 742..623 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:25 has no hits.
BS09749.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:50 Download gff for
BS09749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RB | 1..1275 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:32 Download gff for
BS09749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RB | 75..1356 | 14..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:28 Download gff for
BS09749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 181..1455 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:50 Download gff for
BS09749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RB | 75..1356 | 14..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:27 Download gff for
BS09749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 181..1455 | 17..1291 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:27 Download gff for
BS09749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5541723..5541921 | 17..215 | 100 | | Minus |
2L | 5540169..5540300 | 743..874 | 100 | <- | Minus |
2L | 5540972..5541090 | 624..742 | 100 | <- | Minus |
2L | 5541153..5541336 | 440..623 | 100 | <- | Minus |
2L | 5541433..5541656 | 216..439 | 100 | <- | Minus |
2L | 5539707..5540109 | 875..1277 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:28 Download gff for
BS09749.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5539707..5540109 | 875..1277 | 100 | <- | Minus |
arm_2L | 5540169..5540300 | 743..874 | 100 | <- | Minus |
arm_2L | 5540972..5541090 | 624..742 | 100 | <- | Minus |
arm_2L | 5541153..5541336 | 440..623 | 100 | <- | Minus |
arm_2L | 5541433..5541656 | 216..439 | 100 | <- | Minus |
arm_2L | 5541723..5541921 | 17..215 | 100 | | Minus |
BS09749.pep Sequence
Translation from 16 to 1290
> BS09749.pep
MADNDDLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKP
EILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL
QQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMA
IQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLE
QLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDD
EAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVAL
SQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDI
ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV
QDRFDVNISELPEEIDLSTYIEGR*
BS09749.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-PB | 424 | CG7269-PB | 1..424 | 1..424 | 2189 | 100 | Plus |
Hel25E-PA | 424 | CG7269-PA | 1..424 | 1..424 | 2189 | 100 | Plus |
Hel25E-PC | 424 | CG7269-PC | 1..424 | 1..424 | 2189 | 100 | Plus |
Hel25E-PD | 305 | CG7269-PD | 1..242 | 1..242 | 1258 | 100 | Plus |
eIF-4a-PF | 403 | CG9075-PF | 17..399 | 27..415 | 691 | 38.7 | Plus |