Clone Sequence Records
BS09754.3prime Sequence
836 bp (835 high quality bases) assembled on 2006-04-19
> BS09754.3prime
ATGGTCTAGAAAGCTTTTAGTTGGCGGGCTCGGTGACGCGGTGCACCTGA
AGCACGGCCACAGCCTCCTCCACCTTGGCCTTAAGGGCCTCCTGATCCTC
GATCATGTGCAAGAGCTCAGAGTTTTCGATCTCCAACAACATGCCGGTGA
TCTTACCAGCCAAATTGGCGTGCATATGCTCAATCATCGGATACAGACGC
TCGCCCAGGATCTGTTTCTGCTCCTGCGGCTTGGCGTTGGCCAGCAACGA
GGCAATGAGCTTCTCAGAATTCTTTCCTTGCAATTGCTGTGGAATTGGCT
GGGTCTGATGCAACTGTGGCACTGGAGGATTGCGCATGTTTGAGGTGTAC
TTATAGTTGGAAGTACGCTGCTGGGCACCGCCAGCGATTTGGGCTCCGGG
GATCTGCATGTTGGGTGCTGCAGTTTGCTGGCCAGTAATAGCGCGTGCTC
CAGTGTTGCGCATGTTGTTAGCCGCAGCAGCGGCGGCATGTGTGCCCTGC
ACCTGAGGCTGTGCCCCGCGAGCGCCAGCAGCAGCCGAACGGAACTGAGT
GGGCACCGCACCGGCTGTGCCCTGGAAGCCACCAGCAGCGGCAGCTCCGG
CCTGGACACCCTGTATGGCTGCTGGGGGACGCACCTGGGGCACCCAGCGG
GGTGTGTTTCTCATCTGAGTGGCCACCTGGGAACCGAAGAAACGCTGATT
TGACGGAAGGGTCGGCACAAAGAAGCCGCTAGCCGCGTTGGGCTGGTAGA
TCTGTCCCAGCTGCTGCATACGCATGCCGGTCATGTGACGCATGTACTGC
GAGGCGAGATGAGCCTTGCGCTCCTCCTTCCTTTGG
BS09754.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5119-PE | 1905 | pAbp-RE | 1086..1905 | 836..17 | 4100 | 100 | Minus |
| CG5119-PA | 1905 | pAbp-RA | 1086..1905 | 836..17 | 4100 | 100 | Minus |
| CG5119-PF | 1905 | pAbp-RF | 1086..1905 | 836..17 | 4100 | 100 | Minus |
| CG5119-PB | 1905 | pAbp-RB | 1086..1905 | 836..17 | 4100 | 100 | Minus |
| CG5119-PD | 1905 | pAbp-RD | 1086..1905 | 836..17 | 4100 | 100 | Minus |
| CG5119-PG | 1905 | pAbp-RG | 1086..1905 | 836..17 | 4100 | 100 | Minus |
| CG5119-PH | 1905 | pAbp-RH | 1086..1905 | 836..17 | 4100 | 100 | Minus |
| CG5119-PC | 1905 | pAbp-RC | 1086..1905 | 836..17 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 2433 | CG5119-RA | 1283..2102 | 836..17 | 4100 | 100 | Minus |
| pAbp-RB | 3870 | CG5119-RB | 1147..1966 | 836..17 | 4100 | 100 | Minus |
| pAbp-RC | 3127 | CG5119-RC | 1360..2179 | 836..17 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18144332..18144897 | 836..271 | 2830 | 100 | Minus |
| 2R | 25286936 | 2R | 18144967..18145220 | 270..17 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:38:49 has no hits.
BS09754.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:00 Download gff for
BS09754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-PA | 1086..1905 | 17..836 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:15 Download gff for
BS09754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5119-PC | 1086..1905 | 17..836 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:45:00 Download gff for
BS09754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 1360..2182 | 12..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:01:03 Download gff for
BS09754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 1360..2182 | 12..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:01:03 Download gff for
BS09754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18144332..18144897 | 271..836 | 100 | -> | Minus |
| 2R | 18144967..18145223 | 12..270 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:45:00 Download gff for
BS09754.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14031837..14032402 | 271..836 | 100 | -> | Minus |
| arm_2R | 14032472..14032728 | 12..270 | 99 | | Minus |
BS09754.5prime Sequence
989 bp (847 high quality bases) assembled on 2006-04-19
> BS09754.5prime
GAAGTTATCAGTCGACATGGCTTCTCTATACGTCGGTGATCTCCCACAGG
ACGTCAACGAATCGGGACTTTTTGACAAGTTCTCGTCTGCTGGTCCAGTG
CTGTCCATTCGTGTCTGCCGCGATGTGATTACCCGTCGCTCGTTGGGCTA
TGCCTACGTCAACTTCCAGCAGCCAGCCGATGCTGAGCGTGCTTTGGACA
CCATGAACTTTGACCTGGTTCGCAACAAGCCCATTCGCATTATGTGGTCT
CAGCGTGATCCTTCTCTTCGTCGCTCAGGTGTGGGCAACGTGTTCATCAA
GAACTTAGATAGGGCCATCGACAACAAGGCAATCTACGACACTTTCTCCG
CCTTCGGCAACATTTTAAGCTGCAAGGTAGCCACCGATGAAAAGGGCAAC
TCAAAGGGCTATGGATTCGTCCACTTCGAGACCGAGGAGGCCGCAAACAC
GTCCATCGACAAAGTCAATGGCATGTTGCTCAACGGCAAGAAGGTCTACG
TGGGTAAGTTCATCCCGCGCAAGGAGCGCGAGAAGGAGCTGGGCGAGAAG
GCTAAGCTCTTCACCAATGTATATGTGAAGAACTTCACTGAGGATTTCGA
CGATGAAAAACTGAAGGAATTCTTTGAGCCCTACGGCAAGATAACCAGCT
ACAAGGTCATGTCCAAGGAGGATGGCAAGAGCAAGGGCTTCGGATTCGTT
GCATTCGAGACAACAGAGGCTGCTGAGGCGGCCGTTCAGGCTCTCAATGG
CAAGGACATGGGAGAGGGCAAGTCCCTGTACGTGGCTCGTGCCCAGAAGA
AGGCCGAACGCCAGCAGGAGCTGAAGCGCAAGTTCGAGGAACTGAAGCAG
AAGCGTCACGAGTCTGTGTTCGGCGTTAACTTGTACGTTAAGAACCTGGA
CGACACAATCGATGACGATCGTCTGCGCATCGCGTTCTCTCCATACGGCA
ACATCACATCGGCCAAAGTCATGACCGATGAAGAAGGTC
BS09754.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5119-PE | 1905 | pAbp-RE | 1..965 | 17..981 | 4800 | 99.8 | Plus |
| CG5119-PA | 1905 | pAbp-RA | 1..965 | 17..981 | 4800 | 99.8 | Plus |
| CG5119-PF | 1905 | pAbp-RF | 1..965 | 17..981 | 4800 | 99.8 | Plus |
| CG5119-PB | 1905 | pAbp-RB | 1..965 | 17..981 | 4800 | 99.8 | Plus |
| CG5119-PD | 1905 | pAbp-RD | 1..965 | 17..981 | 4800 | 99.8 | Plus |
| CG5119-PG | 1905 | pAbp-RG | 1..965 | 17..981 | 4800 | 99.8 | Plus |
| CG5119-PH | 1905 | pAbp-RH | 1..965 | 17..981 | 4800 | 99.8 | Plus |
| CG5119-PC | 1905 | pAbp-RC | 1..965 | 17..981 | 4800 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 2433 | CG5119-RA | 198..1170 | 17..989 | 4820 | 99.7 | Plus |
| pAbp-RB | 3870 | CG5119-RB | 62..1034 | 17..989 | 4820 | 99.7 | Plus |
| pAbp-RC | 3127 | CG5119-RC | 275..1247 | 17..989 | 4820 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18143412..18144219 | 182..989 | 3995 | 99.6 | Plus |
| 2R | 25286936 | 2R | 18141507..18141677 | 17..187 | 840 | 99.4 | Plus |
| 2R | 25286936 | 2R | 24524945..24525124 | 475..296 | 225 | 75 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:55:05 has no hits.
BS09754.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:01 Download gff for
BS09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-PA | 1..973 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:17 Download gff for
BS09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5119-PC | 1..973 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:56:44 Download gff for
BS09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..1247 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:32 Download gff for
BS09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..1247 | 17..989 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:32 Download gff for
BS09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18141507..18141672 | 17..182 | 100 | -> | Plus |
| 2R | 18143413..18144219 | 183..989 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:56:44 Download gff for
BS09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14029012..14029177 | 17..182 | 100 | -> | Plus |
| arm_2R | 14030918..14031724 | 183..989 | 99 | | Plus |
BS09754.complete Sequence
1937 bp assembled on 2009-08-26
GenBank Submission: KX804273
> BS09754.complete
GAAGTTATCAGTCGACATGGCTTCTCTATACGTCGGTGATCTCCCACAGG
ACGTCAACGAATCGGGACTTTTTGACAAGTTCTCGTCTGCTGGTCCAGTG
CTGTCCATTCGTGTCTGCCGCGATGTGATTACCCGTCGCTCGTTGGGCTA
TGCCTACGTCAACTTCCAGCAGCCAGCCGATGCTGAGCGTGCTTTGGACA
CCATGAACTTTGACCTGGTTCGCAACAAGCCCATTCGCATTATGTGGTCT
CAGCGTGATCCTTCTCTTCGTCGCTCAGGTGTGGGCAACGTGTTCATCAA
GAACTTAGATAGGGCCATCGACAACAAGGCAATCTACGACACTTTCTCCG
CCTTCGGCAACATTTTAAGCTGCAAGGTAGCCACCGATGAAAAGGGCAAC
TCAAAGGGCTATGGATTCGTCCACTTCGAGACCGAGGAGGCCGCAAACAC
GTCCATCGACAAAGTCAATGGCATGTTGCTCAACGGCAAGAAGGTCTACG
TGGGTAAGTTCATCCCGCGCAAGGAGCGCGAGAAGGAGCTGGGCGAGAAG
GCTAAGCTCTTCACCAATGTATATGTGAAGAACTTCACTGAGGATTTCGA
CGATGAAAAACTGAAGGAATTCTTTGAGCCCTACGGCAAGATAACCAGCT
ACAAGGTCATGTCCAAGGAGGATGGCAAGAGCAAGGGCTTCGGATTCGTT
GCATTCGAGACAACAGAGGCTGCTGAGGCGGCCGTTCAGGCTCTCAATGG
CAAGGACATGGGAGAGGGCAAGTCCCTGTACGTGGCTCGTGCCCAGAAGA
AGGCCGAACGCCAGCAGGAGCTGAAGCGCAAGTTCGAGGAACTGAAGCAG
AAGCGTCACGAGTCTGTGTTCGGCGTTAACTTGTACGTTAAGAACCTGGA
CGACACAATCGATGACGATCGTCTGCGCATCGCGTTCTCTCCATACGGCA
ACATCACATCGGCCAAGGTCATGACCGATGAGGAGGGTCGCTCCAAGGGA
TTCGGCTTCGTGTGCTTCAATGCCGCAAGCGAGGCTACCTGCGCCGTCAC
CGAGCTGAACGGTCGCGTCGTCGGCAGTAAGCCGTTGTACGTTGCTTTGG
CCCAAAGGAAGGAGGAGCGCAAGGCTCATCTCGCCTCGCAGTACATGCGT
CACATGACCGGCATGCGTATGCAGCAGCTGGGACAGATCTACCAGCCCAA
CGCGGCTAGCGGCTTCTTTGTGCCGACCCTTCCGTCAAATCAGCGTTTCT
TCGGTTCCCAGGTGGCCACTCAGATGAGAAACACACCCCGCTGGGTGCCC
CAGGTGCGTCCCCCAGCAGCCATACAGGGTGTCCAGGCCGGAGCTGCCGC
TGCTGGTGGCTTCCAGGGCACAGCCGGTGCGGTGCCCACTCAGTTCCGTT
CGGCTGCTGCTGGCGCTCGCGGGGCACAGCCTCAGGTGCAGGGCACACAT
GCCGCCGCTGCTGCGGCTAACAACATGCGCAACACTGGAGCACGCGCTAT
TACTGGCCAGCAAACTGCAGCACCCAACATGCAGATCCCCGGAGCCCAAA
TCGCTGGCGGTGCCCAGCAGCGTACTTCCAACTATAAGTACACCTCAAAC
ATGCGCAATCCTCCAGTGCCACAGTTGCATCAGACCCAGCCAATTCCACA
GCAATTGCAAGGAAAGAATTCTGAGAAGCTCATTGCCTCGTTGCTGGCCA
ACGCCAAGCCGCAGGAGCAGAAACAGATCCTGGGCGAGCGTCTGTATCCG
ATGATTGAGCATATGCACGCCAATTTGGCTGGTAAGATCACCGGCATGTT
GTTGGAGATCGAAAACTCTGAGCTCTTGCACATGATCGAGGATCAGGAGG
CCCTTAAGGCCAAGGTGGAGGAGGCTGTGGCCGTGCTTCAGGTGCACCGC
GTCACCGAGCCCGCCAACTAAAAGCTTTCTAGACCAT
BS09754.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 1905 | CG5119-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
| pAbp-RB | 1905 | CG5119-PB | 1..1905 | 17..1921 | 9525 | 100 | Plus |
| pAbp-RC | 1905 | CG5119-PC | 1..1905 | 17..1921 | 9525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 2433 | CG5119-RA | 198..2102 | 17..1921 | 9525 | 100 | Plus |
| pAbp-RB | 3870 | CG5119-RB | 62..1966 | 17..1921 | 9525 | 100 | Plus |
| pAbp-RC | 3127 | CG5119-RC | 275..2179 | 17..1921 | 9525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18143412..18144897 | 182..1667 | 7430 | 100 | Plus |
| 2R | 25286936 | 2R | 18144967..18145220 | 1668..1921 | 1270 | 100 | Plus |
| 2R | 25286936 | 2R | 18141507..18141677 | 17..187 | 840 | 99.4 | Plus |
| 2R | 25286936 | 2R | 24524945..24525124 | 475..296 | 225 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:34:37 has no hits.
BS09754.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:21 Download gff for
BS09754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RF | 238..2140 | 17..1919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:33 Download gff for
BS09754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..2177 | 17..1919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:52 Download gff for
BS09754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..2177 | 17..1919 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:52 Download gff for
BS09754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18141507..18141672 | 17..182 | 100 | -> | Plus |
| 2R | 18143413..18144897 | 183..1667 | 100 | -> | Plus |
| 2R | 18144967..18145218 | 1668..1919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:33 Download gff for
BS09754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14029012..14029177 | 17..182 | 100 | -> | Plus |
| arm_2R | 14030918..14032402 | 183..1667 | 100 | -> | Plus |
| arm_2R | 14032472..14032723 | 1668..1919 | 100 | | Plus |
BS09754.pep Sequence
Translation from 16 to 1920
> BS09754.pep
MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNF
QQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRA
IDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV
NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLK
EFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGE
GKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDD
DRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGR
VVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGF
FVPTLPSNQRFFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQ
GTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQQT
AAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQLQGK
NSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIEN
SELLHMIEDQEALKAKVEEAVAVLQVHRVTEPAN*
BS09754.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-PA | 634 | CG5119-PA | 1..634 | 1..634 | 3245 | 100 | Plus |
| pAbp-PB | 634 | CG5119-PB | 1..634 | 1..634 | 3245 | 100 | Plus |
| pAbp-PC | 634 | CG5119-PC | 1..634 | 1..634 | 3245 | 100 | Plus |
| CG4612-PC | 307 | CG4612-PC | 113..305 | 90..285 | 628 | 60.2 | Plus |
| CG4612-PA | 307 | CG4612-PA | 113..305 | 90..285 | 628 | 60.2 | Plus |
| CG4612-PC | 307 | CG4612-PC | 115..305 | 185..392 | 328 | 36.8 | Plus |
| CG4612-PC | 307 | CG4612-PC | 115..292 | 4..178 | 206 | 26.8 | Plus |
