Clone BS09755 Report

Search the DGRC for BS09755

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptVhaAC39-1-RA
Protein status:BS09755.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09755.3prime Sequence

945 bp (859 high quality bases) assembled on 2006-04-19

> BS09755.3prime
ATGGTCTAGAAAGCTTTTAGAAAATGGGTATGTAGTTGTCGATCTTTGCG
CGGTGCTTCTGGGCAACGCACTCGGCGATCCAGACGATGTTACGGCACTC
CTGCTCCTTCAGCTTGAGGTATGCGTAGAAGACACCGAAGTGGAACTGCT
GCAAAAAGGCGTACACGTCCAGCTTCACCTCGTGCTCGAAGAACTTGTCC
TCCAGCGTCTTGTCGCCGGGATTGTTGCCGGATCCGTCAAACAAAGCGGC
GTACTCCGCATAATACTCGGCCACGGTCTTCACCTGCTCGTAGTCGTCGG
CTCGCGCCAAAGCGGCTAGGCCATCGGGGTACATTTTGCCGCAGTTGGGA
TACAGCTTGGCACGGTCGTCCTTGGACAGCTCGGTGCCGAAGGAGTTGAT
GGTAATGATAATTGCACGACGATCGGCCTCAAAAGCCAGGATCTCGCACA
TGACGTCGGCGGTGGCACCACCCATGTTCTTGCAAAAGTTGTAGAACGCC
TCCAGGTAGGCCTTGTAAAGGGTGTTACGAATGATCTCGATGTTCATCTC
ATCCAGATCCTGCTCGGAGATGCAGTCGACGAAGAAGGGCGCCAGTGGCG
TGTCCACGAGGACGGCGTTGTAGAGCTCAGCGGGAGTGGACGCCACATGG
ATGGCTTCCATCTGCTCAAAGCTGCCCAGAGGGTGGCACTTGGGGATCAG
CTCCGAGATGGGTCGCTGGTGCAGCGTGCCAGTGATCAGCAGAATGATGT
TGTCGATCATATAACCGTAGGTAATGAAGTCCAGAAAGTTGGACAGCGGC
TCCACAGCATGGTTCCTCATGTGCTGGAACTCGATGACCAGCTTTTCGCG
CAACTTGTCGTCAATGACGGACACCGACAAGGGCGAGGGCTCGTTGGCCA
GGAAGCTGCCATAGTCCGTTCCCTGCAGATGCAGCTTGAGATCCT

BS09755.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2934-PA 1053 VhaAC39-RA 125..1053 945..17 4620 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-1-RA 1792 CG2934-RA 366..1294 945..17 4630 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3881453..3881962 943..434 2535 99.8 Minus
X 23542271 X 3882053..3882469 433..17 2085 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:37:03 has no hits.

BS09755.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:02 Download gff for BS09755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2934-PA 125..1053 17..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:18 Download gff for BS09755.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2934-PA 125..1053 17..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:13:28 Download gff for BS09755.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 366..1296 13..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:15 Download gff for BS09755.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 366..1296 13..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:15 Download gff for BS09755.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3881452..3881962 434..945 99 -> Minus
X 3882053..3882465 21..433 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:13:28 Download gff for BS09755.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3775485..3775995 434..945 99 -> Minus
arm_X 3776086..3776498 21..433 100 <- Minus

BS09755.5prime Sequence

872 bp (858 high quality bases) assembled on 2006-04-19

> BS09755.5prime
GAAGTTATCAGTCGACATGAACAGCTCGGGCTTTATGTTTAACATCGATA
ATGGATATCTGGAGGGTCTGTGCCGCGGCTTCAAGTGCGGCATCCTGAAG
CAGGCTGACTATCTCAACCTGGTGCAGTGCGAGACCTTGGAGGATCTCAA
GCTGCATCTGCAGGGAACGGACTATGGCAGCTTCCTGGCCAACGAGCCCT
CGCCCTTGTCGGTGTCCGTCATTGACGACAAGTTGCGCGAAAAGCTGGTC
ATCGAGTTCCAGCACATGAGGAACCATGCTGTGGAGCCGCTGTCCAACTT
TCTGGACTTCATTACCTACGGTTATATGATCGACAACATCATTCTGCTGA
TCACTGGCACGCTGCACCAGCGACCCATCTCGGAGCTGATCCCCAAGTGC
CACCCTCTGGGCAGCTTTGAGCAGATGGAAGCCATCCATGTGGCGTCCAC
TCCCGCTGAGCTCTACAACGCCGTCCTCGTGGACACGCCACTGGCGCCCT
TCTTCGTCGACTGCATCTCCGAGCAGGATCTGGATGAGATGAACATCGAG
ATCATTCGTAACACCCTTTACAAGGCCTACCTGGAGGCGTTCTACAACTT
TTGCAAGAACATGGGTGGTGCCACCGCCGACGTCATGTGCGAGATCCTGG
CTTTTGAGGCCGATCGTCGTGCAATTATCATTACCATCAACTCCTTCGGC
ACCGAGCTGTCCAAGGACGACCGTGCCAAGCTGTATCCCAACTGCGGCAA
AATGTACCCCGATGGCCTAGCCGCTTTGGCGCGAGCCGACGACTACGAGC
AGGTGAAGACCGTGGCCGAGTATTATGCGGAGTACGCCGCTTTGTTTGAC
GGATCCGGCAANCATCCCGGCG

BS09755.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2934-PA 1053 VhaAC39-RA 1..856 17..872 4211 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-1-RA 1792 CG2934-RA 242..1097 17..872 4239 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3881453..3881962 143..652 2535 99.8 Plus
X 23542271 X 3882053..3882272 653..872 1074 99.1 Plus
X 23542271 X 3880989..3881115 17..143 635 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:12:03 has no hits.

BS09755.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:03 Download gff for BS09755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2934-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:19 Download gff for BS09755.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2934-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:56:29 Download gff for BS09755.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 234..1097 8..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:30 Download gff for BS09755.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 234..1097 8..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:30 Download gff for BS09755.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3880981..3881115 8..143 97 -> Plus
X 3881454..3881962 144..652 99 -> Plus
X 3882053..3882272 653..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:56:29 Download gff for BS09755.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3775014..3775148 8..143 97 -> Plus
arm_X 3775487..3775995 144..652 99 -> Plus
arm_X 3776086..3776305 653..872 99   Plus

BS09755.complete Sequence

1085 bp (1085 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636477

> BS09755.complete
GAAGTTATCAGTCGACATGAACAGCTCGGGCTTTATGTTTAACATCGATA
ATGGATATCTGGAGGGTCTGTGCCGCGGCTTCAAGTGCGGCATCCTGAAG
CAGGCTGACTATCTCAACCTGGTGCAGTGCGAGACCTTGGAGGATCTCAA
GCTGCATCTGCAGGGAACGGACTATGGCAGCTTCCTGGCCAACGAGCCCT
CGCCCTTGTCGGTGTCCGTCATTGACGACAAGTTGCGCGAAAAGCTGGTC
ATCGAGTTCCAGCACATGAGGAACCATGCTGTGGAGCCGCTGTCCAACTT
TCTGGACTTCATTACCTACGGTTATATGATCGACAACATCATTCTGCTGA
TCACTGGCACGCTGCACCAGCGACCCATCTCGGAGCTGATCCCCAAGTGC
CACCCTCTGGGCAGCTTTGAGCAGATGGAAGCCATCCATGTGGCGTCCAC
TCCCGCTGAGCTCTACAACGCCGTCCTCGTGGACACGCCACTGGCGCCCT
TCTTCGTCGACTGCATCTCCGAGCAGGATCTGGATGAGATGAACATCGAG
ATCATTCGTAACACCCTTTACAAGGCCTACCTGGAGGCGTTCTACAACTT
TTGCAAGAACATGGGTGGTGCCACCGCCGACGTCATGTGCGAGATCCTGG
CTTTTGAGGCCGATCGTCGTGCAATTATCATTACCATCAACTCCTTCGGC
ACCGAGCTGTCCAAGGACGACCGTGCCAAGCTGTATCCCAACTGCGGCAA
AATGTACCCCGATGGCCTAGCCGCTTTGGCGCGAGCCGACGACTACGAGC
AGGTGAAGACCGTGGCCGAGTATTATGCGGAGTACGCCGCTTTGTTTGAC
GGATCCGGCAACAATCCCGGCGACAAGACGCTGGAGGACAAGTTCTTCGA
GCACGAGGTGAAGCTGGACGTGTACGCCTTTTTGCAGCAGTTCCACTTCG
GTGTCTTCTACGCATACCTCAAGCTGAAGGAGCAGGAGTGCCGTAACATC
GTCTGGATCGCCGAGTGCGTTGCCCAGAAGCACCGCGCAAAGATCGACAA
CTACATACCCATTTTCTAAAAGCTTTCTAGACCAT

BS09755.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-1-RA 1053 CG2934-PA 1..1053 17..1069 5250 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-1-RA 1792 CG2934-RA 242..1294 17..1069 5250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3881453..3881962 143..652 2535 99.8 Plus
X 23542271 X 3882053..3882469 653..1069 2085 100 Plus
X 23542271 X 3880989..3881115 17..143 635 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:48:43 has no hits.

BS09755.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:21 Download gff for BS09755.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-RA 1..1053 17..1069 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:17 Download gff for BS09755.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-RA 242..1304 8..1073 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:02 Download gff for BS09755.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 242..1292 17..1067 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:21 Download gff for BS09755.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-RA 242..1304 8..1073 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:56 Download gff for BS09755.complete
Subject Subject Range Query Range Percent Splice Strand
VhaAC39-1-RA 242..1292 17..1067 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:56 Download gff for BS09755.complete
Subject Subject Range Query Range Percent Splice Strand
X 3880989..3881115 17..143 100 -> Plus
X 3881454..3881962 144..652 99 -> Plus
X 3882053..3882467 653..1067 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:02 Download gff for BS09755.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3775022..3775148 17..143 100 -> Plus
arm_X 3775487..3775995 144..652 99 -> Plus
arm_X 3776086..3776500 653..1067 100   Plus

BS09755.pep Sequence

Translation from 16 to 1068

> BS09755.pep
MNSSGFMFNIDNGYLEGLCRGFKCGILKQADYLNLVQCETLEDLKLHLQG
TDYGSFLANEPSPLSVSVIDDKLREKLVIEFQHMRNHAVEPLSNFLDFIT
YGYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELY
NAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMG
GATADVMCEILAFEADRRAIIITINSFGTELSKDDRAKLYPNCGKMYPDG
LAALARADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDKFFEHEVKL
DVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKIDNYIPIF
*

BS09755.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
VhaAC39-1-PA 350 CG2934-PA 1..350 1..350 1848 100 Plus
VhaAC39-2-PA 350 CG4624-PA 4..347 7..349 863 46.2 Plus