Clone Sequence Records
BS09755.3prime Sequence
945 bp (859 high quality bases) assembled on 2006-04-19
> BS09755.3prime
ATGGTCTAGAAAGCTTTTAGAAAATGGGTATGTAGTTGTCGATCTTTGCG
CGGTGCTTCTGGGCAACGCACTCGGCGATCCAGACGATGTTACGGCACTC
CTGCTCCTTCAGCTTGAGGTATGCGTAGAAGACACCGAAGTGGAACTGCT
GCAAAAAGGCGTACACGTCCAGCTTCACCTCGTGCTCGAAGAACTTGTCC
TCCAGCGTCTTGTCGCCGGGATTGTTGCCGGATCCGTCAAACAAAGCGGC
GTACTCCGCATAATACTCGGCCACGGTCTTCACCTGCTCGTAGTCGTCGG
CTCGCGCCAAAGCGGCTAGGCCATCGGGGTACATTTTGCCGCAGTTGGGA
TACAGCTTGGCACGGTCGTCCTTGGACAGCTCGGTGCCGAAGGAGTTGAT
GGTAATGATAATTGCACGACGATCGGCCTCAAAAGCCAGGATCTCGCACA
TGACGTCGGCGGTGGCACCACCCATGTTCTTGCAAAAGTTGTAGAACGCC
TCCAGGTAGGCCTTGTAAAGGGTGTTACGAATGATCTCGATGTTCATCTC
ATCCAGATCCTGCTCGGAGATGCAGTCGACGAAGAAGGGCGCCAGTGGCG
TGTCCACGAGGACGGCGTTGTAGAGCTCAGCGGGAGTGGACGCCACATGG
ATGGCTTCCATCTGCTCAAAGCTGCCCAGAGGGTGGCACTTGGGGATCAG
CTCCGAGATGGGTCGCTGGTGCAGCGTGCCAGTGATCAGCAGAATGATGT
TGTCGATCATATAACCGTAGGTAATGAAGTCCAGAAAGTTGGACAGCGGC
TCCACAGCATGGTTCCTCATGTGCTGGAACTCGATGACCAGCTTTTCGCG
CAACTTGTCGTCAATGACGGACACCGACAAGGGCGAGGGCTCGTTGGCCA
GGAAGCTGCCATAGTCCGTTCCCTGCAGATGCAGCTTGAGATCCT
BS09755.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2934-PA | 1053 | VhaAC39-RA | 125..1053 | 945..17 | 4620 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC39-1-RA | 1792 | CG2934-RA | 366..1294 | 945..17 | 4630 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3881453..3881962 | 943..434 | 2535 | 99.8 | Minus |
X | 23542271 | X | 3882053..3882469 | 433..17 | 2085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:37:03 has no hits.
BS09755.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:02 Download gff for
BS09755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2934-PA | 125..1053 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:18 Download gff for
BS09755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2934-PA | 125..1053 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:13:28 Download gff for
BS09755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-1-RA | 366..1296 | 13..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:15 Download gff for
BS09755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-1-RA | 366..1296 | 13..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:15 Download gff for
BS09755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3881452..3881962 | 434..945 | 99 | -> | Minus |
X | 3882053..3882465 | 21..433 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:13:28 Download gff for
BS09755.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3775485..3775995 | 434..945 | 99 | -> | Minus |
arm_X | 3776086..3776498 | 21..433 | 100 | <- | Minus |
BS09755.5prime Sequence
872 bp (858 high quality bases) assembled on 2006-04-19
> BS09755.5prime
GAAGTTATCAGTCGACATGAACAGCTCGGGCTTTATGTTTAACATCGATA
ATGGATATCTGGAGGGTCTGTGCCGCGGCTTCAAGTGCGGCATCCTGAAG
CAGGCTGACTATCTCAACCTGGTGCAGTGCGAGACCTTGGAGGATCTCAA
GCTGCATCTGCAGGGAACGGACTATGGCAGCTTCCTGGCCAACGAGCCCT
CGCCCTTGTCGGTGTCCGTCATTGACGACAAGTTGCGCGAAAAGCTGGTC
ATCGAGTTCCAGCACATGAGGAACCATGCTGTGGAGCCGCTGTCCAACTT
TCTGGACTTCATTACCTACGGTTATATGATCGACAACATCATTCTGCTGA
TCACTGGCACGCTGCACCAGCGACCCATCTCGGAGCTGATCCCCAAGTGC
CACCCTCTGGGCAGCTTTGAGCAGATGGAAGCCATCCATGTGGCGTCCAC
TCCCGCTGAGCTCTACAACGCCGTCCTCGTGGACACGCCACTGGCGCCCT
TCTTCGTCGACTGCATCTCCGAGCAGGATCTGGATGAGATGAACATCGAG
ATCATTCGTAACACCCTTTACAAGGCCTACCTGGAGGCGTTCTACAACTT
TTGCAAGAACATGGGTGGTGCCACCGCCGACGTCATGTGCGAGATCCTGG
CTTTTGAGGCCGATCGTCGTGCAATTATCATTACCATCAACTCCTTCGGC
ACCGAGCTGTCCAAGGACGACCGTGCCAAGCTGTATCCCAACTGCGGCAA
AATGTACCCCGATGGCCTAGCCGCTTTGGCGCGAGCCGACGACTACGAGC
AGGTGAAGACCGTGGCCGAGTATTATGCGGAGTACGCCGCTTTGTTTGAC
GGATCCGGCAANCATCCCGGCG
BS09755.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2934-PA | 1053 | VhaAC39-RA | 1..856 | 17..872 | 4211 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC39-1-RA | 1792 | CG2934-RA | 242..1097 | 17..872 | 4239 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3881453..3881962 | 143..652 | 2535 | 99.8 | Plus |
X | 23542271 | X | 3882053..3882272 | 653..872 | 1074 | 99.1 | Plus |
X | 23542271 | X | 3880989..3881115 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:12:03 has no hits.
BS09755.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:03 Download gff for
BS09755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2934-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:19 Download gff for
BS09755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2934-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:56:29 Download gff for
BS09755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-1-RA | 234..1097 | 8..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:30 Download gff for
BS09755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-1-RA | 234..1097 | 8..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:30 Download gff for
BS09755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3880981..3881115 | 8..143 | 97 | -> | Plus |
X | 3881454..3881962 | 144..652 | 99 | -> | Plus |
X | 3882053..3882272 | 653..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:56:29 Download gff for
BS09755.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3775014..3775148 | 8..143 | 97 | -> | Plus |
arm_X | 3775487..3775995 | 144..652 | 99 | -> | Plus |
arm_X | 3776086..3776305 | 653..872 | 99 | | Plus |
BS09755.complete Sequence
1085 bp (1085 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636477
> BS09755.complete
GAAGTTATCAGTCGACATGAACAGCTCGGGCTTTATGTTTAACATCGATA
ATGGATATCTGGAGGGTCTGTGCCGCGGCTTCAAGTGCGGCATCCTGAAG
CAGGCTGACTATCTCAACCTGGTGCAGTGCGAGACCTTGGAGGATCTCAA
GCTGCATCTGCAGGGAACGGACTATGGCAGCTTCCTGGCCAACGAGCCCT
CGCCCTTGTCGGTGTCCGTCATTGACGACAAGTTGCGCGAAAAGCTGGTC
ATCGAGTTCCAGCACATGAGGAACCATGCTGTGGAGCCGCTGTCCAACTT
TCTGGACTTCATTACCTACGGTTATATGATCGACAACATCATTCTGCTGA
TCACTGGCACGCTGCACCAGCGACCCATCTCGGAGCTGATCCCCAAGTGC
CACCCTCTGGGCAGCTTTGAGCAGATGGAAGCCATCCATGTGGCGTCCAC
TCCCGCTGAGCTCTACAACGCCGTCCTCGTGGACACGCCACTGGCGCCCT
TCTTCGTCGACTGCATCTCCGAGCAGGATCTGGATGAGATGAACATCGAG
ATCATTCGTAACACCCTTTACAAGGCCTACCTGGAGGCGTTCTACAACTT
TTGCAAGAACATGGGTGGTGCCACCGCCGACGTCATGTGCGAGATCCTGG
CTTTTGAGGCCGATCGTCGTGCAATTATCATTACCATCAACTCCTTCGGC
ACCGAGCTGTCCAAGGACGACCGTGCCAAGCTGTATCCCAACTGCGGCAA
AATGTACCCCGATGGCCTAGCCGCTTTGGCGCGAGCCGACGACTACGAGC
AGGTGAAGACCGTGGCCGAGTATTATGCGGAGTACGCCGCTTTGTTTGAC
GGATCCGGCAACAATCCCGGCGACAAGACGCTGGAGGACAAGTTCTTCGA
GCACGAGGTGAAGCTGGACGTGTACGCCTTTTTGCAGCAGTTCCACTTCG
GTGTCTTCTACGCATACCTCAAGCTGAAGGAGCAGGAGTGCCGTAACATC
GTCTGGATCGCCGAGTGCGTTGCCCAGAAGCACCGCGCAAAGATCGACAA
CTACATACCCATTTTCTAAAAGCTTTCTAGACCAT
BS09755.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC39-1-RA | 1053 | CG2934-PA | 1..1053 | 17..1069 | 5250 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC39-1-RA | 1792 | CG2934-RA | 242..1294 | 17..1069 | 5250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3881453..3881962 | 143..652 | 2535 | 99.8 | Plus |
X | 23542271 | X | 3882053..3882469 | 653..1069 | 2085 | 100 | Plus |
X | 23542271 | X | 3880989..3881115 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:48:43 has no hits.
BS09755.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:21 Download gff for
BS09755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-RA | 1..1053 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:17 Download gff for
BS09755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-RA | 242..1304 | 8..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:02 Download gff for
BS09755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-1-RA | 242..1292 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:21 Download gff for
BS09755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-RA | 242..1304 | 8..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:56 Download gff for
BS09755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaAC39-1-RA | 242..1292 | 17..1067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:56 Download gff for
BS09755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3880989..3881115 | 17..143 | 100 | -> | Plus |
X | 3881454..3881962 | 144..652 | 99 | -> | Plus |
X | 3882053..3882467 | 653..1067 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:02 Download gff for
BS09755.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3775022..3775148 | 17..143 | 100 | -> | Plus |
arm_X | 3775487..3775995 | 144..652 | 99 | -> | Plus |
arm_X | 3776086..3776500 | 653..1067 | 100 | | Plus |
BS09755.pep Sequence
Translation from 16 to 1068
> BS09755.pep
MNSSGFMFNIDNGYLEGLCRGFKCGILKQADYLNLVQCETLEDLKLHLQG
TDYGSFLANEPSPLSVSVIDDKLREKLVIEFQHMRNHAVEPLSNFLDFIT
YGYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELY
NAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMG
GATADVMCEILAFEADRRAIIITINSFGTELSKDDRAKLYPNCGKMYPDG
LAALARADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDKFFEHEVKL
DVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKIDNYIPIF
*
BS09755.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaAC39-1-PA | 350 | CG2934-PA | 1..350 | 1..350 | 1848 | 100 | Plus |
VhaAC39-2-PA | 350 | CG4624-PA | 4..347 | 7..349 | 863 | 46.2 | Plus |