Clone Sequence Records
BS09774.3prime Sequence
912 bp (865 high quality bases) assembled on 2006-04-19
> BS09774.3prime
ATGGTCTAGAAAGCTTTTATGGCTGAACGAGGACAGCGCGATGCCGAAGA
GCGCCAGCATGGTGGCAGAGCGGGTCACCACACGGTTGGGCGACGACGAG
CTGGTGGTGAAGCCATGGCTGCAGTGCGTCGTGGCCTGTGTGGACAACGT
CGGCGCCTTGCGGCTGGGTGGTTGCTTTCTTGGGCGGACTGCTGAAGGGA
GACCCCTTAGATTTGATGCTAGGAGACATCCTCACACTTGCCTTCACACA
AGCGGGTAGTAATGGTATTTCAGCTTTGCCTTGCCAGCTTTGGGACGTAG
CTCCCTTCAGATGAGCCACATGTTCCTTGGCTTTGGTGTCCTCAGTTTGT
ACTGCTTTTGCCTTGGGCGGACTTATTAATCTGTCGGGTAAGACGACAGT
TGAAGGTACTCCCAGCTCTGATTTCAATGCTTGTGGGGGTTCCTTGCATA
CGGTACTGTTCTCCTCCAGAAAGCTTAAGTCGGGAAGCTCCAGTTGTGGG
CAGGGTTTTTCCTCTGAAGGCGAGTGCAGATTTGGCATGGAACTGGAACT
CACATTTGTCTTAAGGGGGGTTTCTGTGGCAGAAGTCAATTGCTGCAGCA
GTTCCAATATAAATTCGTCATCATTTGGAGGAGGTTTGGACGTTAAGGCC
GCAGGGTGAGAAGGTAGCGTAGCAGCAGGAGATTCAAAAAGTTCAGATTG
TGGAGCAGTGATGGGAAGTGCTGCCTCCGAGTTCAGATCTTCATCAGAGG
AGACCTCATCGTTGTGTGGCCACAAACAGCTCCTGGACTCGCACTTCAGC
AGCTGCTCCTCGAGATTAATGTAAAAGTAGCGCAGCTTGTGATTCCTGCC
TTCACTCTGGCACTCCAGACACTCGTCTCCCGGCTGCAGTCGCTGCATTC
TCAACGACGATT
BS09774.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-PC | 954 | CG8229-RC | 59..950 | 912..21 | 4460 | 100 | Minus |
CG8229-PA | 1080 | CG8229-RA | 59..815 | 912..156 | 3785 | 100 | Minus |
CG33199-PA | 240 | CG33199-RA | 50..187 | 158..21 | 690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-RE | 1951 | CG8229-RE | 367..1262 | 912..17 | 4465 | 99.9 | Minus |
CG8229-RD | 1459 | CG8229-RD | 367..1123 | 912..156 | 3785 | 100 | Minus |
CG33199-RB | 1523 | CG33199-RB | 261..402 | 158..17 | 695 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8949845..8950601 | 156..912 | 3785 | 100 | Plus |
2R | 25286936 | 2R | 8948802..8948943 | 17..158 | 695 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:40:59 has no hits.
BS09774.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:33 Download gff for
BS09774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-PC | 59..954 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:59 Download gff for
BS09774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-PC | 59..954 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:46:11 Download gff for
BS09774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 367..1264 | 13..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:20 Download gff for
BS09774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 367..1264 | 13..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:20 Download gff for
BS09774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8948800..8948941 | 13..156 | 97 | <- | Plus |
2R | 8949846..8950601 | 157..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:46:11 Download gff for
BS09774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4836305..4836446 | 13..156 | 97 | <- | Plus |
arm_2R | 4837351..4838106 | 157..912 | 100 | | Plus |
BS09774.5prime Sequence
944 bp (777 high quality bases) assembled on 2006-04-19
> BS09774.5prime
GAAGTTATCAGTCGACATGCGCATTCTGGGGGAAACCTCTGAGTTTTTCG
GCCGGGCAAACCAAGGACCACCACAATCGTCGTTGAGAATGCAGCGACTG
CAGCCGGGAGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAGGAATCACAA
GCTGCGCTACTTTTACATTAATCTCGAGGAGCAGCTGCTGAAGTGCGAGT
CCAGGAGCTGTTTGTGGCCACACAACGATGAGGTCTCCTCTGATGAAGAT
CTGAACTCGGAGGCAGCACTTCCCATCACTGCTCCACAATCTGAACTTTT
TGAATCTCCTGCTGCTACGCTACCTTCTCACCCTGCGGCCTTAACGTCCA
AACCTCCTCCAAATGATGACGAATTTATATTGGAACTGCTGCAGCAATTG
ACTTCTGCCACAGAAACCCCCCTTAAGACAAATGTGAGTTCCAGTTCCAT
GCCAAATCTGCACTCGCCTTCAGAGGAAAAACCCTGCCCACAACTGGAGC
TTCCCGACTTAAGCTTTCTGGAGGAGAACAGTACCGTATGCAAGGAACCC
CCACAAGCATTGAAATCAGAGCTGGGAGTACCTTCAACTGTCGTCTTACC
CGACAGATTAATAAGTCCGCCCAAGGCAAAAGCAGTACAAACTGAGGACA
CCAAAGCCAAGGAACATGTGGCTCATCTGAAGGGAGCTACGTCCCAAAGC
TGGCAAGGCAAAGCTGAAATACCATTACTACCCGCTTGTGTGAAGGCAAG
TGTGAGGATGTCTCCTAGCATCAAATCTAAGGGGTCTCCCTTCAGCAGTC
CGCCCAAGAAAGCAACCACCCAGCCGCAAGGCGCCGACGTTGTCCACACA
GGCCACGACGCACTGCAGCCATGGCTTCACACCAGCTCGTCGTCGCCCAC
CGTGTGGTGACCCGCTCTGCCACATGCTGGCGCTCTTCGGCATC
BS09774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-PC | 954 | CG8229-RC | 1..864 | 17..880 | 4320 | 100 | Plus |
CG8229-PA | 1080 | CG8229-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
CG33199-PA | 240 | CG33199-RA | 50..101 | 829..880 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-RE | 1951 | CG8229-RE | 308..1239 | 16..944 | 4585 | 99.7 | Plus |
CG8229-RD | 1459 | CG8229-RD | 308..1123 | 16..831 | 4080 | 100 | Plus |
CG33199-RB | 1523 | CG33199-RB | 261..379 | 829..944 | 520 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8949845..8950660 | 831..16 | 4080 | 100 | Minus |
2R | 25286936 | 2R | 8948825..8948943 | 944..829 | 445 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:01:14 has no hits.
BS09774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:34 Download gff for
BS09774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-PC | 1..931 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:00 Download gff for
BS09774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-PC | 1..931 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:23:52 Download gff for
BS09774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 305..1239 | 9..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:35:34 Download gff for
BS09774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 305..1239 | 9..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:35:34 Download gff for
BS09774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8948825..8948941 | 831..944 | 97 | <- | Minus |
2R | 8949846..8950663 | 9..830 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:23:52 Download gff for
BS09774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4836330..4836446 | 831..944 | 97 | <- | Minus |
arm_2R | 4837351..4838168 | 9..830 | 99 | | Minus |
BS09774.complete Sequence
986 bp assembled on 2008-08-15
GenBank Submission: FJ636478
> BS09774.complete
GAAGTTATCAGTCGACATGCGCATTCTGGGGGAAACCTCTGAGTTTTTCG
GCCGGGCAAACCAAGGACCACCACAATCGTCGTTGAGAATGCAGCGACTG
CAGCCGGGAGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAGGAATCACAA
GCTGCGCTACTTTTACATTAATCTCGAGGAGCAGCTGCTGAAGTGCGAGT
CCAGGAGCTGTTTGTGGCCACACAACGATGAGGTCTCCTCTGATGAAGAT
CTGAACTCGGAGGCAGCACTTCCCATCACTGCTCCACAATCTGAACTTTT
TGAATCTCCTGCTGCTACGCTACCTTCTCACCCTGCGGCCTTAACGTCCA
AACCTCCTCCAAATGATGACGAATTTATATTGGAACTGCTGCAGCAATTG
ACTTCTGCCACAGAAACCCCCCTTAAGACAAATGTGAGTTCCAGTTCCAT
GCCAAATCTGCACTCGCCTTCAGAGGAAAAACCCTGCCCACAACTGGAGC
TTCCCGACTTAAGCTTTCTGGAGGAGAACAGTACCGTATGCAAGGAACCC
CCACAAGCATTGAAATCAGAGCTGGGAGTACCTTCAACTGTCGTCTTACC
CGACAGATTAATAAGTCCGCCCAAGGCAAAAGCAGTACAAACTGAGGACA
CCAAAGCCAAGGAACATGTGGCTCATCTGAAGGGAGCTACGTCCCAAAGC
TGGCAAGGCAAAGCTGAAATACCATTACTACCCGCTTGTGTGAAGGCAAG
TGTGAGGATGTCTCCTAGCATCAAATCTAAGGGGTCTCCCTTCAGCAGTC
CGCCCAAGAAAGCAACCACCCAGCCGCAAGGCGCCGACGTTGTCCACACA
GGCCACGACGCACTGCAGCCATGGCTTCACCACCAGCTCGTCGTCGCCCA
ACCGTGTGGTGACCCGCTCTGCCACCATGCTGGCGCTCTTCGGCATCGCG
CTGTCCTCGTTCAGCCATAAAAGCTTTCTAGACCAT
BS09774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-RE | 882 | CG8229-PE | 1..882 | 89..970 | 4395 | 99.9 | Plus |
CG8229-RD | 1008 | CG8229-PD | 1..743 | 89..831 | 3715 | 100 | Plus |
CG33199-RB | 240 | CG33199-PB | 50..191 | 829..970 | 695 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-RE | 1951 | CG8229-RE | 308..1262 | 16..970 | 4760 | 99.9 | Plus |
CG8229-RD | 1459 | CG8229-RD | 308..1123 | 16..831 | 4080 | 100 | Plus |
CG33199-RB | 1523 | CG33199-RB | 261..402 | 829..970 | 695 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8949845..8950660 | 831..16 | 4080 | 100 | Minus |
2R | 25286936 | 2R | 8948802..8948943 | 970..829 | 695 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:26:41 has no hits.
BS09774.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:02 Download gff for
BS09774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 323..1282 | 9..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:45 Download gff for
BS09774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 309..1259 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:57 Download gff for
BS09774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 327..1277 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:00 Download gff for
BS09774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 309..1259 | 17..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:00 Download gff for
BS09774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8948804..8948941 | 831..968 | 99 | <- | Minus |
2R | 8949846..8950659 | 17..830 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:45 Download gff for
BS09774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4836309..4836446 | 831..968 | 99 | <- | Minus |
arm_2R | 4837351..4838164 | 17..830 | 100 | | Minus |
BS09774.pep Sequence
Translation from 16 to 969
> BS09774.pep
MRILGETSEFFGRANQGPPQSSLRMQRLQPGDECLECQSEGRNHKLRYFY
INLEEQLLKCESRSCLWPHNDEVSSDEDLNSEAALPITAPQSELFESPAA
TLPSHPAALTSKPPPNDDEFILELLQQLTSATETPLKTNVSSSSMPNLHS
PSEEKPCPQLELPDLSFLEENSTVCKEPPQALKSELGVPSTVVLPDRLIS
PPKAKAVQTEDTKAKEHVAHLKGATSQSWQGKAEIPLLPACVKASVRMSP
SIKSKGSPFSSPPKKATTQPQGADVVHTGHDALQPWLHHQLVVAQPCGDP
LCHHAGALRHRAVLVQP*
BS09774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-PE | 293 | CG8229-PE | 1..293 | 25..317 | 1551 | 100 | Plus |
CG8229-PD | 335 | CG8229-PD | 1..248 | 25..272 | 1295 | 100 | Plus |