Clone BS09774 Report

Search the DGRC for BS09774

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:97
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG8229-RE
Protein status:BS09774.pep: gold
Sequenced Size:986

Clone Sequence Records

BS09774.3prime Sequence

912 bp (865 high quality bases) assembled on 2006-04-19

> BS09774.3prime
ATGGTCTAGAAAGCTTTTATGGCTGAACGAGGACAGCGCGATGCCGAAGA
GCGCCAGCATGGTGGCAGAGCGGGTCACCACACGGTTGGGCGACGACGAG
CTGGTGGTGAAGCCATGGCTGCAGTGCGTCGTGGCCTGTGTGGACAACGT
CGGCGCCTTGCGGCTGGGTGGTTGCTTTCTTGGGCGGACTGCTGAAGGGA
GACCCCTTAGATTTGATGCTAGGAGACATCCTCACACTTGCCTTCACACA
AGCGGGTAGTAATGGTATTTCAGCTTTGCCTTGCCAGCTTTGGGACGTAG
CTCCCTTCAGATGAGCCACATGTTCCTTGGCTTTGGTGTCCTCAGTTTGT
ACTGCTTTTGCCTTGGGCGGACTTATTAATCTGTCGGGTAAGACGACAGT
TGAAGGTACTCCCAGCTCTGATTTCAATGCTTGTGGGGGTTCCTTGCATA
CGGTACTGTTCTCCTCCAGAAAGCTTAAGTCGGGAAGCTCCAGTTGTGGG
CAGGGTTTTTCCTCTGAAGGCGAGTGCAGATTTGGCATGGAACTGGAACT
CACATTTGTCTTAAGGGGGGTTTCTGTGGCAGAAGTCAATTGCTGCAGCA
GTTCCAATATAAATTCGTCATCATTTGGAGGAGGTTTGGACGTTAAGGCC
GCAGGGTGAGAAGGTAGCGTAGCAGCAGGAGATTCAAAAAGTTCAGATTG
TGGAGCAGTGATGGGAAGTGCTGCCTCCGAGTTCAGATCTTCATCAGAGG
AGACCTCATCGTTGTGTGGCCACAAACAGCTCCTGGACTCGCACTTCAGC
AGCTGCTCCTCGAGATTAATGTAAAAGTAGCGCAGCTTGTGATTCCTGCC
TTCACTCTGGCACTCCAGACACTCGTCTCCCGGCTGCAGTCGCTGCATTC
TCAACGACGATT

BS09774.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-PC 954 CG8229-RC 59..950 912..21 4460 100 Minus
CG8229-PA 1080 CG8229-RA 59..815 912..156 3785 100 Minus
CG33199-PA 240 CG33199-RA 50..187 158..21 690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-RE 1951 CG8229-RE 367..1262 912..17 4465 99.9 Minus
CG8229-RD 1459 CG8229-RD 367..1123 912..156 3785 100 Minus
CG33199-RB 1523 CG33199-RB 261..402 158..17 695 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8949845..8950601 156..912 3785 100 Plus
2R 25286936 2R 8948802..8948943 17..158 695 99.3 Plus
Blast to na_te.dros performed on 2015-02-11 12:40:59 has no hits.

BS09774.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:33 Download gff for BS09774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8229-PC 59..954 17..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:32:59 Download gff for BS09774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8229-PC 59..954 17..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:46:11 Download gff for BS09774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 367..1264 13..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:20 Download gff for BS09774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 367..1264 13..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:20 Download gff for BS09774.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8948800..8948941 13..156 97 <- Plus
2R 8949846..8950601 157..912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:46:11 Download gff for BS09774.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4836305..4836446 13..156 97 <- Plus
arm_2R 4837351..4838106 157..912 100   Plus

BS09774.5prime Sequence

944 bp (777 high quality bases) assembled on 2006-04-19

> BS09774.5prime
GAAGTTATCAGTCGACATGCGCATTCTGGGGGAAACCTCTGAGTTTTTCG
GCCGGGCAAACCAAGGACCACCACAATCGTCGTTGAGAATGCAGCGACTG
CAGCCGGGAGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAGGAATCACAA
GCTGCGCTACTTTTACATTAATCTCGAGGAGCAGCTGCTGAAGTGCGAGT
CCAGGAGCTGTTTGTGGCCACACAACGATGAGGTCTCCTCTGATGAAGAT
CTGAACTCGGAGGCAGCACTTCCCATCACTGCTCCACAATCTGAACTTTT
TGAATCTCCTGCTGCTACGCTACCTTCTCACCCTGCGGCCTTAACGTCCA
AACCTCCTCCAAATGATGACGAATTTATATTGGAACTGCTGCAGCAATTG
ACTTCTGCCACAGAAACCCCCCTTAAGACAAATGTGAGTTCCAGTTCCAT
GCCAAATCTGCACTCGCCTTCAGAGGAAAAACCCTGCCCACAACTGGAGC
TTCCCGACTTAAGCTTTCTGGAGGAGAACAGTACCGTATGCAAGGAACCC
CCACAAGCATTGAAATCAGAGCTGGGAGTACCTTCAACTGTCGTCTTACC
CGACAGATTAATAAGTCCGCCCAAGGCAAAAGCAGTACAAACTGAGGACA
CCAAAGCCAAGGAACATGTGGCTCATCTGAAGGGAGCTACGTCCCAAAGC
TGGCAAGGCAAAGCTGAAATACCATTACTACCCGCTTGTGTGAAGGCAAG
TGTGAGGATGTCTCCTAGCATCAAATCTAAGGGGTCTCCCTTCAGCAGTC
CGCCCAAGAAAGCAACCACCCAGCCGCAAGGCGCCGACGTTGTCCACACA
GGCCACGACGCACTGCAGCCATGGCTTCACACCAGCTCGTCGTCGCCCAC
CGTGTGGTGACCCGCTCTGCCACATGCTGGCGCTCTTCGGCATC

BS09774.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-PC 954 CG8229-RC 1..864 17..880 4320 100 Plus
CG8229-PA 1080 CG8229-RA 1..815 17..831 4075 100 Plus
CG33199-PA 240 CG33199-RA 50..101 829..880 260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-RE 1951 CG8229-RE 308..1239 16..944 4585 99.7 Plus
CG8229-RD 1459 CG8229-RD 308..1123 16..831 4080 100 Plus
CG33199-RB 1523 CG33199-RB 261..379 829..944 520 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8949845..8950660 831..16 4080 100 Minus
2R 25286936 2R 8948825..8948943 944..829 445 97.5 Minus
Blast to na_te.dros performed on 2015-02-11 12:01:14 has no hits.

BS09774.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:34 Download gff for BS09774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8229-PC 1..931 17..944 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:00 Download gff for BS09774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8229-PC 1..931 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:23:52 Download gff for BS09774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 305..1239 9..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:35:34 Download gff for BS09774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 305..1239 9..944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:35:34 Download gff for BS09774.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8948825..8948941 831..944 97 <- Minus
2R 8949846..8950663 9..830 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:23:52 Download gff for BS09774.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4836330..4836446 831..944 97 <- Minus
arm_2R 4837351..4838168 9..830 99   Minus

BS09774.complete Sequence

986 bp assembled on 2008-08-15

GenBank Submission: FJ636478

> BS09774.complete
GAAGTTATCAGTCGACATGCGCATTCTGGGGGAAACCTCTGAGTTTTTCG
GCCGGGCAAACCAAGGACCACCACAATCGTCGTTGAGAATGCAGCGACTG
CAGCCGGGAGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAGGAATCACAA
GCTGCGCTACTTTTACATTAATCTCGAGGAGCAGCTGCTGAAGTGCGAGT
CCAGGAGCTGTTTGTGGCCACACAACGATGAGGTCTCCTCTGATGAAGAT
CTGAACTCGGAGGCAGCACTTCCCATCACTGCTCCACAATCTGAACTTTT
TGAATCTCCTGCTGCTACGCTACCTTCTCACCCTGCGGCCTTAACGTCCA
AACCTCCTCCAAATGATGACGAATTTATATTGGAACTGCTGCAGCAATTG
ACTTCTGCCACAGAAACCCCCCTTAAGACAAATGTGAGTTCCAGTTCCAT
GCCAAATCTGCACTCGCCTTCAGAGGAAAAACCCTGCCCACAACTGGAGC
TTCCCGACTTAAGCTTTCTGGAGGAGAACAGTACCGTATGCAAGGAACCC
CCACAAGCATTGAAATCAGAGCTGGGAGTACCTTCAACTGTCGTCTTACC
CGACAGATTAATAAGTCCGCCCAAGGCAAAAGCAGTACAAACTGAGGACA
CCAAAGCCAAGGAACATGTGGCTCATCTGAAGGGAGCTACGTCCCAAAGC
TGGCAAGGCAAAGCTGAAATACCATTACTACCCGCTTGTGTGAAGGCAAG
TGTGAGGATGTCTCCTAGCATCAAATCTAAGGGGTCTCCCTTCAGCAGTC
CGCCCAAGAAAGCAACCACCCAGCCGCAAGGCGCCGACGTTGTCCACACA
GGCCACGACGCACTGCAGCCATGGCTTCACCACCAGCTCGTCGTCGCCCA
ACCGTGTGGTGACCCGCTCTGCCACCATGCTGGCGCTCTTCGGCATCGCG
CTGTCCTCGTTCAGCCATAAAAGCTTTCTAGACCAT

BS09774.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-RE 882 CG8229-PE 1..882 89..970 4395 99.9 Plus
CG8229-RD 1008 CG8229-PD 1..743 89..831 3715 100 Plus
CG33199-RB 240 CG33199-PB 50..191 829..970 695 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-RE 1951 CG8229-RE 308..1262 16..970 4760 99.9 Plus
CG8229-RD 1459 CG8229-RD 308..1123 16..831 4080 100 Plus
CG33199-RB 1523 CG33199-RB 261..402 829..970 695 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8949845..8950660 831..16 4080 100 Minus
2R 25286936 2R 8948802..8948943 970..829 695 99.3 Minus
Blast to na_te.dros performed on 2014-11-27 10:26:41 has no hits.

BS09774.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:02 Download gff for BS09774.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 323..1282 9..974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:45 Download gff for BS09774.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 309..1259 17..968 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:57 Download gff for BS09774.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 327..1277 17..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:00 Download gff for BS09774.complete
Subject Subject Range Query Range Percent Splice Strand
CG8229-RE 309..1259 17..968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:00 Download gff for BS09774.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8948804..8948941 831..968 99 <- Minus
2R 8949846..8950659 17..830 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:45 Download gff for BS09774.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4836309..4836446 831..968 99 <- Minus
arm_2R 4837351..4838164 17..830 100   Minus

BS09774.pep Sequence

Translation from 16 to 969

> BS09774.pep
MRILGETSEFFGRANQGPPQSSLRMQRLQPGDECLECQSEGRNHKLRYFY
INLEEQLLKCESRSCLWPHNDEVSSDEDLNSEAALPITAPQSELFESPAA
TLPSHPAALTSKPPPNDDEFILELLQQLTSATETPLKTNVSSSSMPNLHS
PSEEKPCPQLELPDLSFLEENSTVCKEPPQALKSELGVPSTVVLPDRLIS
PPKAKAVQTEDTKAKEHVAHLKGATSQSWQGKAEIPLLPACVKASVRMSP
SIKSKGSPFSSPPKKATTQPQGADVVHTGHDALQPWLHHQLVVAQPCGDP
LCHHAGALRHRAVLVQP*

BS09774.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8229-PE 293 CG8229-PE 1..293 25..317 1551 100 Plus
CG8229-PD 335 CG8229-PD 1..248 25..272 1295 100 Plus