Clone Sequence Records
BS09781.3prime Sequence
943 bp (851 high quality bases) assembled on 2006-04-19
> BS09781.3prime
ATGGTCTAGAAAGCTTCTACCAAAATCCTGGAGGCAAAACTCCGACAGCC
TGTGCAATCTGCCGCTCACGCAGGAACTTGGCCAGGAGCATTTCCAGCCG
TGTCTTCGGACCACCTTCGTCGTAGGCTGCCAGCTGAGGCATGTAGATAT
TCTGAATGTAGACCAGCAGCTTGACGAACTGCTTGCCGTAGGTGCGCCAC
AACTCGAAGCCGAGGGTCTGGAGAATCTCCATGATCAAGGTAGCACTAAT
ATCGGGCAATGGTTTCACATGCACCATGTGCGCTAGCCAGAGCCATCCCT
CATTCAGCTCGAAGCATTCATCCGGTCCAGCTGCCTTTCGCCCTTGACTA
ATGATCACAGCTGCGTAGAGCCGAGCGAGTCCCGTTTGACGCTTAAGGTA
AATGTCCGGTTTCTCCAGCTCGTTTTTATCCGTCAGCCGATAGCCTATGG
TCTTCAGATACTGCTCCGGAGTCTGTCCCTGCTGCTGGGGTATAACGTAA
GGCACCAGAAAGGGTGACTCTTTGTACATGTAGGCGAGAAAAACCTTACC
AAAATCCGGCAACAGCTTCCAAAAAGTTATTATCACCGAGGCAAAGGGAA
AGGCGGCCTGGGGATTGCTGCATATGGCAGTCTCCGTTTGACTGACAAAC
TTCTTGGCCATAAGTAGCATGCAATAGTCTCGGGCCAGCGGATGGTCGTT
AATAGTTATGGTGCCATTCATCACCTTGGTAGGCTGGCCGGCAAAGAAGC
TGTACAGCTTGTCAAAGTTCTGGGCTAGATGCTGCGGACTAACTGCTGAA
ATGGCGTTGAGGGGCAGGTTTATTGCCCTCTGGCAACCGGTGCGATACTG
CTTAAGGGATTCCTCCGTTTGCAGCGGCTTTACGGCATCCACTTTGGACT
GATACAGTGCTAGGATATCGTTGTAGAACTTCAGACCGTCTGG
BS09781.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14749-PA | 2034 | CG14749-RA | 1108..2034 | 943..17 | 4610 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14749-RA | 2287 | CG14749-RA | 1250..2176 | 943..17 | 4620 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8629149..8630075 | 943..17 | 4620 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:36:18 has no hits.
BS09781.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:45 Download gff for
BS09781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-PA | 1108..2034 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:12 Download gff for
BS09781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-PA | 1108..2034 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:13:22 Download gff for
BS09781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-RA | 1250..2178 | 13..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:03 Download gff for
BS09781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-RA | 1250..2178 | 13..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:03 Download gff for
BS09781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8629149..8630075 | 17..943 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:13:22 Download gff for
BS09781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4516654..4517580 | 17..943 | 99 | -> | Minus |
BS09781.5prime Sequence
890 bp (861 high quality bases) assembled on 2006-04-19
> BS09781.5prime
GAAGTTATCAGTCGACATGGACGACATGATGCGGGCGATGGACTGTCTAA
ATATGGCAGCGACGTTGCGCAACGCGGCTCTGGCGTCCGCAACGTGCACG
GGCAGGACTTTGGGCGAGGATCGGGAACCTATATGGGTGGAGGGCAGTCG
GAAGACACCTGAGCCACCATTACCCGAAGAAAGCCCAGCTCCAGAGCCCA
ATAACGAGATTCCCCTGCTGCCCAAAATAGATTTTGAGCCTAATATATCT
TGCTTTCCCGACCTACAGGCTATCAACGCTAGCATTGTTAGGCGGGAACT
GGAGGAGGAGGGTAAGAGGTGTGTCCGCCAGCAGCTAAAGGCGATAAGGG
ACAAACAGGACGCCATGCGCCTGTCGCGAGAGACGCAGCAAAGGAAGGAG
GAACGCCAGCGCGACCAGTTGCAACAAAAGGCGCTGCGGGAACGCAATGA
AAGTCTCCTTATCCAGAAAGCTGACCAGATGACTGCGGCACAACTAGAGG
CCCAGCAGCGCGAGCAATTGGCACTGCGCCAACAGATTGACCAGAAGCTG
CACAAGTTGGCCCTGGAGGGCGTGTCCCGCTGCCAAAGGAGATTCAACCA
GAAGTACGAGGGCATCGCCAAAATTCTGCTTTCTCTGAATCCAGAAACGG
TCAAGGTGTGCGCCGCGCAAAACACACAGCTCAAAGAGTTGGGCCAGAAA
TTTGAACAGCTCGTGAGCTCCGTTAAGATGGGCAATTGCGAGATGCAGAG
CCAGTTCCTCTGCTCCATAATCAAGGCGGAAGAGTTCTGCAAGAGCCTGN
ATGCTCTGGAGCTGGACATCATTAAGCAGCTGGCCGAGTTCTCCGAACAG
ATCCAGCAGCAGCTCAAAATGGAGGCCGCCAAGAAGCTGG
BS09781.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14749-PA | 2034 | CG14749-RA | 1..874 | 17..890 | 4351 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14749-RA | 2287 | CG14749-RA | 142..1016 | 16..890 | 4364 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8628041..8628915 | 16..890 | 4364 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:14:59 has no hits.
BS09781.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:46 Download gff for
BS09781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:14 Download gff for
BS09781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:57:01 Download gff for
BS09781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-RA | 142..1016 | 16..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:59 Download gff for
BS09781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-RA | 142..1016 | 16..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:59 Download gff for
BS09781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8628041..8628915 | 16..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:57:01 Download gff for
BS09781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4515546..4516420 | 16..890 | 99 | | Plus |
BS09781.complete Sequence
2066 bp assembled on 2009-12-07
GenBank Submission: KX803017
> BS09781.complete
GAAGTTATCAGTCGACATGGACGACATGATGCGGGCGATGGACTGTCTAA
ATATGGCAGCGACGTTGCGCAACGCGGCTCTGGCGTCCGCAACGTGCACG
GGCAGGACTTTGGGCGAGGATCGGGAACCTATATGGGTGGAGGGCAGTCG
GAAGACACCTGAGCCACCATTACCCGAAGAAAGCCCAGCTCCAGAGCCCA
ATAACGAGATTCCCCTGCTGCCCAAAATAGATTTTGAGCCTAATATATCT
TGCTTTCCCGACCTACAGGCTATCAACGCTAGCATTGTTAGGCGGGAACT
GGAGGAGGAGGGTAAGAGGTGTGTCCGCCAGCAGCTAAAGGCGATAAGGG
ACAAACAGGACGCCATGCGCCTGTCGCGAGAGACGCAGCAAAGGAAGGAG
GAACGCCAGCGCGACCAGTTGCAACAAAAGGCGCTGCGGGAACGCAATGA
AAGTCTCCTTATCCAGAAAGCTGACCAGATGACTGCGGCACAACTAGAGG
CCCAGCAGCGCGAGCAATTGGCACTGCGCCAACAGATTGACCAGAAGCTG
CACAAGTTGGCCCTGGAGGGCGTGTCCCGCTGCCAAAGGAGATTCAACCA
GAAGTACGAGGGCATCGCCAAAATTCTGCTTTCTCTGAATCCAGAAACGG
TCAAGGTGTGCGCCGCGCAAAACACACAGCTCAAAGAGTTGGGCCAGAAA
TTTGAACAGCTCGTGAGCTCCGTTAAGATGGGCAATTGCGAGATGCAGAG
CCAGTTCCTCTGCTCCATAATCAAGGCGGAAGAGTTCTGCAAGAGCCTGG
ATGCTCTGGAGCTGGACATCATTAAGCAGCTGGCCGAGTTCTCCGAACAG
ATCCAGCAGCAGCTCAAAATGGAGGCCGCCAAGAAGCTGGAAGACGAGCG
ACAAAGGCAGCAGCAGCAGGAGGAAGAGCGACAAAAGCTGGAGGAGCAAC
AAAAGCTGGAGGAGCAGGAAAAGCTAAGGAAGGAAAAGGAGGAATCGGCG
GCTAAGGAAAAACAACAAGAGGCCGAGACTGCCAAGGCCGATGCGGCCAA
TGTTCCCGCTCCGCTTGAGCCAAAATCCCAAGATGTGCCACCAGCGGCCA
CGGCGACATCTACTTCTGTTCACCCAGACCGTCTGAAGTTCTACAACGAT
ATCCTAGCACTGTATCAGTCCAAAGTGGATGCCGTAAAGCCGCTGCAAAC
GGAGGAATCCCTTAAGCAGTATCGCACCGGTTGCCAGAGGGCAATAAACC
TGCCCCTCAACGCCATTTCAGCAGTTAGTCCGCAGCATCTAGCCCAGAAC
TTTGACAAGCTGTACAGCTTCTTTGCCGGCCAGCCTACCAAGGTGATGAA
TGGCACCATAACTATTAACGACCATCCGCTGGCCCGAGACTATTGCATGC
TACTTATGGCCAAGAAGTTTGTCAGTCAAACGGAGACTGCCATATGCAGC
AATCCCCAGGCCGCCTTTCCCTTTGCCTCGGTGATAATAACTTTTTGGAA
GCTGTTGCCGGATTTTGGTAAGGTTTTTCTCGCCTACATGTACAAAGAGT
CACCCTTTCTGGTGCCTTACGTTATACCCCAGCAGCAGGGACAGACTCCG
GAGCAGTATCTGAAGACCATAGGCTATCGGCTGACGGATAAAAACGAGCT
GGAGAAACCGGACATTTACCTTAAGCGTCAAACGGGACTCGCTCGGCTCT
ACGCAGCTGTGATCATTAGTCAAGGGCGAAAGGCAGCTGGACCGGATGAA
TGCTTCGAGCTGAATGAGGGATGGCTCTGGCTAGCGCACATGGTGCATGT
GAAACCATTGCCCGATATTAGTGCTACCTTGATCATGGAGATTCTCCAGA
CCCTCGGCTTCGAGTTGTGGCGCACCTACGGCAAGCAGTTCGTCAAGCTG
CTGGTCTACATTCAGAATATCTACATGCCTCAGCTGGCAGCCTACGACGA
AGGTGGTCCGAAGACACGGCTGGAAATGCTCCTGGCCAAGTTCCTGCGTG
AGCGGCAGATTGCACAGGCTGTCGGAGTTTTGCCTCCAGGATTTTGGTAG
AAGCTTTCTAGACCAT
BS09781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14749-RA | 2034 | CG14749-PA | 1..2034 | 17..2050 | 10170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14749-RA | 2287 | CG14749-RA | 142..2176 | 16..2050 | 10175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8628041..8630075 | 16..2050 | 10175 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2616 | 846..1110 | 183 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2459 | 885..1021 | 182 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6901 | 846..1018 | 174 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6847 | 892..1021 | 173 | 62.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 998..1143 | 817..969 | 163 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6837 | 864..993 | 154 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6928 | 846..1027 | 151 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6858 | 853..990 | 150 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6916 | 854..976 | 140 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2512 | 899..966 | 115 | 63.2 | Plus |
BS09781.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:08 Download gff for
BS09781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-RA | 166..2199 | 17..2050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:09 Download gff for
BS09781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-RA | 143..2176 | 17..2050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:05 Download gff for
BS09781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-RA | 166..2199 | 17..2050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:40 Download gff for
BS09781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14749-RA | 143..2176 | 17..2050 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:40 Download gff for
BS09781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8628042..8630075 | 17..2050 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:09 Download gff for
BS09781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4515547..4517580 | 17..2050 | 100 | | Plus |
BS09781.pep Sequence
Translation from 16 to 2049
> BS09781.pep
MDDMMRAMDCLNMAATLRNAALASATCTGRTLGEDREPIWVEGSRKTPEP
PLPEESPAPEPNNEIPLLPKIDFEPNISCFPDLQAINASIVRRELEEEGK
RCVRQQLKAIRDKQDAMRLSRETQQRKEERQRDQLQQKALRERNESLLIQ
KADQMTAAQLEAQQREQLALRQQIDQKLHKLALEGVSRCQRRFNQKYEGI
AKILLSLNPETVKVCAAQNTQLKELGQKFEQLVSSVKMGNCEMQSQFLCS
IIKAEEFCKSLDALELDIIKQLAEFSEQIQQQLKMEAAKKLEDERQRQQQ
QEEERQKLEEQQKLEEQEKLRKEKEESAAKEKQQEAETAKADAANVPAPL
EPKSQDVPPAATATSTSVHPDRLKFYNDILALYQSKVDAVKPLQTEESLK
QYRTGCQRAINLPLNAISAVSPQHLAQNFDKLYSFFAGQPTKVMNGTITI
NDHPLARDYCMLLMAKKFVSQTETAICSNPQAAFPFASVIITFWKLLPDF
GKVFLAYMYKESPFLVPYVIPQQQGQTPEQYLKTIGYRLTDKNELEKPDI
YLKRQTGLARLYAAVIISQGRKAAGPDECFELNEGWLWLAHMVHVKPLPD
ISATLIMEILQTLGFELWRTYGKQFVKLLVYIQNIYMPQLAAYDEGGPKT
RLEMLLAKFLRERQIAQAVGVLPPGFW*
BS09781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14749-PA | 677 | CG14749-PA | 1..677 | 1..677 | 3468 | 100 | Plus |
| rgn-PD | 800 | CG6014-PD | 357..759 | 30..423 | 175 | 24.3 | Plus |
| rgn-PA | 800 | CG6014-PA | 357..759 | 30..423 | 175 | 24.3 | Plus |
| rgn-PC | 808 | CG6014-PC | 365..767 | 30..423 | 175 | 24.3 | Plus |
| rgn-PB | 808 | CG6014-PB | 365..767 | 30..423 | 175 | 24.3 | Plus |
