Clone Sequence Records
BS09784.3prime Sequence
957 bp (815 high quality bases) assembled on 2006-04-19
> BS09784.3prime
ATGGTCTAGAAAGCTTTTATAGGGAGCTCTGCTTGGGGGCCTCCAGGTTC
AGCTTGTGTTGCTTCTCGATGAGGGAGAGCAGGGTCCTGGGCACGTCCAT
GGTCTGGTCATCGACGAGCACTATGTCAAAGGTGTCCATGTACTTCTTCA
TGTTGGCTTCTACGTGGTCGAAGAGGAAGCCGATTTTCATGATGTGTGAG
GAGGCAGGCACCCCGGAGGCCATGTCTGCATCACCAATTGAGTCGCCCAT
GACTATGATGTGGTCCCTGGTGTGCACCAAGTCGTAATACTCGCTGGTCT
CATTTAGCACCGTTTCGTTCTTGTTGAAGGTGTGTATCATCGGCTGCTGA
AAGCCATCTAGAAGGCCATCCCGGAACTGAAGAAAGTTCGAGACTACCTT
CACGTTCGGATGCAAAACGTTGGCCTGGCGAAGAACCGAGACCACCGAGT
TGCCCAGCCCGGCGGAGAAGACAAGCGTGGGAATGCCCAAGCGCTGGAGG
TCCGCAAAGAACTCGTGGGTGCGGTCACGTAGCGCATGCGTGTACTTGCT
GGCTATCTGATCTATTTCCGACTGGTCGAAGGGGAAGCCGCTGGTCAGTT
CGCCAGACTTGGTCCACCACTCGATCATGTACTGCACCTTCTCGGCGATG
GGCATGTGGGGATCGATCTCAATGGGCCGGTACTTGTGGTACAGCTTGTC
CGTCTCCGCCTTAAAGTTTTCCGGCAGCGACTGGCAGGCGTTGAAGATCC
CGAAACTGGAGGGCACTGCTCCTCCATCCTCCGTGCGCTGCTTGGTGATG
GTGTAGTCGAAGTCGGAGACGATTTGCATGCGCTCTGGTCCGCCGATGAC
GAACTCGTTGATGATGCGCTCCACCTCCGCCGGATCCCGCATGCGGCAGT
GGTCCTGGGTGAGGGGCGGAATGTTCTGCAATCGCAATCTGCCGCCGGTG
GGGCTCA
BS09784.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3362-PA | 960 | CG3362-RA | 25..960 | 952..17 | 4580 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-RA | 1530 | CG3362-RA | 399..1334 | 952..17 | 4620 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24195896..24196831 | 952..17 | 4620 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:42:57 has no hits.
BS09784.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:50 Download gff for
BS09784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-PA | 22..960 | 17..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:18 Download gff for
BS09784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-PA | 22..960 | 17..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:46:26 Download gff for
BS09784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 396..1334 | 17..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:49 Download gff for
BS09784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cN-IIIB-RA | 396..1334 | 17..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:49 Download gff for
BS09784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24195893..24196831 | 17..956 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:46:26 Download gff for
BS09784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20083416..20084354 | 17..956 | 99 | | Minus |
BS09784.5prime Sequence
923 bp (844 high quality bases) assembled on 2006-04-19
> BS09784.5prime
GAAGTTATCAGTCGACATGGGCTTTGACGAGAAGCGTGAGCCCACCGGCG
GCAGACTGCGACTGCAGGACATTCCGGCCCTCACCCAGGACCACTGCCGC
ATGCGGGATCCGGCGGAGGTGGAGCGCATCATCAACGAGTTCGTCATCGG
CGGACCAGAGCGCATGCAAATCGTCTCCGACTTCGACTACACCATCACCA
AGCAGCGCACGGAGGATGGAGGAGCAGTGCCCTCCAGTTTCGGGATCTTC
AACGCCTGCCAGTCGCTGCCGGAAAACTTTAAGGCGGAGACGGACAAGCT
GTACCACAAGTACCGGCCCATTGAGATCGATCCCCACATGCCCATCGCCG
AGAAGGTGCAGTACATGATCGAGTGGTGGACCAAGTCTGGCGAACTGACC
AGCGGCTTCCCCTTCGACCAGTCGGAAATAGATCAGATAGCCAGCAAGTA
CACGCATGCGCTACGTGACCGCACCCACGAGTTCTTTGCGGACCTCCAGC
GCTTGGGCATTCCCACGCTTGTCTTCTCCGCCGGGCTGGGCAACTCGGTG
GTCTCGGTTCTTCGCCAGGCCAACGTTTTGCATCCGAACGTGAAGGTAGT
CTCGAACTTTCTTCAGTTCCGGGATGGCCTTCTAGATGGCTTTCAGCAGC
CGATGATACACACCTTCAACAAGAACGAAACGGTGCTAAATGAGACCAGC
GAGTATTACGACTTGGTGCACACCAGGGACCACATCATAGTCATGGGCGA
CTCAATTGGTGATGCAGACATGGCCTCCGGGGTGCCTGCCTCCTCACACA
TCATGAAAATCGGCTTCCTCTTCGACCACGTAGAAGCCAACATGAAGAAG
TACATGGACACCTTTGACATAGTGCTCGTCGATGACCAGACCATGGACGT
GCCCAGGACCCTGCTCTCCCTCA
BS09784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3362-PA | 960 | CG3362-RA | 1..907 | 17..923 | 4535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-RA | 1530 | CG3362-RA | 375..1281 | 17..923 | 4535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24195872..24196778 | 17..923 | 4535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:54:52 has no hits.
BS09784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:19:51 Download gff for
BS09784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:20 Download gff for
BS09784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:25 Download gff for
BS09784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 370..1280 | 12..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:25 Download gff for
BS09784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cN-IIIB-RA | 370..1280 | 12..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:25 Download gff for
BS09784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24195867..24196777 | 12..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:25 Download gff for
BS09784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20083390..20084300 | 12..922 | 99 | | Plus |
BS09784.complete Sequence
992 bp (992 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636480
> BS09784.complete
GAAGTTATCAGTCGACATGGGCTTTGACGAGAAGCGTGAGCCCACCGGCG
GCAGACTGCGACTGCAGGACATTCCGGCCCTCACCCAGGACCACTGCCGC
ATGCGGGATCCGGCGGAGGTGGAGCGCATCATCAACGAGTTCGTCATCGG
CGGACCAGAGCGCATGCAAATCGTCTCCGACTTCGACTACACCATCACCA
AGCAGCGCACGGAGGATGGAGGAGCAGTGCCCTCCAGTTTCGGGATCTTC
AACGCCTGCCAGTCGCTGCCGGAAAACTTTAAGGCGGAGACGGACAAGCT
GTACCACAAGTACCGGCCCATTGAGATCGATCCCCACATGCCCATCGCCG
AGAAGGTGCAGTACATGATCGAGTGGTGGACCAAGTCTGGCGAACTGACC
AGCGGCTTCCCCTTCGACCAGTCGGAAATAGATCAGATAGCCAGCAAGTA
CACGCATGCGCTACGTGACCGCACCCACGAGTTCTTTGCGGACCTCCAGC
GCTTGGGCATTCCCACGCTTGTCTTCTCCGCCGGGCTGGGCAACTCGGTG
GTCTCGGTTCTTCGCCAGGCCAACGTTTTGCATCCGAACGTGAAGGTAGT
CTCGAACTTTCTTCAGTTCCGGGATGGCCTTCTAGATGGCTTTCAGCAGC
CGATGATACACACCTTCAACAAGAACGAAACGGTGCTAAATGAGACCAGC
GAGTATTACGACTTGGTGCACACCAGGGACCACATCATAGTCATGGGCGA
CTCAATTGGTGATGCAGACATGGCCTCCGGGGTGCCTGCCTCCTCACACA
TCATGAAAATCGGCTTCCTCTTCGACCACGTAGAAGCCAACATGAAGAAG
TACATGGACACCTTTGACATAGTGCTCGTCGATGACCAGACCATGGACGT
GCCCAGGACCCTGCTCTCCCTCATCGAGAAGCAACACAAGCTGAACCTGG
AGGCCCCCAAGCAGAGCTCCCTATAAAAGCTTTCTAGACCAT
BS09784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-RA | 960 | CG3362-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-RA | 1530 | CG3362-RA | 375..1334 | 17..976 | 4800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24195872..24196831 | 17..976 | 4800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:14:05 has no hits.
BS09784.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:36:55 Download gff for
BS09784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:22:19 Download gff for
BS09784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 326..1290 | 12..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:37 Download gff for
BS09784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 375..1332 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:36:55 Download gff for
BS09784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 326..1290 | 12..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:14 Download gff for
BS09784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cN-IIIB-RA | 375..1332 | 17..974 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:14 Download gff for
BS09784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24195872..24196829 | 17..974 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:37 Download gff for
BS09784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20083395..20084352 | 17..974 | 100 | | Plus |
BS09784.pep Sequence
Translation from 16 to 975
> BS09784.pep
MGFDEKREPTGGRLRLQDIPALTQDHCRMRDPAEVERIINEFVIGGPERM
QIVSDFDYTITKQRTEDGGAVPSSFGIFNACQSLPENFKAETDKLYHKYR
PIEIDPHMPIAEKVQYMIEWWTKSGELTSGFPFDQSEIDQIASKYTHALR
DRTHEFFADLQRLGIPTLVFSAGLGNSVVSVLRQANVLHPNVKVVSNFLQ
FRDGLLDGFQQPMIHTFNKNETVLNETSEYYDLVHTRDHIIVMGDSIGDA
DMASGVPASSHIMKIGFLFDHVEANMKKYMDTFDIVLVDDQTMDVPRTLL
SLIEKQHKLNLEAPKQSSL*
BS09784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-PA | 319 | CG3362-PA | 1..319 | 1..319 | 1669 | 100 | Plus |
