Clone Sequence Records
BS09791.3prime Sequence
946 bp (845 high quality bases) assembled on 2006-04-19
> BS09791.3prime
ATGGTCTAGAAAGCTTCTACGAGATGAACAGGTAAAGGACGAAGGTGCCC
AAACCGATGTAGTGGCTGAGATAGCCAGCCTGCTGCCAGTGCCACAGGAA
GGAGTCGCCATCCTCGCCGACTTCCAGGTCATCGCCCAGCAGCACGACGC
CCAGATAGGCCAGGTGGAAGATGGCCAGCGCCGTGAATGCCAGATTAGTG
AGCCTCGCCAGCCAGTAGGACAGGGAGTTCAATCGCCGTTTGCTCGGGCA
GTGGCTATACCGACATCGTTCCTTGCCCGGACACAGATTGGCAGTGATGC
AGGCATTCAGGAGGCTGGCGAGCTGCCGCCTGAGCAGCGATTCACCCTCG
GCTAGGAACGCCAGCGAGATGAGCACCAGATAGATGCGCAGATCCATGCC
GTGCAGCAGGCTGGACACCAGATAGGTGGAGAGCACGACCACCAGGATGC
GTCCCCTCGAGGTGGACGCGGTGGGCTTGCAGGGCGCGTAGATGTACCGT
TTGAGCCACTCGTGCATGGGAATGTTCCAGCTCCGGACCAATGAGCTGAT
CGAGCGCGGCCACTCGATGCGCCAGGGCTGCGAGATCAACGGACCCAGCA
TGTCCGACTCCTTGGTGGCACCGTCCAGTCGCTGATCGGAGGCTACCAGC
AGCGCCTGCGCCATCATGCCCACAAAGTAGTGGCTGCTGCGCACACTCAG
TGCGTCCCAGTACATGACCAGGAAGTGCGAGCTATCCCCGAAGAAGTCAC
TCAGCGCCGGAGCCACGCAATTGGACACGGTCACGGCCAGCACGCAGATC
ACCACGTTGGGCAAGAGGCGACGCANGCTGACCAGCCAGCTATTCCGTGG
CACCAGACAGTCCATGTAGCAGCCGAAGCTCACCCAGGGCCCCAAGGCGC
AGGTGGCCGGACTGTAGATGTAGCCCAGGTAAGGCAACGGACCCGG
BS09791.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6205-PA | 1578 | por-RA | 664..1578 | 931..17 | 4556 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
por-RC | 2257 | CG6205-RC | 750..1680 | 946..16 | 4599 | 99.7 | Minus |
por-RB | 1848 | CG6205-RB | 747..1677 | 946..16 | 4599 | 99.7 | Minus |
por-RA | 2331 | CG6205-RA | 747..1677 | 946..16 | 4599 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18378175..18379105 | 16..946 | 4599 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:16:36 has no hits.
BS09791.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:05 Download gff for
BS09791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-PA | 649..1578 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:37 Download gff for
BS09791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6205-PA | 649..1578 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:34:26 Download gff for
BS09791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-RA | 747..1679 | 12..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:58:25 Download gff for
BS09791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-RA | 747..1679 | 12..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:58:25 Download gff for
BS09791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18378173..18379105 | 12..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:34:26 Download gff for
BS09791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18272206..18273138 | 12..946 | 99 | | Plus |
BS09791.5prime Sequence
937 bp (715 high quality bases) assembled on 2006-04-19
> BS09791.5prime
GAAGTTATCAGTCGACATGGACTACCAGTACTTCGAGGAGGAATCGGACT
ACATTGATCTGGACGAGGAGGAGGAGGATGACGACGTGGTGACAGCCGGC
AGCTTGGACCACAGATTTGGGCAGCCAAACGGCGAGGAGGACTATTATTT
CGGCGGGGACGATGTGGAGGAGGAGCTGGTGGTAGATGGACACGGTGTCC
TGGAGCTGGCCGGGCGCCTACTCGAGAGCCTGCAGAGCTGCGTGCAGCCA
TCTGTGCTGCAGGTCATGCAGTATGTGGCGCCCATGCTGCTCCTCTGCCT
CCTGTGCCGCCTGCTGTGCCTCCTCTACTCGCAGCGCAGACGCCTCACCA
GCCTGGCACCGCTGCATTTGTTCCACTTCGCCTGCGGCTTGATTATACTG
CAGATCACGGTGGGCTACCGACTGCTCCTACTTCTCCTGCTGGCCGCCGT
GGGCTACCTGCTGCTCCAGCTATTGCGACTGGGACGAAGAGGAGCTCAAG
TTCTGGCCGTTCTAACCGTGGGCAGCCAGTTCCTGTACGAACTGCTCATT
TGGCGGCGGCGCAGTGACTGGCCACAGCTGCGCGGCATCCAGATGGTGGT
CAATATGAAGCTTATCTCGCTGGGCTTCGACCTGACCGCCAGTGGGCAGC
TGCAGGCGAGGATTCCGGGTCCGTTTGCCTACCTGGGCTACATCTACAGT
CCGGCCACCTGCGCCTTGGGGCCCTGGGTGAGCTTCGGCTGCTACATGGA
CTGTCTGGTGCCACGGAATAGCTGGCTGGTCAGCCTGCGTCGCCTCTTGC
CCCACGTGGTGATCTGCGTGCTGGCCGTGACCGTGTCCAATTGCGTGGCT
CGGGCGCTGAGTGACTTCTTCGGGGATAGCTCGCACTTCCTGGTCATGTA
CTGGGACGCACTGAGTGTGCGCAGCAGCCACTACTTT
BS09791.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6205-PA | 1578 | por-RA | 1..921 | 17..937 | 4555 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
por-RC | 2257 | CG6205-RC | 102..1022 | 17..937 | 4575 | 99.8 | Plus |
por-RB | 1848 | CG6205-RB | 99..1019 | 17..937 | 4575 | 99.8 | Plus |
por-RA | 2331 | CG6205-RA | 99..1019 | 17..937 | 4575 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18378833..18379753 | 937..17 | 4575 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:17:43 has no hits.
BS09791.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:06 Download gff for
BS09791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-PA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:38 Download gff for
BS09791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6205-PA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:34:59 Download gff for
BS09791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-RA | 94..1019 | 13..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:44 Download gff for
BS09791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-RA | 94..1019 | 13..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:44 Download gff for
BS09791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18378833..18379755 | 13..937 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:34:59 Download gff for
BS09791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18272866..18273788 | 13..937 | 99 | | Minus |
BS09791.complete Sequence
1610 bp (1610 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636481
> BS09791.complete
GAAGTTATCAGTCGACATGGACTACCAGTACTTCGAGGAGGAATCGGACT
ACATTGATCTGGACGAGGAGGAGGAGGATGACGACGTGGTGACAGCCGGC
AGCTTGGACCACAGATTTGGGCAGCCAAACGGCGAGGAGGACTATTATTT
CGGCGGGGACGATGTGGAGGAGGAGCTGGTGGTAGATGGACACGGTGTCC
TGGAGCTGGCCGGGCGCCTACTCGAGAGCCTGCAGAGCTGCGTGCAGCCA
TCTGTGCTGCAGGTCATGCAGTATGTGGCGCCCATGCTGCTCCTCTGCCT
CCTGTGCCGCCTGCTGTGCCTCCTCTACTCGCAGCGCAGACGCCTCACCA
GCCTGGCACCGCTGCATTTGTTCCACTTCGCCTGCGGCTTGATTATACTG
CAGATCACGGTGGGCTACCGACTGCTCCTACTTCTCCTGCTGGCCGCCGT
GGGCTACCTGCTGCTCCAGCTATTGCGACTGGGACGAAGAGGAGCTCAAG
TTCTGGCCGTTCTAACCGTGGGCAGCCAGTTCCTGTACGAACTGCTCATT
TGGCGGCGGCGCAGTGACTGGCCACAGCTGCGCGGCATCCAGATGGTGGT
CAATATGAAGCTTATCTCGCTGGGCTTCGACCTGACCGCCAGTGGGCAGC
TGCAGGCGAGGATTCCGGGTCCGTTTGCCTACCTGGGCTACATCTACAGT
CCGGCCACCTGCGCCTTGGGGCCCTGGGTGAGCTTCGGCTGCTACATGGA
CTGTCTGGTGCCACGGAATAGCTGGCTGGTCAGCCTGCGTCGCCTCTTGC
CCAACGTGGTGATCTGCGTGCTGGCCGTGACCGTGTCCAATTGCGTGGCT
CCGGCGCTGAGTGACTTCTTCGGGGATAGCTCGCACTTCCTGGTCATGTA
CTGGGACGCACTGAGTGTGCGCAGCAGCCACTACTTTGTGGGCATGATGG
CGCAGGCGCTGCTGGTAGCCTCCGATCAGCGACTGGACGGTGCCACCAAG
GAGTCGGACATGCTGGGTCCGTTGATCTCGCAGCCCTGGCGCATCGAGTG
GCCGCGCTCGATCAGCTCATTGGTCCGGAGCTGGAACATTCCCATGCACG
AGTGGCTCAAACGGTACATCTACGCGCCCTGCAAGCCCACCGCGTCCACC
TCGAGGGGACGCATCCTGGTGGTCGTGCTCTCCACCTATCTGGTGTCCAG
CCTGCTGCACGGCATGGATCTGCGCATCTATCTGGTGCTCATCTCGCTGG
CGTTCCTAGCCGAGGGTGAATCGCTGCTCAGGCGGCAGCTCGCCAGCCTC
CTGAATGCCTGCATCACTGCCAATCTGTGTCCGGGCAAGGAACGATGTCG
GTATAGCCACTGCCCGAGCAAACGGCGATTGAACTCCCTGTCCTACTGGC
TGGCGAGGCTCACTAATCTGGCATTCACGGCGCTGGCCATCTTCCACCTG
GCCTATCTGGGCGTCGTGCTGCTGGGCGATGACCTGGAAGTCGGCGAGGA
TGGCGACTCCTTCCTGTGGCACTGGCAGCAGGCTGGCTATCTCAGCCACT
ACATCGGTTTGGGCACCTTCGTCCTTTACCTGTTCATCTCGTAGAAGCTT
TCTAGACCAT
BS09791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
por-RC | 1578 | CG6205-PC | 1..1578 | 17..1594 | 7890 | 100 | Plus |
por-RB | 1578 | CG6205-PB | 1..1578 | 17..1594 | 7890 | 100 | Plus |
por-RA | 1578 | CG6205-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
por-RC | 2257 | CG6205-RC | 102..1680 | 17..1595 | 7895 | 100 | Plus |
por-RB | 1848 | CG6205-RB | 99..1677 | 17..1595 | 7895 | 100 | Plus |
por-RA | 2331 | CG6205-RA | 99..1677 | 17..1595 | 7895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18378175..18379753 | 1595..17 | 7895 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:24:54 has no hits.
BS09791.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:24 Download gff for
BS09791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-RA | 1..1578 | 17..1594 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:22 Download gff for
BS09791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-RA | 94..1679 | 13..1599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:28 Download gff for
BS09791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-RA | 99..1676 | 17..1594 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:25 Download gff for
BS09791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-RA | 94..1679 | 13..1599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:40 Download gff for
BS09791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
por-RA | 99..1676 | 17..1594 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:40 Download gff for
BS09791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18378176..18379753 | 17..1594 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:28 Download gff for
BS09791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18272209..18273786 | 17..1594 | 100 | | Minus |
BS09791.pep Sequence
Translation from 16 to 1593
> BS09791.pep
MDYQYFEEESDYIDLDEEEEDDDVVTAGSLDHRFGQPNGEEDYYFGGDDV
EEELVVDGHGVLELAGRLLESLQSCVQPSVLQVMQYVAPMLLLCLLCRLL
CLLYSQRRRLTSLAPLHLFHFACGLIILQITVGYRLLLLLLLAAVGYLLL
QLLRLGRRGAQVLAVLTVGSQFLYELLIWRRRSDWPQLRGIQMVVNMKLI
SLGFDLTASGQLQARIPGPFAYLGYIYSPATCALGPWVSFGCYMDCLVPR
NSWLVSLRRLLPNVVICVLAVTVSNCVAPALSDFFGDSSHFLVMYWDALS
VRSSHYFVGMMAQALLVASDQRLDGATKESDMLGPLISQPWRIEWPRSIS
SLVRSWNIPMHEWLKRYIYAPCKPTASTSRGRILVVVLSTYLVSSLLHGM
DLRIYLVLISLAFLAEGESLLRRQLASLLNACITANLCPGKERCRYSHCP
SKRRLNSLSYWLARLTNLAFTALAIFHLAYLGVVLLGDDLEVGEDGDSFL
WHWQQAGYLSHYIGLGTFVLYLFIS*
BS09791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
por-PC | 525 | CG6205-PC | 1..525 | 1..525 | 2738 | 100 | Plus |
por-PB | 525 | CG6205-PB | 1..525 | 1..525 | 2738 | 100 | Plus |
por-PA | 525 | CG6205-PA | 1..525 | 1..525 | 2738 | 100 | Plus |