Clone Sequence Records
BS09803.3prime Sequence
899 bp (871 high quality bases) assembled on 2006-04-19
> BS09803.3prime
ATGGTCTAGAAAGCTTCTACTTCATCTTTTTCTGATGCAGCAGATGTTTT
CTCAGCGCCTGCTGCTTGTCCTTGAAGCTCTTCTTAACCTTGGAGCGAGC
CTTGTGTCGCAGCATGCCAAAGTTCTTGGTTTTGCGCTTCTCGCGGTTCG
TCTTGGAACAGTGCTCGTTCACGCGCCCATCCTTCCAGCCAAAGCGCTCG
CGATCCTGCCGGCCCGCCTGCACAGTCTCCAGCCGCGACTCCTTGTCGTG
CTTGCGCTTCTTGTAGATCATCTCGATGCTGTTCAGCTTGACGAACTCGG
CGCGATCCTGTTCAAGTGGTCTCTTGCGGGCACTGGTTACGGTCTTCTTA
AGATTAGCCGCGTTGATGCGCTTGAAATCTTCGTCCGTGAATATGCGAGT
AAGAGCCAGTTCCTGTGCAGCCTCCTTTTGGTTAAGGATCCTCATATCTT
TCTTTTCCTTCTTGGCCTTTGCGGACTCTTCGCCACTTTCCACGCCTTCG
TCGGAATTATCTTCATCCTCATTCTCCTCGTCATTACTGTTCTCTTCGTC
TTCGTCTTCGTCATCATCGTCCTCATCCTCATCTTCGTCTTCTTCATCAT
CGTCCGCTCCACCACCCTCACCATCACTGTGCGCCACGTTAACCCATTCA
CCATCGTTTGAGTCCGTATCGTCTTCGCTCTCTATGTCAATAGTCTTAGA
GTCCTTGAGCAGAGCCTCTGCACCCAAGACAGTGTCGTGGACTTCGCGCT
CTCCGTAGGCTCGAACCTTTCGTTCGGCCTGGGCCTCTGTCTGCCTGCCT
CGGTCCTTTTTGTGCAACAGGGCAGGCAGCTGTTCCCTGTAGAGTGTGAT
TAGCGACCGTGCCGCCATCATCACCGACTTCTCCTTGTACGTTTTGTAC
BS09803.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8070-PA | 2139 | Mys45A-RA | 1257..2139 | 899..17 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2385 | CG8070-RA | 1337..2219 | 899..17 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9111671..9112553 | 17..899 | 4415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:51:58 has no hits.
BS09803.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:15 Download gff for
BS09803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8070-PA | 1257..2139 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:51 Download gff for
BS09803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8070-PA | 1257..2139 | 17..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:03 Download gff for
BS09803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 1337..2227 | 8..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:59:51 Download gff for
BS09803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 1337..2227 | 8..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:59:51 Download gff for
BS09803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9111663..9112553 | 8..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:03 Download gff for
BS09803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4999168..5000058 | 8..899 | 99 | | Plus |
BS09803.5prime Sequence
826 bp (824 high quality bases) assembled on 2006-04-19
> BS09803.5prime
GAAGTTATCAGTCGACATGGTGCGGCCCAACAACAACCAGCTGCCGGAGA
ACCTTCCGCAGTTGCAGAACCTCATCAAGCGGGATCCGGAGTCGTATAGC
GATGAGTTCCACATCCAGTACCAACACTTTCTTAGCTTGCTGGAAGTTTT
TGCGCTGAATCCCAGCGAAGAAAACAAATCCCTGGATGACATCGTCATGT
TTGTCGCCCAGGTGGCTCAGTGCTATCCGGCCGTCTGCGAGGAGTTCCCA
AAGCGTCTTTCCGATTTGCTGAAGAACTATGCCACCGTTCTGGACCCGGC
TATGCGTAACTGCTTTGTGAAAGCTCTAATCCTGCTGAGAAACAAGAACC
TAGTGCCCGCGCTGGACATACTGGAACTGTTCTTTCAGTTGCTGCGGTGT
CCGGACAAGAATCTGCGCACCTTTCTGCAAACGCACATTGTGACGGACAT
CAAGAATATGAATGCCAAGCACAAGGACATGAAGCTCAATTCGAGCCTGC
AGGCATTCATGTACTCCATGCTGAAGGATGCCAATCCGAAGGCAGCCAAG
ATGTCCGCTGATATCATGATCGAGCTGTACAAGAAAAACATATGGAATGA
TTCTAAGACGGTGAATGTCATAGCCACTGTGGGGTGCTTCTCTAAGGTAA
CAAAAGTACTGGTCACCTCGCTCAAGTTCTTCCTCGGCCACGACGAAGAG
GATGAAGAGGAGGACACTGACAGCGAGAACGAGGTGGACCTTAAGGGTGC
TCTGATGGCCAATCGAGTCAATAAGAAAACCAAGAAGCGGACCAAGCAAC
TGGCGCAGATCAAAAAGCAAGCGGTG
BS09803.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8070-PA | 2139 | Mys45A-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2385 | CG8070-RA | 80..890 | 16..826 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9113395..9113872 | 493..16 | 2390 | 100 | Minus |
| 2R | 25286936 | 2R | 9113000..9113333 | 826..493 | 1670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:07:20 has no hits.
BS09803.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:16 Download gff for
BS09803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8070-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:53 Download gff for
BS09803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8070-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:42:20 Download gff for
BS09803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 76..890 | 8..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:44 Download gff for
BS09803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 76..890 | 8..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:44 Download gff for
BS09803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9113000..9113332 | 494..826 | 100 | <- | Minus |
| 2R | 9113395..9113876 | 8..493 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:42:20 Download gff for
BS09803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5000505..5000837 | 494..826 | 100 | <- | Minus |
| arm_2R | 5000900..5001381 | 8..493 | 99 | | Minus |
BS09803.complete Sequence
2171 bp assembled on 2008-01-16
GenBank Submission: FJ636482
> BS09803.complete
GAAGTTATCAGTCGACATGGTGCGGCCCAACAACAACCAGCTGCCGGAGA
ACCTTCCGCAGTTGCAGAACCTCATCAAGCGGGATCCGGAGTCGTATAGC
GATGAGTTCCACATCCAGTACCAACACTTTCTTAGCTTGCTGGAAGTTTT
TGCGCTGAATCCCAGCGAAGAAAACAAATCCCTGGATGACATCGTCATGT
TTGTCGCCCAGGTGGCTCAGTGCTATCCGGCCGTCTGCGAGGAGTTCCCA
AAGCGTCTTTCCGATTTGCTGAAGAACTATGCCACCGTTCTGGACCCGGC
TATGCGTAACTGCTTTGTGAAAGCTCTAATCCTGCTGAGAAACAAGAACC
TAGTGCCCGCGCTGGACATACTGGAACTGTTCTTTCAGTTGCTGCGGTGT
CCGGACAAGAATCTGCGCACCTTTCTGCAAACGCACATTGTGACGGACAT
CAAGAATATGAATGCCAAGCACAAGGACATGAAGCTCAATTCGAGCCTGC
AGGCATTCATGTACTCCATGCTGAAGGATGCCAATCCGAAGGCAGCCAAG
ATGTCCGCTGATATCATGATCGAGCTGTACAAGAAAAACATATGGAATGA
TTCTAAGACGGTGAATGTCATAGCCACTGTGGGGTGCTTCTCTAAGGTAA
CAAAAGTACTGGTCACCTCGCTCAAGTTCTTCCTCGGCCACGACGAAGAG
GATGAAGAGGAGGACACTGACAGCGAGAACGAGGTGGACCTTAAGGGTGC
TCTGATGGCCAATCGAGTCAATAAGAAAACCAAGAAGCGGACCAAGCAAC
TGGCGCAGATCAAAAAGCAAGCGGTGAAGGCCCAGAAAAAGAAAAAGAAC
GCTCCAGCCTTTAACTTCTCAGGCATTCACCTGGTGCACAATCCGCAGGG
AATGGCCGAAGGGCTCTTTAAGCAGCTGCAGGCCACCAACGAGCGATTTG
AGGTGAAGCTAATGCATTTGGACGTTATTTCCCGGCTGATCGGCATCCAC
GACCTCTTCCTTTTCGGTTTCTATCCGTACATAACACGCTTTCTGCAACC
CCACCAACGCCAGGTGACACGTGTGCTCCAGTTTGCCGCCCAAGCGTCCC
ACGAACTGGTTCCCGGAGACATCATCGAGCCTATCCTAAAGACGATCGCC
AACAACTTCATTACTGAACGCAACTCCAGCGATGTGATGGCCATAGGTCT
GAATGCGACGCGTGAGATTTGCATGCGATGTCCCCTGGCCATGGGCGAGG
ATTTGCTGCAGGACCTGGCAATGTACAAAACGTACAAGGAGAAGTCGGTG
ATGATGGCGGCACGGTCGCTAATCACACTCTACAGGGAACAGCTGCCTGC
CCTGTTGCACAAAAAGGACCGAGGCAGGCAGACAGAGGCCCAGGCCGAAC
GAAAGGTTCGAGCCTACGGAGAGCGCGAAGTCCACGACACTGTCTTGGGT
GCAGAGGCTCTGCTCAAGGACTCTAAGACTATTGACATAGAGAGCGAAGA
CGATACGGACTCAAACGATGGTGAATGGGTTAACGTGGCGCACAGTGATG
GTGAGGGTGGTGGAGCGGACGATGATGAAGAAGACGAAGATGAGGATGAG
GACGATGATGACGAAGACGAAGACGAAGAGAACAGTAATGACGAGGAGAA
TGAGGATGAAGATAATTCCGACGAAGGCGTGGAAAGTGGCGAAGAGTCCG
CAAAGGCCAAGAAGGAAAAGAAAGATATGAGGATCCTTAACCAAAAGGAG
GCTGCACAGGAACTGGCTCTTACTCGCATATTCACGGACGAAGATTTCAA
GCGCATCAACGCGGCTAATCTTAAGAAGACCGTAACCAGTGCCCGCAAGA
GACCACTTGAACAGGATCGCGCCGAGTTCGTCAAGCTGAACAGCATCGAG
ATGATCTACAAGAAGCGCAAGCACGACAAGGAGTCGCGGCTGGAGACTGT
GCAGGCGGGCCGGCAGGATCGCGAGCGCTTTGGCTGGAAGGATGGGCGCG
TGAACGAGCACTGTTCCAAGACGAACCGCGAGAAGCGCAAAACCAAGAAC
TTTGGCATGCTGCGACACAAGGCTCGCTCCAAGGTTAAGAAGAGCTTCAA
GGACAAGCAGCAGGCGCTGAGAAAACATCTGCTGCATCAGAAAAAGATGA
AGTAGAAGCTTTCTAGACCAT
BS09803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2139 | CG8070-PA | 1..2139 | 17..2155 | 10695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2385 | CG8070-RA | 80..2219 | 16..2155 | 10700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9111671..9113333 | 2155..493 | 8315 | 100 | Minus |
| 2R | 25286936 | 2R | 9113395..9113872 | 493..16 | 2390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:43:31 has no hits.
BS09803.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:33 Download gff for
BS09803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 1..2139 | 17..2155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:35 Download gff for
BS09803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 83..2221 | 17..2155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:21 Download gff for
BS09803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 81..2219 | 17..2155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:33 Download gff for
BS09803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 78..2229 | 8..2164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:25 Download gff for
BS09803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 81..2219 | 17..2155 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:25 Download gff for
BS09803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9111671..9113332 | 494..2155 | 100 | <- | Minus |
| 2R | 9113395..9113871 | 17..493 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:21 Download gff for
BS09803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4999176..5000837 | 494..2155 | 100 | <- | Minus |
| arm_2R | 5000900..5001376 | 17..493 | 100 | | Minus |
BS09803.pep Sequence
Translation from 16 to 2154
> BS09803.pep
MVRPNNNQLPENLPQLQNLIKRDPESYSDEFHIQYQHFLSLLEVFALNPS
EENKSLDDIVMFVAQVAQCYPAVCEEFPKRLSDLLKNYATVLDPAMRNCF
VKALILLRNKNLVPALDILELFFQLLRCPDKNLRTFLQTHIVTDIKNMNA
KHKDMKLNSSLQAFMYSMLKDANPKAAKMSADIMIELYKKNIWNDSKTVN
VIATVGCFSKVTKVLVTSLKFFLGHDEEDEEEDTDSENEVDLKGALMANR
VNKKTKKRTKQLAQIKKQAVKAQKKKKNAPAFNFSGIHLVHNPQGMAEGL
FKQLQATNERFEVKLMHLDVISRLIGIHDLFLFGFYPYITRFLQPHQRQV
TRVLQFAAQASHELVPGDIIEPILKTIANNFITERNSSDVMAIGLNATRE
ICMRCPLAMGEDLLQDLAMYKTYKEKSVMMAARSLITLYREQLPALLHKK
DRGRQTEAQAERKVRAYGEREVHDTVLGAEALLKDSKTIDIESEDDTDSN
DGEWVNVAHSDGEGGGADDDEEDEDEDEDDDDEDEDEENSNDEENEDEDN
SDEGVESGEESAKAKKEKKDMRILNQKEAAQELALTRIFTDEDFKRINAA
NLKKTVTSARKRPLEQDRAEFVKLNSIEMIYKKRKHDKESRLETVQAGRQ
DRERFGWKDGRVNEHCSKTNREKRKTKNFGMLRHKARSKVKKSFKDKQQA
LRKHLLHQKKMK*
BS09803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-PA | 712 | CG8070-PA | 1..712 | 1..712 | 3658 | 100 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 760..843 | 490..570 | 168 | 35.7 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 760..843 | 490..570 | 168 | 35.7 | Plus |
