Clone Sequence Records
BS09804.3prime Sequence
908 bp (875 high quality bases) assembled on 2006-04-19
> BS09804.3prime
ATGGTCTAGAAAGCTTCTAGAGCTCGTCGGAGAGATGGTTAATGTTTTGT
AAATGGTCGCCGTAGTCGGTGGCCTCACTGCCCACAAAGGTATCGTAGTT
GTTGAGTATTTCCAGGTAGGACAGGCGATCGTCGTGATCCTCATCGGTGG
AGACAAAGAGATGGTCCACCTCGTCGTTGGCAATTGCCGTATTGCTTGGC
ACAATCCAGGATAAGACCTCATCGCCCGTCAGCACGCCATCGCCATTGGA
GTCGTGATCCTTGTCGAAGCGCTCCTTCTCCGTGATCAGCCACTCCTTGT
CGTGGTGCGAGGCTGCGTCGCCGACAAACTCCTGGAAGTTGATCTTGCCA
TCGTGATCCGCATCTTTGTCCTGCATCGTGTGCTCCAGCAGTATTGGCAA
CATTTGTGGATGCTCCTCGGGATTTTGGAATAAAACGAATTCCTCCAGCG
TCAGCACACCATCCTTGTTCGTGTCGGCCGCATTGAACATCTCCTTGTCC
TGCTTGATCATCTTCTGCTCATCCTCGTAGCTGTCGTAGTCGATGGTCTC
CTTCTTGAAGTCCTCATCCTCCATGGCGTATGTGTCCTGGAGATACTCCT
TCCACGTAATTCTCTCGTCCGCATCCTGGTCTATTTCTTCAAATCGATCA
GCGGCTTCTTCCTCCGACAGTTTTTTAAAGGACCTTAATATCCAGGCTTT
CAACTCATGCCGGTCAATAAATTCGTCCTTATTCAGATCCATCATTTTGA
TCAATATCAACAGTCGTCGCTTCGATTCGTCTGGCGAAAGTGAGTCGAAT
TCCTGAGCCTCTTTCGTGTTGCCGATGATGGCCTCGTGATCGAACTCCAC
GTTGTGCTCCCCATCCCTCGCGTGGTGGTGGGCATCCCGGGGAGCGTAGA
TGCCGTCC
BS09804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31650-PA | 1029 | CG31650-RA | 180..1029 | 866..17 | 4250 | 100 | Minus |
| CG31650-PB | 1029 | CG31650-RB | 180..1029 | 866..17 | 4250 | 100 | Minus |
| CG31650-PC | 1029 | CG31650-RC | 180..1029 | 866..17 | 4250 | 100 | Minus |
| CG31650-PA | 1029 | CG31650-RA | 138..175 | 908..871 | 190 | 100 | Minus |
| CG31650-PB | 1029 | CG31650-RB | 138..175 | 908..871 | 190 | 100 | Minus |
| CG31650-PC | 1029 | CG31650-RC | 138..175 | 908..871 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31650-RF | 1614 | CG31650-RF | 489..1381 | 908..16 | 4420 | 99.8 | Minus |
| CG31650-RE | 1515 | CG31650-RE | 390..1282 | 908..16 | 4420 | 99.8 | Minus |
| CG31650-RD | 1615 | CG31650-RD | 490..1382 | 908..16 | 4420 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5040881..5041539 | 16..674 | 3295 | 100 | Plus |
| 2L | 23513712 | 2L | 5041689..5041837 | 675..823 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 5042490..5042576 | 822..908 | 375 | 95.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:39:23 has no hits.
BS09804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:17 Download gff for
BS09804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-PA | 138..1029 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:54 Download gff for
BS09804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-PC | 138..1029 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:48:59 Download gff for
BS09804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-RD | 490..1390 | 9..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:56 Download gff for
BS09804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-RD | 490..1390 | 9..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:56 Download gff for
BS09804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5042491..5042576 | 823..908 | 97 | | Plus |
| 2L | 5040873..5041539 | 9..674 | 99 | <- | Plus |
| 2L | 5041689..5041836 | 675..822 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:48:59 Download gff for
BS09804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5040873..5041539 | 9..674 | 99 | <- | Plus |
| arm_2L | 5041689..5041836 | 675..822 | 100 | <- | Plus |
| arm_2L | 5042491..5042576 | 823..908 | 97 | | Plus |
BS09804.5prime Sequence
946 bp (859 high quality bases) assembled on 2006-04-19
> BS09804.5prime
GAAGTTATCAGTCGACATGCCTAGGAATCTGCCGCTCCTCCCGCTGACCC
TCTGTGCCGTCGCCTTGCTGGCCGCCGTGGGTCCCATGCCCGCCCATGGG
GCGGTGGCCAACAGTCACAAGCACGAGAAGCACCTTAGCAAGGAGCGGGT
CAAGGACGGCATCTACGCTCCCCGGGATGCCCACCACCACGGCGAGGATG
GGGAGCACAACGTGGAGTTCGATCACGAGGCCATCATCGGCAACACGAAA
GAGGCTCAGGAATTCGACTCACTTTCGCCAGACGAATCGAAGCGACGACT
GTTGATATTGATCAAAATGATGGATCTGAATAAGGACGAATTTATTGACC
GGCATGAGTTGAAAGCCTGGATATTAAGGTCCTTTAAAAAACTGTCGGAG
GAAGAAGCCGCTGATCGATTTGAAGAAATAGACCAGGATGCGGACGAGAG
AATTACGTGGAAGGAGTATCTCCAGGACACATACGCCATGGAGGATGAGG
ACTTCAAGAAGGAGACCATCGACTACGACAGCTACGAGGATGAGCAGAAG
ATGATCAAGCAGGACAAGGAGATGTTCAATGCGGCCGACACGAACAAGGA
TGGTGTGCTGACGCTGGAGGAATTCGTTTTATTCCAAAATCCCGAGGAGC
ATCCACAAATGTTGCCAATACTGCTGGAGCACACGATGCAGGACAAAGAT
GCGGATCACGATGGCAAGATCAACTTCCAGGAGTTTGTCGGCGACGCAGC
CTCGCACCACGACAAGGAGTGGCTGATCACGGAGAAGGAGCGCTTCGACA
AGGATCACGACTCCAATGGCGATGGCGTGCTGACGGGCGATGAGGTCTTA
TCCTGGATTGTNNGCAGCAATACGGCAATTTGCCACGACGAGGTGGACCA
TCTCTTTGTCTCCACCGATGAGGATCACGACGATCGCCTGTCCTAC
BS09804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31650-PA | 1029 | CG31650-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG31650-PB | 1029 | CG31650-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG31650-PC | 1029 | CG31650-RC | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG31650-PA | 1029 | CG31650-RA | 869..930 | 885..946 | 310 | 100 | Plus |
| CG31650-PB | 1029 | CG31650-RB | 869..930 | 885..946 | 310 | 100 | Plus |
| CG31650-PC | 1029 | CG31650-RC | 869..930 | 885..946 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31650-RF | 1614 | CG31650-RF | 352..1281 | 17..946 | 4553 | 99.4 | Plus |
| CG31650-RE | 1515 | CG31650-RE | 253..1182 | 17..946 | 4553 | 99.4 | Plus |
| CG31650-RD | 1615 | CG31650-RD | 353..1282 | 17..946 | 4553 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5040981..5041539 | 946..388 | 2698 | 98.7 | Minus |
| 2L | 23513712 | 2L | 5042490..5042713 | 240..17 | 1120 | 100 | Minus |
| 2L | 23513712 | 2L | 5041689..5041837 | 387..239 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:57:58 has no hits.
BS09804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:18 Download gff for
BS09804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:33:55 Download gff for
BS09804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-PC | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:41:55 Download gff for
BS09804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-RD | 343..1282 | 7..946 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:55:49 Download gff for
BS09804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-RD | 343..1282 | 7..946 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:55:49 Download gff for
BS09804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5040981..5041539 | 388..946 | 98 | <- | Minus |
| 2L | 5041689..5041836 | 240..387 | 100 | <- | Minus |
| 2L | 5042491..5042723 | 7..239 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:41:55 Download gff for
BS09804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5042491..5042723 | 7..239 | 98 | | Minus |
| arm_2L | 5041689..5041836 | 240..387 | 100 | <- | Minus |
| arm_2L | 5040981..5041539 | 388..946 | 98 | <- | Minus |
BS09804.complete Sequence
1061 bp (1061 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636483
> BS09804.complete
GAAGTTATCAGTCGACATGCCTAGGAATCTGCCGCTCCTCCCGCTGACCC
TCTGTGCCGTCGCCTTGCTGGCCGCCGTGGGTCCCATGCCCGCCCATGGG
GCGGTGGCCAACAGTCACAAGCACGAGAAGCACCTTAGCAAGGAGCGGGT
CAAGGACGGCATCTACGCTCCCCGGGATGCCCACCACCACGGCGAGGATG
GGGAGCACAACGTGGAGTTCGATCACGAGGCCATCATCGGCAACACGAAA
GAGGCTCAGGAATTCGACTCACTTTCGCCAGACGAATCGAAGCGACGACT
GTTGATATTGATCAAAATGATGGATCTGAATAAGGACGAATTTATTGACC
GGCATGAGTTGAAAGCCTGGATATTAAGGTCCTTTAAAAAACTGTCGGAG
GAAGAAGCCGCTGATCGATTTGAAGAAATAGACCAGGATGCGGACGAGAG
AATTACGTGGAAGGAGTATCTCCAGGACACATACGCCATGGAGGATGAGG
ACTTCAAGAAGGAGACCATCGACTACGACAGCTACGAGGATGAGCAGAAG
ATGATCAAGCAGGACAAGGAGATGTTCAATGCGGCCGACACGAACAAGGA
TGGTGTGCTGACGCTGGAGGAATTCGTTTTATTCCAAAATCCCGAGGAGC
ATCCACAAATGTTGCCAATACTGCTGGAGCACACGATGCAGGACAAAGAT
GCGGATCACGATGGCAAGATCAACTTCCAGGAGTTTGTCGGCGACGCAGC
CTCGCACCACGACAAGGAGTGGCTGATCACGGAGAAGGAGCGCTTCGACA
AGGATCACGACTCCAATGGCGATGGCGTGCTGACGGGCGATGAGGTCTTA
TCCTGGATTGTGCCAAGCAATACGGCAATTGCCAACGACGAGGTGGACCA
TCTCTTTGTCTCCACCGATGAGGATCACGACGATCGCCTGTCCTACCTGG
AAATACTCAACAACTACGATACCTTTGTGGGCAGTGAGGCCACCGACTAC
GGCGACCATTTACAAAACATTAACCATCTCTCCGACGAGCTCTAGAAGCT
TTCTAGACCAT
BS09804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31650-RF | 1029 | CG31650-PF | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| CG31650-RE | 1029 | CG31650-PE | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| CG31650-RD | 1029 | CG31650-PD | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31650-RF | 1614 | CG31650-RF | 352..1381 | 17..1046 | 5150 | 100 | Plus |
| CG31650-RE | 1515 | CG31650-RE | 253..1282 | 17..1046 | 5150 | 100 | Plus |
| CG31650-RD | 1615 | CG31650-RD | 353..1382 | 17..1046 | 5150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5040881..5041539 | 1046..388 | 3295 | 100 | Minus |
| 2L | 23513712 | 2L | 5042490..5042713 | 240..17 | 1120 | 100 | Minus |
| 2L | 23513712 | 2L | 5041689..5041837 | 387..239 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:59:53 has no hits.
BS09804.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:49 Download gff for
BS09804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-RC | 1..1029 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:30 Download gff for
BS09804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-RC | 243..1290 | 7..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:43 Download gff for
BS09804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-RD | 353..1381 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:49 Download gff for
BS09804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-RC | 243..1290 | 7..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:36 Download gff for
BS09804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31650-RD | 353..1381 | 17..1045 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:36 Download gff for
BS09804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5040882..5041539 | 388..1045 | 100 | <- | Minus |
| 2L | 5041689..5041836 | 240..387 | 100 | <- | Minus |
| 2L | 5042491..5042713 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:43 Download gff for
BS09804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5040882..5041539 | 388..1045 | 100 | <- | Minus |
| arm_2L | 5041689..5041836 | 240..387 | 100 | <- | Minus |
| arm_2L | 5042491..5042713 | 17..239 | 100 | | Minus |
BS09804.pep Sequence
Translation from 16 to 1044
> BS09804.pep
MPRNLPLLPLTLCAVALLAAVGPMPAHGAVANSHKHEKHLSKERVKDGIY
APRDAHHHGEDGEHNVEFDHEAIIGNTKEAQEFDSLSPDESKRRLLILIK
MMDLNKDEFIDRHELKAWILRSFKKLSEEEAADRFEEIDQDADERITWKE
YLQDTYAMEDEDFKKETIDYDSYEDEQKMIKQDKEMFNAADTNKDGVLTL
EEFVLFQNPEEHPQMLPILLEHTMQDKDADHDGKINFQEFVGDAASHHDK
EWLITEKERFDKDHDSNGDGVLTGDEVLSWIVPSNTAIANDEVDHLFVST
DEDHDDRLSYLEILNNYDTFVGSEATDYGDHLQNINHLSDEL*
BS09804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31650-PF | 342 | CG31650-PF | 1..342 | 1..342 | 1818 | 100 | Plus |
| CG31650-PE | 342 | CG31650-PE | 1..342 | 1..342 | 1818 | 100 | Plus |
| CG31650-PD | 342 | CG31650-PD | 1..342 | 1..342 | 1818 | 100 | Plus |
| CG31650-PC | 342 | CG31650-PC | 1..342 | 1..342 | 1818 | 100 | Plus |
| CG31650-PB | 342 | CG31650-PB | 1..342 | 1..342 | 1818 | 100 | Plus |
