Clone Sequence Records
BS09811.3prime Sequence
908 bp (872 high quality bases) assembled on 2006-04-19
> BS09811.3prime
ATGGTCTAGAAAGCTTCTAAGGTAAATCGTCCAAGGTGCCGGTAGCCTTC
AACTTATTACGCATCATATCGCTCCATGACTGTTTTCCCAGGCGCACGCC
CTTGTCGCCTGTGCTGCTTACTTCCAGTCGATTTGTATTTGGATTGCTTA
GCACGAATTTGTTCTTGCTCTCGTTGAGAGCATGGGCTACATGCTCCAGT
TCGTTTTCCAATTTCACTTCGGGGGCTGTTACCTCGATGTGAAGATTCTG
CTCTATGGCTTGGGAAATGTGTATGATAGCCTCTTCTAATAAGTTCTCGG
CGTCGATTTTGTTGCTCCCCACTAGCTCAGAGAGTTGGACATTTAAATTT
CCTCCTTTGGTAGTTATTTGAATATTGCCATGTACTCCAGTCATATTGAG
ATCCGACGACTGATGGACGTGCACTTCGCTGCTTTTGTGGACATTCTTGA
GCTCCAGACGCCCAGTTTGTGTCTGAAACTTTGACTTTTCCACATAACAA
CAATCGGTTACAATACTGCCAGCTTTGGTGGAACAATTCAAGCTGTCTCC
TTGCAACTTATCCATCGCAATGTTCCCATTTTGTGACTCTATTTGGGTAA
TCTTGCCCAGCAATGTGCCCTGGCAATTGATGTTGCCATTTTCACTGTAC
AAGTTTATATGGGTGGCCTTGATATTTTTGGTAAGGATGCCTTCCTTTGC
TTTGACTTGCAGCAGTTCACTCTGTATGCCTTCCACTCGCACACTACCTT
TTGCGTCCACAGAGACATCGGAACGCACAGGTATTTGCAGATGGCATTCA
AGCTTTGAGGGCTGCTCCGCCAGTTGTTTAACCACCACATTGACCACCTT
GTCCTCATCGGTTACCTTCACATCGAGAGAGACATTCGAGTTCTTGACAT
GGCCGCCC
BS09811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8187-PA | 1131 | CG8187-RA | 241..1131 | 907..17 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8187-RA | 1698 | CG8187-RA | 332..1222 | 907..17 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15540030..15540403 | 17..390 | 1870 | 100 | Plus |
2R | 25286936 | 2R | 15540700..15541032 | 575..907 | 1665 | 100 | Plus |
2R | 25286936 | 2R | 15540457..15540641 | 391..575 | 925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 16:32:32 has no hits.
BS09811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:30 Download gff for
BS09811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-PA | 240..1131 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:10 Download gff for
BS09811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-PA | 240..1131 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:03 Download gff for
BS09811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-RA | 331..1222 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:16:40 Download gff for
BS09811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-RA | 331..1222 | 17..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:16:40 Download gff for
BS09811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15540030..15540403 | 17..390 | 100 | <- | Plus |
2R | 15540457..15540640 | 391..574 | 100 | <- | Plus |
2R | 15540700..15541032 | 575..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:03 Download gff for
BS09811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11427535..11427908 | 17..390 | 100 | <- | Plus |
arm_2R | 11427962..11428145 | 391..574 | 100 | <- | Plus |
arm_2R | 11428205..11428537 | 575..908 | 99 | | Plus |
BS09811.5prime Sequence
899 bp (810 high quality bases) assembled on 2006-04-19
> BS09811.5prime
GAAGTTATCAGTCGACATGCTTCTGCAACGCGTGTGGTTGACACATTTAA
ACAACCATCTACGCCAATACGCGAACAAGTCGCGAGCCCACATCAAACCA
GCCATGGCCGTGAGCATGCGGATGGTCCATCAGGAGATCCTGCATTATGT
AAACCCCTTTGCCAGGATCAACGTGAAGTCCGATGTTTTCCTGCGCATCC
AGCCCGCGGATGTGCATCAGTATACCAGCGGGGATGTGTTTATCGCCCAA
CTGGTTGGCGGCCATGTCAAGAACTCGAATGTCTCTCTCGATGTGAAGGT
AACCGATGAGGACAAGGTGGTCAATGTGGTGGTTAAACAACTGGCGGAGC
AGCCCTCAAAGCTTGAATGCCATCTGCAAATACCTGTGCGTTCCGATGTC
TCTGTGGACGCAAAAGGTAGTGTGCGAGTGGAAGGCATACAGAGTGAACT
GCTGCAAGTCAAAGCAAAGGAAGGCATCCTTACCAAAAATATCAAGGCCA
CCCATATAAACTTGTACAGTGAAAATGGCAACATCAATTGCCAGGGCACA
TTGCTGGGCAAGATTACCCAAATAGAGTCACAAAATGGGAACATTGCGAT
GGATAAGTTGCAAGGAGACAGCTTGAATTGTTCCACCAAAGCTGGCAGTA
TTGTAACCGATTGTTGTTATGTGGAAAAGTCAAAGTTTCAGACACAAACT
GGGCGTCTGGAGCTCAAGAATGTCCACAAAAGCAGCGAAGTGCACGTCCA
TCAGTCGTCGGATCTCAATATGACTGGAGTACATGGCAATATTCAAATAA
CTACCAAAGGAGGAAATTTAAATGTCCAACTCTCTGAGCTAGTGGGGAGC
AACAAAATCGACGCCGAGAACTTATTAGAAGAGGCTATCATACACATTT
BS09811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8187-PA | 1131 | CG8187-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8187-RA | 1698 | CG8187-RA | 92..974 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15540700..15541272 | 589..17 | 2865 | 100 | Minus |
2R | 25286936 | 2R | 15540457..15540641 | 773..589 | 925 | 100 | Minus |
2R | 25286936 | 2R | 15540278..15540403 | 899..774 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:05:56 has no hits.
BS09811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:31 Download gff for
BS09811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:12 Download gff for
BS09811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:39 Download gff for
BS09811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-RA | 92..974 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:02 Download gff for
BS09811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-RA | 92..974 | 17..899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:02 Download gff for
BS09811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15540278..15540403 | 774..899 | 100 | <- | Minus |
2R | 15540457..15540640 | 590..773 | 100 | <- | Minus |
2R | 15540700..15541277 | 11..589 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:39 Download gff for
BS09811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11427783..11427908 | 774..899 | 100 | <- | Minus |
arm_2R | 11427962..11428145 | 590..773 | 100 | <- | Minus |
arm_2R | 11428205..11428782 | 11..589 | 99 | <- | Minus |
BS09811.complete Sequence
1163 bp (1163 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636484
> BS09811.complete
GAAGTTATCAGTCGACATGCTTCTGCAACGCGTGTGGTTGACACATTTAA
ACAACCATCTACGCCAATACGCGAACAAGTCGCGAGCCCACATCAAACCA
GCCATGGCCGTGAGCATGCGGATGGTCCATCAGGAGATCCTGCATTATGT
AAACCCCTTTGCCAGGATCAACGTGAAGTCCGATGTTTTCCTGCGCATCC
AGCCCGCGGATGTGCATCAGTATACCAGCGGGGATGTGTTTATCGCCCAA
CTGGTTGGCGGCCATGTCAAGAACTCGAATGTCTCTCTCGATGTGAAGGT
AACCGATGAGGACAAGGTGGTCAATGTGGTGGTTAAACAACTGGCGGAGC
AGCCCTCAAAGCTTGAATGCCATCTGCAAATACCTGTGCGTTCCGATGTC
TCTGTGGACGCAAAAGGTAGTGTGCGAGTGGAAGGCATACAGAGTGAACT
GCTGCAAGTCAAAGCAAAGGAAGGCATCCTTACCAAAAATATCAAGGCCA
CCCATATAAACTTGTACAGTGAAAATGGCAACATCAATTGCCAGGGCACA
TTGCTGGGCAAGATTACCCAAATAGAGTCACAAAATGGGAACATTGCGAT
GGATAAGTTGCAAGGAGACAGCTTGAATTGTTCCACCAAAGCTGGCAGTA
TTGTAACCGATTGTTGTTATGTGGAAAAGTCAAAGTTTCAGACACAAACT
GGGCGTCTGGAGCTCAAGAATGTCCACAAAAGCAGCGAAGTGCACGTCCA
TCAGTCGTCGGATCTCAATATGACTGGAGTACATGGCAATATTCAAATAA
CTACCAAAGGAGGAAATTTAAATGTCCAACTCTCTGAGCTAGTGGGGAGC
AACAAAATCGACGCCGAGAACTTATTAGAAGAGGCTATCATACACATTTC
CCAAGCCATAGAGCAGAATCTTCACATCGAGGTAACAGCCCCCGAAGTGA
AATTGGAAAACGAACTGGAGCATGTAGCCCATGCTCTCAACGAGAGCAAG
AACAAATTCGTGCTAAGCAATCCAAATACAAATCGACTGGAAGTAAGCAG
CACAGGCGACAAGGGCGTGCGCCTGGGAAAACAGTCATGGAGCGATATGA
TGCGTAATAAGTTGAAGGCTACCGGCACCTTGGACGATTTACCTTAGAAG
CTTTCTAGACCAT
BS09811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8187-RA | 1131 | CG8187-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8187-RA | 1698 | CG8187-RA | 92..1222 | 17..1147 | 5655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15540700..15541272 | 589..17 | 2865 | 100 | Minus |
2R | 25286936 | 2R | 15540030..15540403 | 1147..774 | 1870 | 100 | Minus |
2R | 25286936 | 2R | 15540457..15540641 | 773..589 | 925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:02:43 has no hits.
BS09811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:26 Download gff for
BS09811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-RA | 1..1131 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:24 Download gff for
BS09811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-RA | 64..1194 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:57 Download gff for
BS09811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-RA | 92..1222 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:26 Download gff for
BS09811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-RA | 64..1194 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:34 Download gff for
BS09811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8187-RA | 92..1222 | 17..1147 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:34 Download gff for
BS09811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15540457..15540640 | 590..773 | 100 | <- | Minus |
2R | 15540030..15540403 | 774..1147 | 100 | <- | Minus |
2R | 15540700..15541272 | 17..589 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:57 Download gff for
BS09811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11427535..11427908 | 774..1147 | 100 | <- | Minus |
arm_2R | 11427962..11428145 | 590..773 | 100 | <- | Minus |
arm_2R | 11428205..11428777 | 17..589 | 100 | | Minus |
BS09811.pep Sequence
Translation from 16 to 1146
> BS09811.pep
MLLQRVWLTHLNNHLRQYANKSRAHIKPAMAVSMRMVHQEILHYVNPFAR
INVKSDVFLRIQPADVHQYTSGDVFIAQLVGGHVKNSNVSLDVKVTDEDK
VVNVVVKQLAEQPSKLECHLQIPVRSDVSVDAKGSVRVEGIQSELLQVKA
KEGILTKNIKATHINLYSENGNINCQGTLLGKITQIESQNGNIAMDKLQG
DSLNCSTKAGSIVTDCCYVEKSKFQTQTGRLELKNVHKSSEVHVHQSSDL
NMTGVHGNIQITTKGGNLNVQLSELVGSNKIDAENLLEEAIIHISQAIEQ
NLHIEVTAPEVKLENELEHVAHALNESKNKFVLSNPNTNRLEVSSTGDKG
VRLGKQSWSDMMRNKLKATGTLDDLP*
BS09811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8187-PA | 376 | CG8187-PA | 1..376 | 1..376 | 1915 | 100 | Plus |