Clone BS09811 Report

Search the DGRC for BS09811

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG8187-RA
Protein status:BS09811.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09811.3prime Sequence

908 bp (872 high quality bases) assembled on 2006-04-19

> BS09811.3prime
ATGGTCTAGAAAGCTTCTAAGGTAAATCGTCCAAGGTGCCGGTAGCCTTC
AACTTATTACGCATCATATCGCTCCATGACTGTTTTCCCAGGCGCACGCC
CTTGTCGCCTGTGCTGCTTACTTCCAGTCGATTTGTATTTGGATTGCTTA
GCACGAATTTGTTCTTGCTCTCGTTGAGAGCATGGGCTACATGCTCCAGT
TCGTTTTCCAATTTCACTTCGGGGGCTGTTACCTCGATGTGAAGATTCTG
CTCTATGGCTTGGGAAATGTGTATGATAGCCTCTTCTAATAAGTTCTCGG
CGTCGATTTTGTTGCTCCCCACTAGCTCAGAGAGTTGGACATTTAAATTT
CCTCCTTTGGTAGTTATTTGAATATTGCCATGTACTCCAGTCATATTGAG
ATCCGACGACTGATGGACGTGCACTTCGCTGCTTTTGTGGACATTCTTGA
GCTCCAGACGCCCAGTTTGTGTCTGAAACTTTGACTTTTCCACATAACAA
CAATCGGTTACAATACTGCCAGCTTTGGTGGAACAATTCAAGCTGTCTCC
TTGCAACTTATCCATCGCAATGTTCCCATTTTGTGACTCTATTTGGGTAA
TCTTGCCCAGCAATGTGCCCTGGCAATTGATGTTGCCATTTTCACTGTAC
AAGTTTATATGGGTGGCCTTGATATTTTTGGTAAGGATGCCTTCCTTTGC
TTTGACTTGCAGCAGTTCACTCTGTATGCCTTCCACTCGCACACTACCTT
TTGCGTCCACAGAGACATCGGAACGCACAGGTATTTGCAGATGGCATTCA
AGCTTTGAGGGCTGCTCCGCCAGTTGTTTAACCACCACATTGACCACCTT
GTCCTCATCGGTTACCTTCACATCGAGAGAGACATTCGAGTTCTTGACAT
GGCCGCCC

BS09811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-PA 1131 CG8187-RA 241..1131 907..17 4455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-RA 1698 CG8187-RA 332..1222 907..17 4455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15540030..15540403 17..390 1870 100 Plus
2R 25286936 2R 15540700..15541032 575..907 1665 100 Plus
2R 25286936 2R 15540457..15540641 391..575 925 100 Plus
Blast to na_te.dros performed on 2015-02-06 16:32:32 has no hits.

BS09811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:30 Download gff for BS09811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8187-PA 240..1131 17..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:10 Download gff for BS09811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8187-PA 240..1131 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:03 Download gff for BS09811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 331..1222 17..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:16:40 Download gff for BS09811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 331..1222 17..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:16:40 Download gff for BS09811.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15540030..15540403 17..390 100 <- Plus
2R 15540457..15540640 391..574 100 <- Plus
2R 15540700..15541032 575..908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:03 Download gff for BS09811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11427535..11427908 17..390 100 <- Plus
arm_2R 11427962..11428145 391..574 100 <- Plus
arm_2R 11428205..11428537 575..908 99   Plus

BS09811.5prime Sequence

899 bp (810 high quality bases) assembled on 2006-04-19

> BS09811.5prime
GAAGTTATCAGTCGACATGCTTCTGCAACGCGTGTGGTTGACACATTTAA
ACAACCATCTACGCCAATACGCGAACAAGTCGCGAGCCCACATCAAACCA
GCCATGGCCGTGAGCATGCGGATGGTCCATCAGGAGATCCTGCATTATGT
AAACCCCTTTGCCAGGATCAACGTGAAGTCCGATGTTTTCCTGCGCATCC
AGCCCGCGGATGTGCATCAGTATACCAGCGGGGATGTGTTTATCGCCCAA
CTGGTTGGCGGCCATGTCAAGAACTCGAATGTCTCTCTCGATGTGAAGGT
AACCGATGAGGACAAGGTGGTCAATGTGGTGGTTAAACAACTGGCGGAGC
AGCCCTCAAAGCTTGAATGCCATCTGCAAATACCTGTGCGTTCCGATGTC
TCTGTGGACGCAAAAGGTAGTGTGCGAGTGGAAGGCATACAGAGTGAACT
GCTGCAAGTCAAAGCAAAGGAAGGCATCCTTACCAAAAATATCAAGGCCA
CCCATATAAACTTGTACAGTGAAAATGGCAACATCAATTGCCAGGGCACA
TTGCTGGGCAAGATTACCCAAATAGAGTCACAAAATGGGAACATTGCGAT
GGATAAGTTGCAAGGAGACAGCTTGAATTGTTCCACCAAAGCTGGCAGTA
TTGTAACCGATTGTTGTTATGTGGAAAAGTCAAAGTTTCAGACACAAACT
GGGCGTCTGGAGCTCAAGAATGTCCACAAAAGCAGCGAAGTGCACGTCCA
TCAGTCGTCGGATCTCAATATGACTGGAGTACATGGCAATATTCAAATAA
CTACCAAAGGAGGAAATTTAAATGTCCAACTCTCTGAGCTAGTGGGGAGC
AACAAAATCGACGCCGAGAACTTATTAGAAGAGGCTATCATACACATTT

BS09811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-PA 1131 CG8187-RA 1..883 17..899 4415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-RA 1698 CG8187-RA 92..974 17..899 4415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15540700..15541272 589..17 2865 100 Minus
2R 25286936 2R 15540457..15540641 773..589 925 100 Minus
2R 25286936 2R 15540278..15540403 899..774 630 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:05:56 has no hits.

BS09811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:31 Download gff for BS09811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8187-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:12 Download gff for BS09811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8187-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:39 Download gff for BS09811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 92..974 17..899 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:02 Download gff for BS09811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 92..974 17..899 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:02 Download gff for BS09811.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15540278..15540403 774..899 100 <- Minus
2R 15540457..15540640 590..773 100 <- Minus
2R 15540700..15541277 11..589 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:39 Download gff for BS09811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11427783..11427908 774..899 100 <- Minus
arm_2R 11427962..11428145 590..773 100 <- Minus
arm_2R 11428205..11428782 11..589 99 <- Minus

BS09811.complete Sequence

1163 bp (1163 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636484

> BS09811.complete
GAAGTTATCAGTCGACATGCTTCTGCAACGCGTGTGGTTGACACATTTAA
ACAACCATCTACGCCAATACGCGAACAAGTCGCGAGCCCACATCAAACCA
GCCATGGCCGTGAGCATGCGGATGGTCCATCAGGAGATCCTGCATTATGT
AAACCCCTTTGCCAGGATCAACGTGAAGTCCGATGTTTTCCTGCGCATCC
AGCCCGCGGATGTGCATCAGTATACCAGCGGGGATGTGTTTATCGCCCAA
CTGGTTGGCGGCCATGTCAAGAACTCGAATGTCTCTCTCGATGTGAAGGT
AACCGATGAGGACAAGGTGGTCAATGTGGTGGTTAAACAACTGGCGGAGC
AGCCCTCAAAGCTTGAATGCCATCTGCAAATACCTGTGCGTTCCGATGTC
TCTGTGGACGCAAAAGGTAGTGTGCGAGTGGAAGGCATACAGAGTGAACT
GCTGCAAGTCAAAGCAAAGGAAGGCATCCTTACCAAAAATATCAAGGCCA
CCCATATAAACTTGTACAGTGAAAATGGCAACATCAATTGCCAGGGCACA
TTGCTGGGCAAGATTACCCAAATAGAGTCACAAAATGGGAACATTGCGAT
GGATAAGTTGCAAGGAGACAGCTTGAATTGTTCCACCAAAGCTGGCAGTA
TTGTAACCGATTGTTGTTATGTGGAAAAGTCAAAGTTTCAGACACAAACT
GGGCGTCTGGAGCTCAAGAATGTCCACAAAAGCAGCGAAGTGCACGTCCA
TCAGTCGTCGGATCTCAATATGACTGGAGTACATGGCAATATTCAAATAA
CTACCAAAGGAGGAAATTTAAATGTCCAACTCTCTGAGCTAGTGGGGAGC
AACAAAATCGACGCCGAGAACTTATTAGAAGAGGCTATCATACACATTTC
CCAAGCCATAGAGCAGAATCTTCACATCGAGGTAACAGCCCCCGAAGTGA
AATTGGAAAACGAACTGGAGCATGTAGCCCATGCTCTCAACGAGAGCAAG
AACAAATTCGTGCTAAGCAATCCAAATACAAATCGACTGGAAGTAAGCAG
CACAGGCGACAAGGGCGTGCGCCTGGGAAAACAGTCATGGAGCGATATGA
TGCGTAATAAGTTGAAGGCTACCGGCACCTTGGACGATTTACCTTAGAAG
CTTTCTAGACCAT

BS09811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-RA 1131 CG8187-PA 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-RA 1698 CG8187-RA 92..1222 17..1147 5655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15540700..15541272 589..17 2865 100 Minus
2R 25286936 2R 15540030..15540403 1147..774 1870 100 Minus
2R 25286936 2R 15540457..15540641 773..589 925 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:02:43 has no hits.

BS09811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:26 Download gff for BS09811.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 1..1131 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:24 Download gff for BS09811.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 64..1194 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:57 Download gff for BS09811.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 92..1222 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:26 Download gff for BS09811.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 64..1194 17..1147 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:34 Download gff for BS09811.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 92..1222 17..1147 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:34 Download gff for BS09811.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15540457..15540640 590..773 100 <- Minus
2R 15540030..15540403 774..1147 100 <- Minus
2R 15540700..15541272 17..589 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:57 Download gff for BS09811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11427535..11427908 774..1147 100 <- Minus
arm_2R 11427962..11428145 590..773 100 <- Minus
arm_2R 11428205..11428777 17..589 100   Minus

BS09811.pep Sequence

Translation from 16 to 1146

> BS09811.pep
MLLQRVWLTHLNNHLRQYANKSRAHIKPAMAVSMRMVHQEILHYVNPFAR
INVKSDVFLRIQPADVHQYTSGDVFIAQLVGGHVKNSNVSLDVKVTDEDK
VVNVVVKQLAEQPSKLECHLQIPVRSDVSVDAKGSVRVEGIQSELLQVKA
KEGILTKNIKATHINLYSENGNINCQGTLLGKITQIESQNGNIAMDKLQG
DSLNCSTKAGSIVTDCCYVEKSKFQTQTGRLELKNVHKSSEVHVHQSSDL
NMTGVHGNIQITTKGGNLNVQLSELVGSNKIDAENLLEEAIIHISQAIEQ
NLHIEVTAPEVKLENELEHVAHALNESKNKFVLSNPNTNRLEVSSTGDKG
VRLGKQSWSDMMRNKLKATGTLDDLP*

BS09811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-PA 376 CG8187-PA 1..376 1..376 1915 100 Plus