Clone BS09813 Report

Search the DGRC for BS09813

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptcdm-RA
Protein status:BS09813.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09813.3prime Sequence

937 bp (874 high quality bases) assembled on 2006-04-19

> BS09813.3prime
ATGGTCTAGAAAGCTTTCACTGGAACTTTTCTGTAAGTCCTCGGGTCTTC
ATTGCCATTTCCGACAAATGTTGTTGCAATAACCTCTTGTTGACCTTTTC
CTTGATTATTAGAGCAGTGTAGCGCGTTTTATCCGCGTCGGTTATGAGCT
GTGTGGGGAAATTGGGAGTGGACATTAGGGACTTCATCCAGACGGCCATC
TCGGCGGCATATTTTCTGTTCATGGCAAGAAGGATGTCTGCAAACTTATC
CACCTGCGACCGCGGCGTTAGGTAGCCCACGCACATCATCGCCGTGTACA
GCGTCTGCTCGCCGGTGGCCAGGACAACTTCTGTGACATGAGCATGGTTA
CGCGACTGCATCACAAAGTGGGTAAGAAACTGTATGCTATTTCGGATGGC
ACCACTCTCCGGCAAAGTCATTCCACGCTGGGCGTAAAAGACCAGACGAT
CGTAGGCCAGTGTCTTGTCCTCCAAAACTTGAGGGATTTTCTTAATGATC
TGCGTCAGACAGCCGAAGAAGGTTTCCATGGTGTCCGAAATGTTGGAGAA
GTTCTGCTCGGGAGTGCTCTCAAATAGCTTAAAGCTGTGTTGGATGAACT
CCCTCAGAAGTTGCTGCATCAGCGGCTTGCAGCCTTCGTCCTTAAAGAAC
ATAACAATGGCCGTTTTGGATATTTCTAGAGTAGGAGCGCAGCATCGGGT
CTGAAAGCTGGCAACAATGAAGAGACAAAGATCCTGCAGCATTGGCTGGA
AGCTGCTCCTTAAATTCGTTATCGCATGCTTCATCGCACTGCAAGCGGCC
TCTAGGACATCGATCTCCTCCACCCACATCTCGGCGATTCTCTTGAAGAT
GGGCATCGTGCGCTGCATGACGAGCAGAACTGGCTGCACAATCGGTTGGT
CCGTCGCCTGCTCGTCCACATCCGTGTTTAGCGAGGA

BS09813.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7212-PA 2916 cdm-RA 1996..2916 937..17 4605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-RB 3691 CG7212-RB 2129..3051 937..15 4615 100 Minus
cdm-RA 3253 CG7212-RA 2129..3051 937..15 4615 100 Minus
PP2A-B'-RK 3572 CG7913-RK 3438..3524 15..101 435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18180065..18180626 101..662 2810 100 Plus
3R 32079331 3R 18180684..18180824 661..801 705 100 Plus
3R 32079331 3R 18180882..18181020 799..937 695 100 Plus
3R 32079331 3R 18179915..18180001 15..101 435 100 Plus
Blast to na_te.dros performed on 2015-02-06 16:29:28 has no hits.

BS09813.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:34 Download gff for BS09813.3prime
Subject Subject Range Query Range Percent Splice Strand
cdm-PA 1997..2916 17..936 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:16 Download gff for BS09813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7212-PA 1997..2916 17..936 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:24:35 Download gff for BS09813.3prime
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 2130..3051 15..936 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:15:39 Download gff for BS09813.3prime
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 2130..3051 15..936 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:15:39 Download gff for BS09813.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18180883..18181019 800..936 100   Plus
3R 18179915..18180001 15..101 100 <- Plus
3R 18180066..18180625 102..661 100 <- Plus
3R 18180685..18180822 662..799 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:24:35 Download gff for BS09813.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14005637..14005723 15..101 100 <- Plus
arm_3R 14005788..14006347 102..661 100 <- Plus
arm_3R 14006407..14006544 662..799 100 <- Plus
arm_3R 14006605..14006741 800..936 100   Plus

BS09813.5prime Sequence

911 bp (846 high quality bases) assembled on 2006-04-19

> BS09813.5prime
GAAGTTATCAGTCGACATGGAGCCCATTGACATTGCGCGTCTGGAGGAGG
CGGTCGTGTCGTTCTACCGCTCGAACTCGCAGAACCAGGCGATCACCCAT
GAATGGCTTACCGATGCGGAGGCCAGTCCACAGGCCTGGCAGTTTTCCTG
GCAGCTAATGCAGCTCGGCAAGAGTCAGGAGGTGCAGTTCTTCGGCGCCA
TCACGCTGCACTCCAAGCTTATGAAGCACTGGCACGAAGTGCCGCCAGAG
AATCGCGAGGAGTTAAAGCAAAAGATACTCGAATCCATCGTTCGCTTCGC
TGGCGGACCGAAGATCGTCCTCAATCGGTTGTGCATCTCGCTGGGCGCTT
ACATCGTTCACATGCTGGGCGAATGGCCCGGCGCCATCGAGGAGGTGATC
AACACGTTTCAGAATCAACGGATGCCAAATGTCAGCGCCGATGTGCAATT
GTGGATCATGCTGGAGGTGCTGACCGCCATTCCCGAGGAAGCGCAGGTCA
TACATACGTCTGTCAAGCGGGTTGTTCTGCGCGCCGAGATCGCCAAGCGA
GTGCAGTTGGTCATTCACACCGTTGAGCGATATCTGAAGCTGCAAATGAA
CCGCGTGTGGGATGCCGAGGCGTACAGTAACATGAACAGGGCCGTTAAGT
GCGTCGGCACCTGGATCAAAAACATCGGCTACACCATTGAGGGCTGCGTC
ACCATCACCGCCGTGCTCCTGGAAGTGGTGCACAAGTGCTATTGGCCCTG
CATACACGCCGGCGACGGCTGCATGACCGCCGATGAGAACGAACTGGCCG
AGTCCTGTCTGAAGACCATGGTGAACATTATCATCCAGCCAGACTGCCAC
AACTATCCAAAGACGGCATTTGTGCTTATAAAAATGTTCCTGGACTCGCT
ATCCGAATCAC

BS09813.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7212-PA 2916 cdm-RA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-RB 3691 CG7212-RB 132..1024 15..907 4465 100 Plus
cdm-RA 3253 CG7212-RA 132..1024 15..907 4465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18182596..18183094 669..171 2495 100 Minus
3R 32079331 3R 18182296..18182533 907..670 1190 100 Minus
3R 32079331 3R 18183191..18183348 172..15 790 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:37:53 has no hits.

BS09813.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:35 Download gff for BS09813.5prime
Subject Subject Range Query Range Percent Splice Strand
cdm-PA 1..896 17..911 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:18 Download gff for BS09813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7212-PA 1..896 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:52:27 Download gff for BS09813.5prime
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 126..1029 9..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:24:47 Download gff for BS09813.5prime
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 126..1029 9..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:24:47 Download gff for BS09813.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18182291..18182533 670..911 99 <- Minus
3R 18182596..18183092 173..669 100 <- Minus
3R 18183191..18183354 9..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:52:27 Download gff for BS09813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14008013..14008255 670..911 99 <- Minus
arm_3R 14008318..14008814 173..669 100 <- Minus
arm_3R 14008913..14009076 9..172 98   Minus

BS09813.complete Sequence

2948 bp assembled on 2008-01-16

GenBank Submission: FJ636485

> BS09813.complete
GAAGTTATCAGTCGACATGGAGCCCATTGACATTGCGCGTCTGGAGGAGG
CGGTCGTGTCGTTCTACCGCTCGAACTCGCAGAACCAGGCGATCACCCAT
GAATGGCTTACCGATGCGGAGGCCAGTCCACAGGCCTGGCAGTTTTCCTG
GCAGCTAATGCAGCTCGGCAAGAGTCAGGAGGTGCAGTTCTTCGGCGCCA
TCACGCTGCACTCCAAGCTTATGAAGCACTGGCACGAAGTGCCGCCAGAG
AATCGCGAGGAGTTAAAGCAAAAGATACTCGAATCCATCGTTCGCTTCGC
TGGCGGACCGAAGATCGTCCTCAATCGGTTGTGCATCTCGCTGGGCGCTT
ACATCGTTCACATGCTGGGCGAATGGCCCGGCGCCATCGAGGAGGTGATC
AACACGTTTCAGAATCAACGGATGCCAAATGTCAGCGCCGATGTGCAATT
GTGGATCATGCTGGAGGTGCTGACCGCCATTCCCGAGGAAGCGCAGGTCA
TACATACGTCTGTCAAGCGGGTTGTTCTGCGCGCCGAGATCGCCAAGCGA
GTGCAGTTGGTCATTCACACCGTTGAGCGATATCTGAAGCTGCAAATGAA
CCGCGTGTGGGATGCCGAGGCGTACAGTAACATGAACAGGGCCGTTAAGT
GCGTCGGCACCTGGATCAAAAACATCGGCTACACCATTGAGGGCTGCGTC
ACCATCACCGCCGTGCTCCTGGAAGTGGTGCACAAGTGCTATTGGCCCTG
CATACACGCCGGCGACGGCTGCATGACCGCCGATGAGAACGAACTGGCCG
AGTCCTGTCTGAAGACCATGGTGAACATTATCATCCAGCCAGACTGCCAC
AACTATCCAAAGACGGCATTTGTGCTTATAAAAATGTTCCTGGACTCGCT
ATCCGAAATCACAAAGACGGAATGGAAGAGGGAGAACGACAACGAGGACA
TTATCGTACATATCTACATGCTGTTCGTCTCTTCGGTGGAGCGACATTCG
ACGCTGTTGCTCAGCGGCATCACGTCCGCGGATCCGGAATTGTCTATCCT
AGTGCATCGCATCGTGCAGGAGATTCTCCACTGCACGGACAAGCCGGGCA
TTTACCCGGTGGAGGAGTCCTGCAGCACAATGGCCTTGGCGTTTTGGTAT
ATGCTGCAAGACGAAGTGTTCGCCATGTCTAACGATGAGCAGAAACACAA
GTGCTGGGAGTACATCAAACCATTGTACGCCCATCTAACCAGGATTTTAG
TAAGAAAGTCAGAGCAGCCAGACGAAAAGTCGCTCGCCAAGTGGAGCTCC
GATGATTTGGAATGCTTTAGGTGCTACAGACAGGATATATCCGATACCTT
TATGTATTGCTATGATGTGTTGAATGACTATATCTTGGAGATTCTGGCTG
CCATGTTGGACGAGGCCATTGCCGATCTGCAAAGACATCCCACACACTGG
ACAAAGCTGGAGGCGTGCATCTATTCCTTTCAGTCGGTGGCCGAGCACTT
TGGTGGCGAGGAGAAGCGGCAAATACCACGGCTGATGCGCGTGCTGGCCG
AGATTCCCTACGAGAAGCTCAATGTCAAGCTACTGGGCACTGCGCTAGAG
ACAATGGGCTCCTATTGCAATTGGCTGATGGAGAATCCGGCGTACATTCC
GCCAGCCATTAACCTACTGGTGCGCGGCCTCAACTCCTCAATGTCAGCAC
AGGCGACGCTCGGCCTGAAGGAGCTGTGTCGCGATTGTCAGCTGCAGCTG
AAGCCGTATGCGGATCCGCTCCTAAACGCATGCCACGCTTCCCTAAACAC
GGGCCGCATGAAGAACTCCGATTCGGTGAGGCTTATGTTCAGCATCGGTA
AGCTAATGAGCCTGCTGCGGCCAGAGGAAATACCCAAATACTTGGATATT
ATCGTCAGTCCCTGCTTCGAGGAGCTACAGGCCATTTGCCAGGCAGATTC
GAAAACTCCCGCTGCTCGAATTCGCACAATCTTCCGGCTCAATATGATCT
CCACTCTCTTCTCCTCGCTAAACACGGATGTGGACGAGCAGGCGACGGAC
CAACCGATTGTGCAGCCAGTTCTGCTCGTCATGCAGCGCACGATGCCCAT
CTTCAAGAGAATCGCCGAGATGTGGGTGGAGGAGATCGATGTCCTAGAGG
CCGCTTGCAGTGCGATGAAGCATGCGATAACGAATTTAAGGAGCAGCTTC
CAGCCAATGCTGCAGGATCTTTGTCTCTTCATTGTTGCCAGCTTTCAGAC
CCGATGCTGCGCTCCTACTCTAGAAATATCCAAAACGGCCATTGTTATGT
TCTTTAAGGACGAAGGCTGCAAGCCGCTGATGCAGCAACTTCTGAGGGAG
TTCATCCAACACAGCTTTAAGCTATTTGAGAGCACTCCCGAGCAGAACTT
CTCCAACATTTCGGACACCATGGAAACCTTCTTCGGCTGTCTGACGCAGA
TCATTAAGAAAATCCCTCAAGTTTTGGAGGACAAGACACTGGCCTACGAT
CGTCTGGTCTTTTACGCCCAGCGTGGAATGACTTTGCCGGAGAGTGGTGC
CATCCGAAATAGCATACAGTTTCTTACCCACTTTGTGATGCAGTCGCGTA
ACCATGCTCATGTCACAGAAGTTGTCCTGGCCACCGGCGAGCAGACGCTG
TACACGGCGATGATGTGCGTGGGCTACCTAACGCCGCGGTCGCAGGTGGA
TAAGTTTGCAGACATCCTTCTTGCCATGAACAGAAAATATGCCGCCGAGA
TGGCCGTCTGGATGAAGTCCCTAATGTCCACTCCCAATTTCCCCACACAG
CTCATAACCGACGCGGATAAAACGCGCTACACTGCTCTAATAATCAAGGA
AAAGGTCAACAAGAGGTTATTGCAACAACATTTGTCGGAAATGGCAATGA
AGACCCGAGGACTTACAGAAAAGTTCCAGTGAAAGCTTTCTAGACCAT

BS09813.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-RB 2916 CG7212-PB 1..2916 17..2932 14580 100 Plus
cdm-RA 2916 CG7212-PA 1..2916 17..2932 14580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-RB 3691 CG7212-RB 132..3051 15..2934 14600 100 Plus
cdm-RA 3253 CG7212-RA 132..3051 15..2934 14600 100 Plus
PP2A-B'-RK 3572 CG7913-RK 3438..3524 2934..2848 435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18181852..18182533 1351..670 3410 100 Minus
3R 32079331 3R 18181147..18181746 1951..1352 3000 100 Minus
3R 32079331 3R 18180065..18180626 2848..2287 2810 100 Minus
3R 32079331 3R 18182596..18183094 669..171 2495 100 Minus
3R 32079331 3R 18180882..18181081 2150..1951 1000 100 Minus
3R 32079331 3R 18183191..18183348 172..15 790 100 Minus
3R 32079331 3R 18180684..18180824 2288..2148 705 100 Minus
3R 32079331 3R 18179915..18180001 2934..2848 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:00:21 has no hits.

BS09813.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:34 Download gff for BS09813.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 1..2916 17..2932 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:35 Download gff for BS09813.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 134..3048 17..2931 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:25 Download gff for BS09813.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 134..3048 17..2931 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:34 Download gff for BS09813.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 126..3051 9..2934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:12 Download gff for BS09813.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 134..3048 17..2931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:12 Download gff for BS09813.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18179918..18180001 2848..2931 100 <- Minus
3R 18180066..18180625 2288..2847 100 <- Minus
3R 18180685..18180822 2150..2287 100 <- Minus
3R 18180883..18181080 1952..2149 100 <- Minus
3R 18181147..18181746 1352..1951 100 <- Minus
3R 18181852..18182533 670..1351 100 <- Minus
3R 18182596..18183092 173..669 100 <- Minus
3R 18183191..18183346 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:25 Download gff for BS09813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14005640..14005723 2848..2931 100 <- Minus
arm_3R 14005788..14006347 2288..2847 100 <- Minus
arm_3R 14006407..14006544 2150..2287 100 <- Minus
arm_3R 14006605..14006802 1952..2149 100 <- Minus
arm_3R 14006869..14007468 1352..1951 100 <- Minus
arm_3R 14007574..14008255 670..1351 100 <- Minus
arm_3R 14008318..14008814 173..669 100 <- Minus
arm_3R 14008913..14009068 17..172 100   Minus

BS09813.pep Sequence

Translation from 16 to 2931

> BS09813.pep
MEPIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL
GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKI
VLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLE
VLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDA
EAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHAGD
GCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITK
TEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIV
QEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI
KPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYD
VLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK
RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINL
LVRGLNSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKN
SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAA
RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIA
EMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAP
TLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISD
TMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSI
QFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADI
LLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEKVNKR
LLQQHLSEMAMKTRGLTEKFQ*

BS09813.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-PB 971 CG7212-PB 1..971 1..971 5059 100 Plus
cdm-PA 971 CG7212-PA 1..971 1..971 5059 100 Plus
Trn-SR-PB 932 CG2848-PB 17..825 16..868 361 19.5 Plus
Trn-SR-PA 932 CG2848-PA 17..825 16..868 361 19.5 Plus