Clone Sequence Records
BS09815.3prime Sequence
996 bp (855 high quality bases) assembled on 2006-04-19
> BS09815.3prime
ATGGTCTAGAAAGCTTCTAGCGGGCCCTGAAGAGTACCGAGTGAAGTGCA
TCGATGTCCACCTCCACGCCAGACGAGTTTGTGGTCACGGTGCGAGAGCT
GGCCTTGTGCACCGAGCGACGGGAGGAGTGCGGATTGACCAGCACACAGT
GCATGGGCTGGTCATCGAACTGACGATGGTGATAGGTATCTACGGCCTTC
TCGGCATGTTCCAGTGACTTGTAAATAACTTCGGCGGTGCCGGGACGCAC
CACACGAGCGTCGTACACTGGGCCGATGTCGCTAAAAAGCTCGCGAATAT
CCGCAGTAGTCACGTTAGTATGCAGATTGCTCACCAGCAGGCGGTATCCA
TCCTTTGTGTTCGACGTACGCAGCGACAATGGGGATGGCGAACGGCGCTT
GTTCTTCGATGGAGCAGCTGCATCACCATCACTATCAGTACCGCTATCGC
TATCACTACCACCACCGCCACCAACAGCCTTTCTCCGGTTCTCGTTGGCG
TAGATGCCATGAGAAATGTGAGGATCTCTCTTACCGACAAACAGACGAGA
CCGCAGCGATTCTGGGAGTTTACTTGTGCTTACTGTGTCGCGGTGGCGGC
GCTCGAGAGGCTCCTTGGTGCTATTTGAGCGTCCAACTACGAGTCGGTTG
GTCAGCGAAGGACGCTCAATGCGATTGCGGGCCGCCTCGTAAATGGAGAA
TGCATTGTTATCTATTTTGTTATTTAGTGGGGCCATGGACATCTCCACGT
CGTCGCCGCGGTTCAGGTCGAGCCCACCAATTGAGTAGCGTGGCGACGCT
TGCTTCATTTGCCCTAAGTGCAGTGTGCGAGATATTTCCTCATCCTCGAG
GTCCTGCATAATTATCAGAATCATATAGCGTCGTGGAAGCAAGGGTTTGC
CCGGCTTATGGGATCTGGGGTCAAAGGTTCGACGCAAGCCCGACAACATG
TGGTTACCCAGTTCAACGACCCCGTCGTCCGAGTCCAATTTCGCCT
BS09815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-PA | 1425 | CG6961-RA | 582..1425 | 860..17 | 4220 | 100 | Minus |
CG18259-PA | 1425 | CG18259-RA | 582..1425 | 860..17 | 4020 | 99 | Minus |
CG6961-PA | 1425 | CG6961-RA | 446..551 | 996..891 | 480 | 98.1 | Minus |
CG18259-PA | 1425 | CG18259-RA | 446..551 | 996..891 | 480 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-RA | 1894 | CG6961-RA | 596..1575 | 996..17 | 4750 | 99.2 | Minus |
CG18259-RA | 2055 | CG18259-RA | 565..1544 | 996..17 | 4630 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18786599..18787341 | 99..841 | 3715 | 100 | Plus |
X | 23542271 | X | 18781914..18782656 | 99..841 | 3610 | 99.1 | Plus |
X | 23542271 | X | 18782713..18782868 | 841..996 | 585 | 91.7 | Plus |
X | 23542271 | X | 18787398..18787553 | 841..996 | 585 | 91.7 | Plus |
X | 23542271 | X | 18786461..18786544 | 17..100 | 420 | 100 | Plus |
X | 23542271 | X | 18781776..18781859 | 17..100 | 405 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-06 16:35:51 has no hits.
BS09815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:36 Download gff for
BS09815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-PA | 446..1425 | 17..996 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:20 Download gff for
BS09815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-PA | 446..1425 | 17..996 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:35 Download gff for
BS09815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 596..1579 | 14..996 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:17:49 Download gff for
BS09815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 596..1579 | 14..996 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:17:49 Download gff for
BS09815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18786457..18786542 | 14..98 | 98 | <- | Plus |
X | 18786599..18787340 | 99..840 | 100 | <- | Plus |
X | 18787398..18787553 | 841..996 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:35 Download gff for
BS09815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18680490..18680575 | 14..98 | 98 | <- | Plus |
arm_X | 18680632..18681373 | 99..840 | 100 | <- | Plus |
arm_X | 18681431..18681586 | 841..996 | 94 | | Plus |
BS09815.5prime Sequence
940 bp (880 high quality bases) assembled on 2006-04-19
> BS09815.5prime
GAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAG
AGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAAT
GCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCC
ATCGGGTGCACGAGGATCTCACTCTGATATGCCGGCAAAGCGCACCTTCG
ATGCCAGAAACACGATTGCCGCGAAGACACGGGCCAAGATAGCCGATGCT
CGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCA
ACTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTG
ATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGA
GTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGA
CGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGG
GTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCAT
AAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATAT
GCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAA
TGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGC
GGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAA
CAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTT
CGCTGACCAACCGACTCGTAGTTGGACGCTCAAATAGCACCAAGGAGCCT
CTCGAGCGCCGCCACCGCGACACAGTAAGCACAAGTAAACTCCCAGAATC
GCTGCGGTCTCGTCTGGTTGTCGGGTAGAGAGATCCTCAC
BS09815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-PA | 1425 | CG6961-RA | 1..924 | 17..940 | 4545 | 99.6 | Plus |
CG18259-PA | 1425 | CG18259-RA | 1..924 | 17..940 | 4345 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-RA | 1894 | CG6961-RA | 150..1074 | 16..940 | 4580 | 99.7 | Plus |
CG18259-RA | 2055 | CG18259-RA | 119..1043 | 16..940 | 4460 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18787398..18787918 | 617..97 | 2605 | 100 | Minus |
X | 23542271 | X | 18782713..18783233 | 617..97 | 2530 | 99 | Minus |
X | 23542271 | X | 18787018..18787341 | 940..617 | 1575 | 99.1 | Minus |
X | 23542271 | X | 18782333..18782656 | 940..617 | 1530 | 98.1 | Minus |
X | 23542271 | X | 18787981..18788061 | 96..16 | 405 | 100 | Minus |
X | 23542271 | X | 18783296..18783376 | 96..16 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:57:08 has no hits.
BS09815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:37 Download gff for
BS09815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:21 Download gff for
BS09815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:42:02 Download gff for
BS09815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 147..1074 | 10..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:20:34 Download gff for
BS09815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 147..1074 | 10..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:20:34 Download gff for
BS09815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18787018..18787340 | 618..940 | 99 | <- | Minus |
X | 18787398..18787918 | 97..617 | 100 | <- | Minus |
X | 18787981..18788064 | 10..96 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:42:02 Download gff for
BS09815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18681051..18681373 | 618..940 | 99 | <- | Minus |
arm_X | 18681431..18681951 | 97..617 | 100 | <- | Minus |
arm_X | 18682014..18682097 | 10..96 | 96 | | Minus |
BS09815.complete Sequence
1457 bp (1457 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636486
> BS09815.complete
GAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAG
AGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAAT
GCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCC
ATCGGGTGCACGAGGATCTCACTCTGATATGCCGGCAAAGCGCACCTTCG
ATGCCAGAAACACGATTGCCGCGAAGACACGGGCCAAGATAGCCGATGCT
CGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCA
ACTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTG
ATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGA
GTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGA
CGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGG
GTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCAT
AAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATAT
GCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAA
TGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGC
GGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAA
CAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTT
CGCTGACCAACCGACTCGTAGTTGGACGCTCAAATAGCACCAAGGAGCCT
CTCGAGCGCCGCCACCGCGACACAGTAAGCACAAGTAAACTCCCAGAATC
GCTGCGGTCTCGTCTGTTTGTCGGTAAGAGAGATCCTCACATTTCTCATG
GCATCTACGCCAACGAGAACCGGAGAAAGGCTGTTGGTGGCGGTGGTGGT
AGTGATAGCGATAGCGGTACTGATAGTGATGGTGATGCAGCTGCTCCATC
GAAGAACAAGCGCCGTTCGCCATCCCCATTGTCGCTGCGTACGTCGAACA
CAAAGGATGGATACCGCCTGCTGGTGAGCAATCTGCATACTAACGTGACT
ACTGCGGATATTCGCGAGCTTTTTAGCGACATCGGCCCAGTGTACGACGC
TCGTGTGGTGCGTCCCGGCACCGCCGAAGTTATTTACAAGTCACTGGAAC
ATGCCGAGAAGGCCGTAGATACCTATCACCATCGTCAGTTCGATGACCAG
CCCATGCACTGTGTGCTGGTCAATCCGCACTCCTCCCGTCGCTCGGTGCA
CAAGGCCAGCTCTCGCACCGTGACCACAAACTCGTCTGGCGTGGAGGTGG
ACATCGATGCACTTCACTCGGTACTCTTCAGGGCCCGCTAGAAGCTTTCT
AGACCAT
BS09815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-RA | 1425 | CG6961-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
CG18259-RA | 1425 | CG18259-PA | 1..1425 | 17..1441 | 6930 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-RA | 1894 | CG6961-RA | 150..1575 | 16..1441 | 7130 | 100 | Plus |
CG18259-RA | 2055 | CG18259-RA | 119..1544 | 16..1441 | 6935 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18786599..18787341 | 1359..617 | 3715 | 100 | Minus |
X | 23542271 | X | 18781914..18782656 | 1359..617 | 3610 | 99.1 | Minus |
X | 23542271 | X | 18787398..18787918 | 617..97 | 2605 | 100 | Minus |
X | 23542271 | X | 18782713..18783233 | 617..97 | 2530 | 99 | Minus |
X | 23542271 | X | 18786461..18786544 | 1441..1358 | 420 | 100 | Minus |
X | 23542271 | X | 18781776..18781859 | 1441..1358 | 405 | 98.8 | Minus |
X | 23542271 | X | 18783296..18783376 | 96..16 | 405 | 100 | Minus |
X | 23542271 | X | 18787981..18788061 | 96..16 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:22:47 has no hits.
BS09815.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:12 Download gff for
BS09815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 1..1425 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:06 Download gff for
BS09815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 142..1574 | 10..1444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:17 Download gff for
BS09815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 151..1575 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:12 Download gff for
BS09815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 142..1574 | 10..1444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:18 Download gff for
BS09815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 151..1575 | 17..1441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:18 Download gff for
BS09815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18786461..18786542 | 1360..1441 | 100 | <- | Minus |
X | 18786599..18787340 | 618..1359 | 100 | <- | Minus |
X | 18787398..18787918 | 97..617 | 100 | <- | Minus |
X | 18787981..18788060 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:17 Download gff for
BS09815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18680494..18680575 | 1360..1441 | 100 | <- | Minus |
arm_X | 18680632..18681373 | 618..1359 | 100 | <- | Minus |
arm_X | 18681431..18681951 | 97..617 | 100 | <- | Minus |
arm_X | 18682014..18682093 | 17..96 | 100 | | Minus |
BS09815.pep Sequence
Translation from 16 to 1440
> BS09815.pep
MDIDLSLDEIIERKRGQRGYRPLDRKFNANFSKPRQLLNKPFFKPSGARG
SHSDMPAKRTFDARNTIAAKTRAKIADARDLINKSVRDSGIDARQLLLER
KKARSAGPILIDDEEESFEPSHRARGKGVHIGQFGHRLSMSNHADGTIQA
KWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLED
EEISRTLHLGQMKQASPRYSIGGLDLNRGDDVEMSMAPLNNKIDNNAFSI
YEAARNRIERPSLTNRLVVGRSNSTKEPLERRHRDTVSTSKLPESLRSRL
FVGKRDPHISHGIYANENRRKAVGGGGGSDSDSGTDSDGDAAAPSKNKRR
SPSPLSLRTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPVYDARVVRP
GTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSR
TVTTNSSGVEVDIDALHSVLFRAR*
BS09815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-PA | 474 | CG6961-PA | 1..474 | 1..474 | 2449 | 100 | Plus |
CG18259-PA | 474 | CG18259-PA | 1..474 | 1..474 | 2421 | 98.7 | Plus |