Clone BS09815 Report

Search the DGRC for BS09815

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:98
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG6961-RA
Protein status:BS09815.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09815.3prime Sequence

996 bp (855 high quality bases) assembled on 2006-04-19

> BS09815.3prime
ATGGTCTAGAAAGCTTCTAGCGGGCCCTGAAGAGTACCGAGTGAAGTGCA
TCGATGTCCACCTCCACGCCAGACGAGTTTGTGGTCACGGTGCGAGAGCT
GGCCTTGTGCACCGAGCGACGGGAGGAGTGCGGATTGACCAGCACACAGT
GCATGGGCTGGTCATCGAACTGACGATGGTGATAGGTATCTACGGCCTTC
TCGGCATGTTCCAGTGACTTGTAAATAACTTCGGCGGTGCCGGGACGCAC
CACACGAGCGTCGTACACTGGGCCGATGTCGCTAAAAAGCTCGCGAATAT
CCGCAGTAGTCACGTTAGTATGCAGATTGCTCACCAGCAGGCGGTATCCA
TCCTTTGTGTTCGACGTACGCAGCGACAATGGGGATGGCGAACGGCGCTT
GTTCTTCGATGGAGCAGCTGCATCACCATCACTATCAGTACCGCTATCGC
TATCACTACCACCACCGCCACCAACAGCCTTTCTCCGGTTCTCGTTGGCG
TAGATGCCATGAGAAATGTGAGGATCTCTCTTACCGACAAACAGACGAGA
CCGCAGCGATTCTGGGAGTTTACTTGTGCTTACTGTGTCGCGGTGGCGGC
GCTCGAGAGGCTCCTTGGTGCTATTTGAGCGTCCAACTACGAGTCGGTTG
GTCAGCGAAGGACGCTCAATGCGATTGCGGGCCGCCTCGTAAATGGAGAA
TGCATTGTTATCTATTTTGTTATTTAGTGGGGCCATGGACATCTCCACGT
CGTCGCCGCGGTTCAGGTCGAGCCCACCAATTGAGTAGCGTGGCGACGCT
TGCTTCATTTGCCCTAAGTGCAGTGTGCGAGATATTTCCTCATCCTCGAG
GTCCTGCATAATTATCAGAATCATATAGCGTCGTGGAAGCAAGGGTTTGC
CCGGCTTATGGGATCTGGGGTCAAAGGTTCGACGCAAGCCCGACAACATG
TGGTTACCCAGTTCAACGACCCCGTCGTCCGAGTCCAATTTCGCCT

BS09815.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-PA 1425 CG6961-RA 582..1425 860..17 4220 100 Minus
CG18259-PA 1425 CG18259-RA 582..1425 860..17 4020 99 Minus
CG6961-PA 1425 CG6961-RA 446..551 996..891 480 98.1 Minus
CG18259-PA 1425 CG18259-RA 446..551 996..891 480 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-RA 1894 CG6961-RA 596..1575 996..17 4750 99.2 Minus
CG18259-RA 2055 CG18259-RA 565..1544 996..17 4630 98.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18786599..18787341 99..841 3715 100 Plus
X 23542271 X 18781914..18782656 99..841 3610 99.1 Plus
X 23542271 X 18782713..18782868 841..996 585 91.7 Plus
X 23542271 X 18787398..18787553 841..996 585 91.7 Plus
X 23542271 X 18786461..18786544 17..100 420 100 Plus
X 23542271 X 18781776..18781859 17..100 405 98.8 Plus
Blast to na_te.dros performed on 2015-02-06 16:35:51 has no hits.

BS09815.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:36 Download gff for BS09815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-PA 446..1425 17..996 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:20 Download gff for BS09815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-PA 446..1425 17..996 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:35 Download gff for BS09815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 596..1579 14..996 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:17:49 Download gff for BS09815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 596..1579 14..996 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:17:49 Download gff for BS09815.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18786457..18786542 14..98 98 <- Plus
X 18786599..18787340 99..840 100 <- Plus
X 18787398..18787553 841..996 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:35 Download gff for BS09815.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18680490..18680575 14..98 98 <- Plus
arm_X 18680632..18681373 99..840 100 <- Plus
arm_X 18681431..18681586 841..996 94   Plus

BS09815.5prime Sequence

940 bp (880 high quality bases) assembled on 2006-04-19

> BS09815.5prime
GAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAG
AGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAAT
GCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCC
ATCGGGTGCACGAGGATCTCACTCTGATATGCCGGCAAAGCGCACCTTCG
ATGCCAGAAACACGATTGCCGCGAAGACACGGGCCAAGATAGCCGATGCT
CGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCA
ACTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTG
ATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGA
GTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGA
CGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGG
GTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCAT
AAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATAT
GCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAA
TGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGC
GGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAA
CAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTT
CGCTGACCAACCGACTCGTAGTTGGACGCTCAAATAGCACCAAGGAGCCT
CTCGAGCGCCGCCACCGCGACACAGTAAGCACAAGTAAACTCCCAGAATC
GCTGCGGTCTCGTCTGGTTGTCGGGTAGAGAGATCCTCAC

BS09815.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-PA 1425 CG6961-RA 1..924 17..940 4545 99.6 Plus
CG18259-PA 1425 CG18259-RA 1..924 17..940 4345 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-RA 1894 CG6961-RA 150..1074 16..940 4580 99.7 Plus
CG18259-RA 2055 CG18259-RA 119..1043 16..940 4460 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18787398..18787918 617..97 2605 100 Minus
X 23542271 X 18782713..18783233 617..97 2530 99 Minus
X 23542271 X 18787018..18787341 940..617 1575 99.1 Minus
X 23542271 X 18782333..18782656 940..617 1530 98.1 Minus
X 23542271 X 18787981..18788061 96..16 405 100 Minus
X 23542271 X 18783296..18783376 96..16 405 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:57:08 has no hits.

BS09815.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:37 Download gff for BS09815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-PA 1..924 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:21 Download gff for BS09815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-PA 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:42:02 Download gff for BS09815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 147..1074 10..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:20:34 Download gff for BS09815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 147..1074 10..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:20:34 Download gff for BS09815.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18787018..18787340 618..940 99 <- Minus
X 18787398..18787918 97..617 100 <- Minus
X 18787981..18788064 10..96 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:42:02 Download gff for BS09815.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18681051..18681373 618..940 99 <- Minus
arm_X 18681431..18681951 97..617 100 <- Minus
arm_X 18682014..18682097 10..96 96   Minus

BS09815.complete Sequence

1457 bp (1457 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636486

> BS09815.complete
GAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAG
AGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAAT
GCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCC
ATCGGGTGCACGAGGATCTCACTCTGATATGCCGGCAAAGCGCACCTTCG
ATGCCAGAAACACGATTGCCGCGAAGACACGGGCCAAGATAGCCGATGCT
CGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCA
ACTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTG
ATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGA
GTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGA
CGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGG
GTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCAT
AAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATAT
GCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAA
TGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGC
GGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAA
CAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTT
CGCTGACCAACCGACTCGTAGTTGGACGCTCAAATAGCACCAAGGAGCCT
CTCGAGCGCCGCCACCGCGACACAGTAAGCACAAGTAAACTCCCAGAATC
GCTGCGGTCTCGTCTGTTTGTCGGTAAGAGAGATCCTCACATTTCTCATG
GCATCTACGCCAACGAGAACCGGAGAAAGGCTGTTGGTGGCGGTGGTGGT
AGTGATAGCGATAGCGGTACTGATAGTGATGGTGATGCAGCTGCTCCATC
GAAGAACAAGCGCCGTTCGCCATCCCCATTGTCGCTGCGTACGTCGAACA
CAAAGGATGGATACCGCCTGCTGGTGAGCAATCTGCATACTAACGTGACT
ACTGCGGATATTCGCGAGCTTTTTAGCGACATCGGCCCAGTGTACGACGC
TCGTGTGGTGCGTCCCGGCACCGCCGAAGTTATTTACAAGTCACTGGAAC
ATGCCGAGAAGGCCGTAGATACCTATCACCATCGTCAGTTCGATGACCAG
CCCATGCACTGTGTGCTGGTCAATCCGCACTCCTCCCGTCGCTCGGTGCA
CAAGGCCAGCTCTCGCACCGTGACCACAAACTCGTCTGGCGTGGAGGTGG
ACATCGATGCACTTCACTCGGTACTCTTCAGGGCCCGCTAGAAGCTTTCT
AGACCAT

BS09815.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-RA 1425 CG6961-PA 1..1425 17..1441 7125 100 Plus
CG18259-RA 1425 CG18259-PA 1..1425 17..1441 6930 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-RA 1894 CG6961-RA 150..1575 16..1441 7130 100 Plus
CG18259-RA 2055 CG18259-RA 119..1544 16..1441 6935 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18786599..18787341 1359..617 3715 100 Minus
X 23542271 X 18781914..18782656 1359..617 3610 99.1 Minus
X 23542271 X 18787398..18787918 617..97 2605 100 Minus
X 23542271 X 18782713..18783233 617..97 2530 99 Minus
X 23542271 X 18786461..18786544 1441..1358 420 100 Minus
X 23542271 X 18781776..18781859 1441..1358 405 98.8 Minus
X 23542271 X 18783296..18783376 96..16 405 100 Minus
X 23542271 X 18787981..18788061 96..16 405 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:22:47 has no hits.

BS09815.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:12 Download gff for BS09815.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 1..1425 17..1441 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:25:06 Download gff for BS09815.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 142..1574 10..1444 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:17 Download gff for BS09815.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 151..1575 17..1441 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:12 Download gff for BS09815.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 142..1574 10..1444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:18 Download gff for BS09815.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 151..1575 17..1441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:18 Download gff for BS09815.complete
Subject Subject Range Query Range Percent Splice Strand
X 18786461..18786542 1360..1441 100 <- Minus
X 18786599..18787340 618..1359 100 <- Minus
X 18787398..18787918 97..617 100 <- Minus
X 18787981..18788060 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:17 Download gff for BS09815.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18680494..18680575 1360..1441 100 <- Minus
arm_X 18680632..18681373 618..1359 100 <- Minus
arm_X 18681431..18681951 97..617 100 <- Minus
arm_X 18682014..18682093 17..96 100   Minus

BS09815.pep Sequence

Translation from 16 to 1440

> BS09815.pep
MDIDLSLDEIIERKRGQRGYRPLDRKFNANFSKPRQLLNKPFFKPSGARG
SHSDMPAKRTFDARNTIAAKTRAKIADARDLINKSVRDSGIDARQLLLER
KKARSAGPILIDDEEESFEPSHRARGKGVHIGQFGHRLSMSNHADGTIQA
KWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLED
EEISRTLHLGQMKQASPRYSIGGLDLNRGDDVEMSMAPLNNKIDNNAFSI
YEAARNRIERPSLTNRLVVGRSNSTKEPLERRHRDTVSTSKLPESLRSRL
FVGKRDPHISHGIYANENRRKAVGGGGGSDSDSGTDSDGDAAAPSKNKRR
SPSPLSLRTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPVYDARVVRP
GTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSR
TVTTNSSGVEVDIDALHSVLFRAR*

BS09815.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-PA 474 CG6961-PA 1..474 1..474 2449 100 Plus
CG18259-PA 474 CG18259-PA 1..474 1..474 2421 98.7 Plus