Clone Sequence Records
BS09817.complete Sequence
2159 bp assembled on 2009-12-07
GenBank Submission: KX805559
> BS09817.complete
GAAGTTATCAGTCGACATGATTCATGTGGGCGAAAATACGTGGAACCTGC
GGATCCTCATCACGGATCTGCAGGTGGAGAAGACGCTGCGCGTGAAGGGT
GACCAGCACATTGGCGGCGTAATGCTGAACCTGGTGGATCCGGAGTTGCC
CAAGGATTGGTCCGATCACGCCCTGTGGTGGCCCGCCAAGAATATCTGGC
TGACCAGGACGCGGTCCACTTTGGACCAGGCCGGAGTTCAATCGGATTCC
TTTCTGCACTTCACGCCCATGCACAAGACACTGAGGGTGCAGATGCCCGA
TCTTCGTTATCTGGACTACCGCGTCAACTTTTCGGCCAAAACTTTCGGAG
CCGTTGTGAGCTTGTGCAAGGACCTGGACATTCGCTATCCGGAGGAACTG
TCTTTCTGCAAGCCCCTGGAACCGGAGCATCTGAAGAAGAACTTCTCCAA
GCTGCCGCAGCGAAAGATTCCGGTGGCGGAGGCAAATGGAATCGCATACG
TGCAGCCAGCGCTGGACACCAACTCCTTTGTCCCGATCACAGGAGCCTAT
AACGGTAGCAATGGCAGCCTGGATCGCTCGCACAATGGCAATCTGCTGTG
CGCTCCGGCTTCACCGTATACCCGACGGGCAGCCACTGCTCCGGGAACAC
CCATCAGCTCGCCCACGGGCACCTGGAAGCACAACTCCACTGGCTATGCT
AGCTACGATTCCAACTCTAGTTTCGGAGACCTCCAGGAGAATCTGGCCAT
GTCGCCAAGGTCGCCCAGTCCGGATGTACGAGCACGCTTGGTTCGACCCA
AGTCCCGGGTGGAGAAAGCCCGTCTCAACGTGGGATGGTTGGACTCGTCC
CTTTCCATCATGGAGCAGGGAGTTAGGGAGTATGACACTCTGTGCCTGCG
CTTCAAATACTTCACGTTCTTCGATCTGAACCCCAAGTACGACCAAGTGA
GGATCAATCAACTGTACGAGCAAGCCAAATGGAGCATTTTGAACGAGGAA
TTGGAACCCACCGAGGAGGAGACCCTCATGTTTGCCGCCCTGCAGTTCCA
GGTGAATCATCAGACGGATCTGCATCCCCCAGGCATCGATTCCGGAATAG
ATACCTCCAGTCAGGAGACTGGCGGCGAGGACGACATTGACTCCGCTCTC
AACGAGCTGCAGATCACACTCGAAGGACCAGGAGGTGGCAAGGATCAGGG
CAACATCACCAGGATACCAGAGCTGTCGGACTATTTGAAATTCCTCAAGC
CTCAAAGGTTCACCCTTAAAGGATACAAGCGCTACTTCTTCACCTACAGG
GATCTGCATCTGCACCTTTACAAATCGCAGGATGAGTCCAGGCGGGGAGC
TCCCACCATCAGCATCAATTTGAAGGGCTGCGAGGTGACGCCCGATGTTA
ACCTGGCCCAAGGAAAGTTCGCCATCCGTCTGGAAGTTCCGTCAGAGATC
AGAAATGGTCCGAACAGTGAGGTCTGGGTGAGATGCGACAACGAAGAGCA
GTACGCCAAGTGGATGGCAGCCTGTCGTCTGGCCGCCAAGGGTCGCTCTC
TAGCCGATAGCTCTTACGACAGCGAAGTTAGCAGTATTCGCTCGCTGCTG
CAGATGCAGAAACCCGCCCAGGGAGCTCCGCTCACCGTCAACCCGCGAAG
TGTTGAGCCCATGGATTACCTATCGCCCAAAATGATGCGCAAACTATCCA
GCAAGGCGGTGCAGAGGATCCTAGAGGCCCATGCCAACGTTCGCCAGCTG
AGCTTAATGGACGCCAAGATGAAGTACATCCAGGCTTGGCAATCTCTACC
AGACTTCGGTGTTACTCTCTTCATCATCAAGTTCGATGGACACAAGAAGG
AGGAGCTGTTGGGCGTGGCCAACAATCGTATCATGCGCATGGACCTCAAC
ACCGGCGATCACATAAAGACCTGGCGCTACAACACAATGAAGGCCTGGAA
TGTTAACTGGGGCATCAAGTGCATGATGATTCAGCTGCAGGACGAGAACA
TCGTCTTCTCCGTGCAGTCGGCCGACTGTAAGGTGGTGCACGAGTTCATC
GGCGGCTACATATTCATGTCCATGCGATCCAAGGAGAACAACCAGACGCT
GAACGAGGAGATGTTCCACAAGCTGACGGGCGGCTGGTCGTAAAAGCTTT
CTAGACCAT
BS09817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit1-RB | 2127 | CG14991-PB | 1..2127 | 17..2143 | 10635 | 100 | Plus |
| Fit1-RA | 2127 | CG14991-PA | 1..2127 | 17..2143 | 10635 | 100 | Plus |
| Fit2-RA | 2148 | CG7729-PA | 796..2144 | 797..2139 | 1850 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit1-RB | 3469 | CG14991-RB | 613..2740 | 17..2144 | 10640 | 100 | Plus |
| Fit1-RA | 3119 | CG14991-RA | 697..2824 | 17..2144 | 10640 | 100 | Plus |
| Fit2-RA | 2790 | CG7729-RA | 1126..2474 | 797..2139 | 1850 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4104260..4106387 | 17..2144 | 10640 | 100 | Plus |
| 3L | 28110227 | 3L | 17025453..17026801 | 797..2139 | 1850 | 76 | Plus |
| 3L | 28110227 | 3L | 17024657..17025100 | 16..459 | 615 | 75.9 | Plus |
Blast to na_te.dros performed 2014-11-28 02:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 3174..3225 | 904..955 | 134 | 73.1 | Plus |
BS09817.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 10:00:58 Download gff for
BS09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-RB | 610..2734 | 17..2141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:15 Download gff for
BS09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-RA | 697..2821 | 17..2141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:23 Download gff for
BS09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-RA | 694..2818 | 17..2141 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:34 Download gff for
BS09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-RA | 697..2821 | 17..2141 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:34 Download gff for
BS09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4104260..4106384 | 17..2141 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:15 Download gff for
BS09817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4104260..4106384 | 17..2141 | 100 | | Plus |
BS09817.3prime Sequence
895 bp (890 high quality bases) assembled on 2006-04-19
> BS09817.3prime
ATGGTCTAGAAAGCTTTTACGACCAGCCGCCCGTCAGCTTGTGGAACATC
TCCTCGTTCAGCGTCTGGTTGTTCTCCTTGGATCGCATGGACATGAATAT
GTAGCCGCCGATGAACTCGTGCACCACCTTACAGTCGGCCGACTGCACGG
AGAAGACGATGTTCTCGTCCTGCAGCTGAATCATCATGCACTTGATGCCC
CAGTTAACATTCCAGGCCTTCATTGTGTTGTAGCGCCAGGTCTTTATGTG
ATCGCCGGTGTTGAGGTCCATGCGCATGATACGATTGTTGGCCACGCCCA
ACAGCTCCTCCTTCTTGTGTCCATCGAACTTGATGATGAAGAGAGTAACA
CCGAAGTCTGGTAGAGATTGCCAAGCCTGGATGTACTTCATCTTGGCGTC
CATTAAGCTCAGCTGGCGAACGTTGGCATGGGCCTCTAGGATCCTCTGCA
CCGCCTTGCTGGATAGTTTGCGCATCATTTTGGGCGATAGGTAATCCATG
GGCTCAACACTTCGCGGGTTGACGGTGAGCGGAGCTCCCTGGGCGGGTTT
CTGCATCTGCAGCAGCGAGCGAATACTGCTAACTTCGCTGTCGTAAGAGC
TATCGGCTAGAGAGCGACCCTTGGCGGCCAGACGACAGGCTGCCATCCAC
TTGGCGTACTGCTCTTCGTTGTCGCATCTCACCCAGACCTCACTGTTCGG
ACCATTTCTGATCTCTGACGGAACTTCCAGACGGATGGCGAACTTTCCTT
GGGCCAGGTTAACATCGGGCGTCACCTCGCAGCCCTTCAAATTGATGCTG
ATGGTGGGAGCTCCCCGCCTGGACTCATCCTGCGATTTGTAAAGGTGCAG
ATGCAGATCCCTGTAGGTGAAGAAGTAGCGCTTGTATCCTTTAAG
BS09817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14991-PA | 2127 | Fit1-RA | 1249..2127 | 895..17 | 4395 | 100 | Minus |
| CG14991-PB | 2127 | Fit1-RB | 1249..2127 | 895..17 | 4395 | 100 | Minus |
| CG7729-PA | 2148 | Fit2-RA | 2026..2144 | 139..21 | 295 | 89.9 | Minus |
| CG7729-PA | 2148 | Fit2-RA | 1468..1547 | 697..618 | 150 | 87.5 | Minus |
| CG7729-PA | 2148 | Fit2-RA | 1912..1989 | 253..176 | 140 | 87.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit1-RB | 3469 | CG14991-RB | 1861..2740 | 895..16 | 4400 | 100 | Minus |
| Fit1-RA | 3119 | CG14991-RA | 1945..2824 | 895..16 | 4400 | 100 | Minus |
| Fit2-RA | 2790 | CG7729-RA | 1612..2474 | 883..21 | 1350 | 77.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4105508..4106387 | 895..16 | 4400 | 100 | Minus |
| 3L | 28110227 | 3L | 17025939..17026801 | 883..21 | 1300 | 76.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:39:01 has no hits.
BS09817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:41 Download gff for
BS09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-PB | 1249..2127 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:26 Download gff for
BS09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14991-PB | 1249..2127 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:48:56 Download gff for
BS09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-RA | 1945..2830 | 10..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:53 Download gff for
BS09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-RA | 1945..2830 | 10..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:53 Download gff for
BS09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4105508..4106393 | 10..895 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:48:56 Download gff for
BS09817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4105508..4106393 | 10..895 | 99 | | Minus |
BS09817.5prime Sequence
939 bp (753 high quality bases) assembled on 2006-04-19
> BS09817.5prime
GAAGTTATCAGTCGACATGATTCATGTGGGCGAAAATACGTGGAACCTGC
GGATCCTCATCACGGATCTGCAGGTGGAGAAGACGCTGCGCGTGAAGGGT
GACCAGCACATTGGCGGCGTAATGCTGAACCTGGTGGATCCGGAGTTGCC
CAAGGATTGGTCCGATCACGCCCTGTGGTGGCCCGCCAAGAATATCTGGC
TGACCAGGACGCGGTCCACTTTGGACCAGGCCGGAGTTCAATCGGATTCC
TTTCTGCACTTCACGCCCATGCACAAGACACTGAGGGTGCAGATGCCCGA
TCTTCGTTATCTGGACTACCGCGTCAACTTTTCGGCCAAAACTTTCGGAG
CCGTTGTGAGCTTGTGCAAGGACCTGGACATTCGCTATCCGGAGGAACTG
TCTTTCTGCAAGCCCCTGGAACCGGAGCATCTGAAGAAGAACTTCTCCAA
GCTGCCGCAGCGAAAGATTCCGGTGGCGGAGGCAAATGGAATCGCATACG
TGCAGCCAGCGCTGGACACCAACTCCTTTGTCCCGATCACAGGAGCCTAT
AACGGTAGCAATGGCAGCCTGGATCGCTCGCACAATGGCAATCTGCTGTG
CGCTCCGGCTTCACCGTATACCCGACGGGCAGCCACTGCTCCGGGAACAC
CCATCAGCTCGCCCACGGGCACCTGGAAGCACAACTCCACTGGCTATGCT
AGCTACGATTCCAACTCTAGTTTCGGAGACCTCCAGGAGAATCTGGCCAT
GTCGCCAAGGTCGCCCAGTCCGGATGTACGAGCACGCTTGGTTCGACCCA
AGTCCCGGGTGGAGAAAGCCCGTCTCAACGTGGGATGGNTGGACTCGTCC
CTTTCCATCATGGAGCAGGNAGTTAGGGAGTATGACACTCTGTGCCTGCG
CTTCAAATACTCACGTTTCTCGATCTGACCCCCAGTACG
BS09817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14991-PA | 2127 | Fit1-RA | 1..895 | 17..911 | 4437 | 99.7 | Plus |
| CG14991-PB | 2127 | Fit1-RB | 1..895 | 17..911 | 4437 | 99.7 | Plus |
| CG7729-PA | 2148 | Fit2-RA | 236..276 | 252..292 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit1-RB | 3469 | CG14991-RB | 613..1537 | 17..939 | 4508 | 99.2 | Plus |
| Fit1-RA | 3119 | CG14991-RA | 697..1621 | 17..939 | 4508 | 99.2 | Plus |
| Fit2-RA | 2790 | CG7729-RA | 330..856 | 16..539 | 625 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4104260..4105178 | 17..934 | 4478 | 99.3 | Plus |
| 3L | 28110227 | 3L | 17024657..17025100 | 16..459 | 615 | 75.9 | Plus |
| 3L | 28110227 | 3L | 17025453..17025562 | 797..906 | 228 | 80 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:05:40 has no hits.
BS09817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:20:42 Download gff for
BS09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-PB | 1..925 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:34:27 Download gff for
BS09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14991-PB | 1..925 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:34 Download gff for
BS09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-RA | 689..1621 | 10..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:19 Download gff for
BS09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fit1-RA | 689..1621 | 10..939 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:19 Download gff for
BS09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4104252..4105184 | 10..939 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:34 Download gff for
BS09817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4104252..4105184 | 10..939 | 98 | | Plus |
BS09817.pep Sequence
Translation from 16 to 2142
> BS09817.pep
MIHVGENTWNLRILITDLQVEKTLRVKGDQHIGGVMLNLVDPELPKDWSD
HALWWPAKNIWLTRTRSTLDQAGVQSDSFLHFTPMHKTLRVQMPDLRYLD
YRVNFSAKTFGAVVSLCKDLDIRYPEELSFCKPLEPEHLKKNFSKLPQRK
IPVAEANGIAYVQPALDTNSFVPITGAYNGSNGSLDRSHNGNLLCAPASP
YTRRAATAPGTPISSPTGTWKHNSTGYASYDSNSSFGDLQENLAMSPRSP
SPDVRARLVRPKSRVEKARLNVGWLDSSLSIMEQGVREYDTLCLRFKYFT
FFDLNPKYDQVRINQLYEQAKWSILNEELEPTEEETLMFAALQFQVNHQT
DLHPPGIDSGIDTSSQETGGEDDIDSALNELQITLEGPGGGKDQGNITRI
PELSDYLKFLKPQRFTLKGYKRYFFTYRDLHLHLYKSQDESRRGAPTISI
NLKGCEVTPDVNLAQGKFAIRLEVPSEIRNGPNSEVWVRCDNEEQYAKWM
AACRLAAKGRSLADSSYDSEVSSIRSLLQMQKPAQGAPLTVNPRSVEPMD
YLSPKMMRKLSSKAVQRILEAHANVRQLSLMDAKMKYIQAWQSLPDFGVT
LFIIKFDGHKKEELLGVANNRIMRMDLNTGDHIKTWRYNTMKAWNVNWGI
KCMMIQLQDENIVFSVQSADCKVVHEFIGGYIFMSMRSKENNQTLNEEMF
HKLTGGWS*
BS09817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fit1-PB | 708 | CG14991-PB | 1..708 | 1..708 | 3748 | 100 | Plus |
| Fit1-PA | 708 | CG14991-PA | 1..708 | 1..708 | 3748 | 100 | Plus |
| Fit2-PA | 715 | CG7729-PA | 1..715 | 1..708 | 2873 | 75.6 | Plus |
